Wall clock time and date at job start Wed Apr 1 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.53001 * 109.46982 * 119.99959 * 2 1 3 5 5 C 1.52997 * 109.46921 * 173.67158 * 4 2 1 6 6 H 1.08996 * 109.78498 * 54.78803 * 5 4 2 7 7 C 1.52785 * 109.55843 * 294.55381 * 5 4 2 8 8 N 1.46896 * 109.42026 * 186.61011 * 7 5 4 9 9 C 1.46900 * 110.99999 * 187.11260 * 8 7 5 10 10 C 1.46897 * 111.27168 * 62.96675 * 8 7 5 11 11 C 1.53247 * 109.33942 * 296.89525 * 10 8 7 12 12 N 1.47074 * 108.52006 * 53.82628 * 11 10 8 13 13 S 1.65605 * 120.88129 * 128.81932 * 12 11 10 14 14 O 1.42103 * 106.39775 * 344.89715 * 13 12 11 15 15 O 1.42098 * 106.40407 * 211.97336 * 13 12 11 16 16 N 1.65600 * 107.21553 * 98.43298 * 13 12 11 17 17 C 1.46504 * 120.00032 * 280.59804 * 16 13 12 18 18 C 1.46498 * 119.99782 * 100.60311 * 16 13 12 19 19 H 1.08991 * 109.47258 * 0.60702 * 18 16 13 20 20 C 1.52999 * 109.47147 * 120.61171 * 18 16 13 21 21 C 1.50710 * 109.46669 * 240.60516 * 18 16 13 22 22 H 1.07999 * 120.00137 * 0.02562 * 21 18 16 23 23 C 1.37874 * 119.99749 * 179.97438 * 21 18 16 24 24 N 1.31511 * 120.00127 * 0.02562 * 23 21 18 25 25 Si 1.86796 * 119.99983 * 180.02562 * 23 21 18 26 26 H 1.48508 * 109.46972 * 60.00380 * 25 23 21 27 27 H 1.48500 * 109.47225 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47518 * 300.00402 * 25 23 21 29 29 H 1.08997 * 109.47111 * 299.99657 * 1 2 3 30 30 H 1.09000 * 109.46922 * 60.00299 * 1 2 3 31 31 H 1.09005 * 109.46900 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46583 * 239.99812 * 2 1 3 33 33 H 1.09003 * 109.46863 * 65.56762 * 3 2 1 34 34 H 1.08998 * 109.46859 * 185.57117 * 3 2 1 35 35 H 1.08999 * 109.46781 * 305.57021 * 3 2 1 36 36 H 1.09002 * 109.46694 * 53.67170 * 4 2 1 37 37 H 1.08996 * 109.47117 * 293.67387 * 4 2 1 38 38 H 1.08998 * 109.56179 * 66.55347 * 7 5 4 39 39 H 1.09000 * 109.35850 * 306.53732 * 7 5 4 40 40 H 1.08997 * 109.47480 * 299.65513 * 9 8 7 41 41 H 1.09006 * 109.46720 * 59.65090 * 9 8 7 42 42 H 1.08996 * 109.47642 * 179.65074 * 9 8 7 43 43 H 1.08998 * 109.49480 * 176.93395 * 10 8 7 44 44 H 1.09002 * 109.49177 * 56.85204 * 10 8 7 45 45 H 1.09001 * 109.62170 * 294.11492 * 11 10 8 46 46 H 1.09002 * 109.62522 * 173.53761 * 11 10 8 47 47 H 1.09001 * 109.46868 * 270.00437 * 17 16 13 48 48 H 1.09003 * 109.47005 * 30.00262 * 17 16 13 49 49 H 1.08994 * 109.47177 * 150.00286 * 17 16 13 50 50 H 1.09005 * 109.46925 * 180.02562 * 20 18 16 51 51 H 1.09000 * 109.47598 * 59.99786 * 20 18 16 52 52 H 1.09003 * 109.46766 * 299.99376 * 20 18 16 53 53 H 0.97005 * 120.00539 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5617 -0.8604 1.1723 6 1 4.0146 0.1194 1.0208 7 6 3.9332 -1.7782 0.0087 8 7 5.3790 -2.0369 0.0330 9 6 5.8017 -2.7763 -1.1639 10 6 5.7728 -2.7474 1.2569 11 6 5.4782 -1.8636 2.4738 12 7 4.0676 -1.4508 2.4208 13 16 3.0735 -1.6516 3.7299 14 8 3.7410 -2.5489 4.6067 15 8 1.7725 -1.8941 3.2124 16 7 2.9999 -0.1966 4.5173 17 6 4.0929 0.2134 5.4025 18 6 1.8418 0.6805 4.3287 19 1 1.1333 0.2059 3.6498 20 6 1.1659 0.9302 5.6784 21 6 2.2958 1.9932 3.7438 22 1 3.3423 2.1574 3.5333 23 6 1.3751 2.9840 3.4766 24 7 0.1007 2.7839 3.7324 25 14 1.9377 4.6108 2.7510 26 1 2.5939 4.3679 1.4410 27 1 0.7637 5.4995 2.5587 28 1 2.9029 5.2578 3.6756 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.7604 1.9267 0.9357 34 1 3.1255 1.4441 -0.0998 35 1 1.5975 1.9843 -0.8359 36 1 1.5871 -1.7110 1.3076 37 1 1.7721 -0.1462 2.1356 38 1 3.6649 -1.3001 -0.9333 39 1 3.3935 -2.7203 0.1051 40 1 5.2812 -3.7332 -1.2026 41 1 5.5603 -2.1952 -2.0540 42 1 6.8771 -2.9491 -1.1234 43 1 6.8387 -2.9721 1.2201 44 1 5.2074 -3.6759 1.3364 45 1 6.1190 -0.9822 2.4497 46 1 5.6607 -2.4276 3.3886 47 1 3.8919 -0.1378 6.4146 48 1 5.0290 -0.2177 5.0475 49 1 4.1709 1.3005 5.4039 50 1 0.3039 1.5825 5.5379 51 1 1.8744 1.4048 6.3573 52 1 0.8375 -0.0192 6.1014 53 1 -0.5471 3.4811 3.5448 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922024895.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:43 Heat of formation + Delta-G solvation = -76.524893 kcal Electronic energy + Delta-G solvation = -33332.985944 eV Core-core repulsion = 29366.264747 eV Total energy + Delta-G solvation = -3966.721197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.41970 -38.70296 -37.85324 -37.11097 -36.80142 -35.41138 -34.43526 -32.34703 -30.88823 -29.03075 -27.91520 -27.58642 -27.15632 -26.94534 -24.87704 -23.59219 -22.57060 -21.68192 -20.84006 -19.69549 -18.68501 -18.29202 -17.99553 -17.30485 -16.68683 -16.50597 -16.03421 -15.88490 -15.70702 -15.52140 -15.17497 -15.09142 -14.76251 -14.50183 -14.47182 -14.22731 -13.67709 -13.60457 -13.47573 -13.25859 -13.20585 -13.15006 -13.06861 -12.93972 -12.89096 -12.79824 -12.69782 -12.64073 -12.42386 -12.26283 -12.16224 -12.06884 -12.06373 -11.82293 -11.75064 -11.37933 -11.26385 -11.04222 -10.79809 -10.38156 -10.06495 -9.60717 -9.25864 -8.00523 -6.12149 -0.30854 1.47457 1.49840 1.54401 1.97512 2.49270 2.58147 2.95199 3.29195 3.40010 3.54619 3.91827 4.08271 4.11783 4.14129 4.18193 4.23619 4.30316 4.38635 4.48877 4.63809 4.66830 4.68741 4.72790 4.74835 4.78771 4.84305 4.89899 4.91424 4.97759 4.99233 5.01896 5.06887 5.08955 5.11515 5.16107 5.18623 5.25859 5.30315 5.38822 5.47580 5.59399 5.66962 5.70293 5.77383 5.81945 5.97303 6.05440 6.13459 6.17139 6.36591 6.93786 7.55769 9.03568 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.005956 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.873771 B = 4700.371506 C = 5840.783107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 C -0.151 4.151 4 C -0.150 4.150 5 C 0.170 3.830 6 H 0.079 0.921 7 C 0.055 3.945 8 N -0.549 5.549 9 C 0.026 3.974 10 C 0.047 3.953 11 C 0.114 3.886 12 N -1.003 6.003 13 S 2.784 3.216 14 O -1.015 7.015 15 O -1.000 7.000 16 N -0.998 5.998 17 C 0.103 3.897 18 C 0.271 3.729 19 H 0.042 0.958 20 C -0.141 4.141 21 C -0.513 4.513 22 H 0.062 0.938 23 C 0.035 3.965 24 N -0.911 5.911 25 Si 0.933 3.067 26 H -0.263 1.263 27 H -0.293 1.293 28 H -0.277 1.277 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.029 0.971 40 H 0.024 0.976 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.113 0.887 44 H 0.029 0.971 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.048 0.952 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.040 0.960 52 H 0.013 0.987 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 -7.612 -8.892 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.208 4.208 4 C -0.189 4.189 5 C 0.064 3.936 6 H 0.097 0.903 7 C -0.075 4.075 8 N -0.273 5.273 9 C -0.121 4.121 10 C -0.083 4.083 11 C -0.011 4.011 12 N -0.844 5.844 13 S 2.797 3.203 14 O -0.999 6.999 15 O -0.985 6.985 16 N -0.839 5.839 17 C -0.043 4.043 18 C 0.167 3.833 19 H 0.059 0.941 20 C -0.201 4.201 21 C -0.553 4.553 22 H 0.080 0.920 23 C -0.165 4.165 24 N -0.550 5.550 25 Si 0.759 3.241 26 H -0.188 1.188 27 H -0.219 1.219 28 H -0.203 1.203 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.131 0.869 44 H 0.047 0.953 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.090 0.910 51 H 0.059 0.941 52 H 0.032 0.968 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.638 -7.895 -8.611 15.801 hybrid contribution -0.545 0.636 0.057 0.840 sum 10.093 -7.260 -8.553 15.091 Atomic orbital electron populations 1.21758 0.95679 1.01283 1.01144 1.21008 0.95572 0.95980 0.97240 1.21937 1.00914 0.96265 1.01671 1.22684 0.93254 1.02493 1.00477 1.20990 0.93513 0.96742 0.82377 0.90271 1.22409 0.87992 0.98124 0.98933 1.61891 1.14357 1.47993 1.03069 1.22429 1.01634 0.96079 0.92004 1.22477 1.02341 0.94186 0.89282 1.21753 0.80295 0.99732 0.99320 1.58154 1.22390 1.76962 1.26867 1.01667 0.72807 0.73243 0.72622 1.93475 1.77036 1.63757 1.65604 1.93634 1.40401 1.85366 1.79060 1.57684 1.29312 1.38190 1.58754 1.21321 0.87565 1.02414 0.93008 1.18538 0.82156 0.88886 0.93736 0.94086 1.21989 1.01631 0.98585 0.97856 1.21365 0.94003 0.98698 1.41209 0.91984 1.25363 0.94761 1.00571 0.95833 1.69978 1.01774 1.34556 1.48695 0.86023 0.77538 0.80734 0.79765 1.18761 1.21922 1.20284 0.95075 0.91491 0.92738 0.89391 0.93794 0.92215 0.92457 0.90419 0.90660 0.88028 0.95248 0.95730 0.90465 0.89788 0.86894 0.95303 0.89625 0.88740 0.93324 0.91142 0.90513 0.90971 0.94072 0.96761 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.19 71.98 0.66 -3.97 16 2 C -0.08 -2.49 2.80 -10.79 -0.03 -2.52 16 3 C -0.15 -5.01 8.85 71.98 0.64 -4.38 16 4 C -0.15 -5.48 2.48 30.59 0.08 -5.41 16 5 C 0.17 5.33 2.99 44.81 0.13 5.46 16 6 H 0.08 2.57 6.53 -2.39 -0.02 2.56 16 7 C 0.06 1.39 4.49 86.23 0.39 1.77 16 8 N -0.55 -11.99 4.88 -922.41 -4.51 -16.50 16 9 C 0.03 0.42 9.58 127.69 1.22 1.64 16 10 C 0.05 0.99 5.62 86.39 0.49 1.48 16 11 C 0.11 2.90 6.69 86.35 0.58 3.48 16 12 N -1.00 -32.49 3.39 -490.69 -1.67 -34.15 16 13 S 2.78 110.62 5.59 -56.49 -0.32 110.31 16 14 O -1.01 -41.85 16.03 -128.00 -2.05 -43.90 16 15 O -1.00 -45.22 11.93 -128.00 -1.53 -46.75 16 16 N -1.00 -41.02 3.12 -520.44 -1.62 -42.64 16 17 C 0.10 3.55 9.30 127.77 1.19 4.74 16 18 C 0.27 12.94 1.85 44.25 0.08 13.02 16 19 H 0.04 2.22 5.09 -2.39 -0.01 2.21 16 20 C -0.14 -6.72 8.96 71.98 0.65 -6.08 16 21 C -0.51 -25.06 7.56 25.60 0.19 -24.86 16 22 H 0.06 2.97 7.38 -2.91 -0.02 2.95 16 23 C 0.04 1.76 4.78 84.65 0.40 2.17 16 24 N -0.91 -48.83 11.32 21.45 0.24 -48.59 16 25 Si 0.93 40.51 29.28 68.60 2.01 42.51 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.09 2.22 6.46 -2.39 -0.02 2.21 16 33 H 0.04 1.81 7.17 -2.39 -0.02 1.79 16 34 H 0.06 1.82 6.77 -2.39 -0.02 1.80 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 3.03 6.42 -2.39 -0.02 3.01 16 37 H 0.08 3.32 3.42 -2.39 -0.01 3.32 16 38 H 0.10 2.22 6.74 -2.39 -0.02 2.20 16 39 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 43 H 0.11 1.74 8.07 -2.39 -0.02 1.72 16 44 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.09 2.39 6.78 -2.39 -0.02 2.37 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.07 2.04 8.03 -2.39 -0.02 2.02 16 49 H 0.08 2.69 7.06 -2.39 -0.02 2.68 16 50 H 0.07 3.76 6.07 -2.38 -0.01 3.75 16 51 H 0.04 1.83 7.66 -2.39 -0.02 1.81 16 52 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 53 H 0.26 13.57 8.31 -92.70 -0.77 12.80 16 Total: -1.00 -61.30 397.61 -1.90 -63.19 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.88 Total: 29.98 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 6.67 Total: -13.47 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -7.55 Total: -141.88 kcal Atomic # 8 Polarization: -87.07 SS G_CDS: -3.58 Total: -90.65 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.01 Total: 42.51 kcal Atomic # 16 Polarization: 110.62 SS G_CDS: -0.32 Total: 110.31 kcal Total: -61.30 -1.90 -63.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922024895.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.330 kcal (2) G-P(sol) polarization free energy of solvation -61.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds