Wall clock time and date at job start Wed Apr 1 2020 04:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46696 * 2 1 4 4 C 1.52998 * 109.47233 * 240.00088 * 2 1 3 5 5 N 1.46904 * 109.46822 * 184.99397 * 4 2 1 6 6 C 1.47009 * 111.00142 * 293.63699 * 5 4 2 7 7 C 1.53100 * 109.25504 * 177.60676 * 6 5 4 8 8 O 1.43015 * 109.25786 * 56.84761 * 7 6 5 9 9 C 1.43010 * 113.73924 * 301.32982 * 8 7 6 10 10 C 1.47016 * 110.99845 * 169.99585 * 5 4 2 11 11 N 1.46497 * 109.47065 * 119.99481 * 2 1 3 12 12 C 1.46503 * 119.99625 * 60.00696 * 11 2 1 13 13 C 1.34775 * 120.00287 * 240.00394 * 11 2 1 14 14 O 1.21589 * 119.99884 * 359.97438 * 13 11 2 15 15 N 1.34776 * 119.99708 * 180.02562 * 13 11 2 16 16 C 1.39959 * 119.99454 * 174.83259 * 15 13 11 17 17 C 1.39287 * 119.94862 * 146.38066 * 16 15 13 18 18 C 1.38483 * 120.43536 * 179.97438 * 17 16 15 19 19 C 1.37691 * 120.31979 * 359.97438 * 18 17 16 20 20 C 1.40748 * 119.87904 * 0.02562 * 19 18 17 21 21 C 1.41405 * 120.20493 * 180.02562 * 20 19 18 22 22 H 1.07996 * 119.99848 * 151.77406 * 21 20 19 23 23 C 1.39937 * 119.99802 * 331.76626 * 21 20 19 24 24 N 1.30819 * 120.00087 * 348.99157 * 23 21 20 25 25 Si 1.86801 * 119.99695 * 168.99315 * 23 21 20 26 26 H 1.48499 * 109.47043 * 94.98814 * 25 23 21 27 27 H 1.48496 * 109.47411 * 214.98988 * 25 23 21 28 28 H 1.48503 * 109.47426 * 334.99356 * 25 23 21 29 29 C 1.38236 * 119.95046 * 326.09894 * 16 15 13 30 30 H 1.08999 * 109.47068 * 60.00295 * 1 2 3 31 31 H 1.09003 * 109.46696 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47426 * 300.00051 * 1 2 3 33 33 H 1.08993 * 109.47070 * 304.99632 * 4 2 1 34 34 H 1.09001 * 109.47148 * 64.99831 * 4 2 1 35 35 H 1.08997 * 109.50534 * 297.53870 * 6 5 4 36 36 H 1.09002 * 109.50968 * 57.67372 * 6 5 4 37 37 H 1.08996 * 109.50919 * 296.91054 * 7 6 5 38 38 H 1.08997 * 109.54260 * 176.80486 * 7 6 5 39 39 H 1.09001 * 109.50413 * 298.72923 * 9 8 7 40 40 H 1.09006 * 109.54276 * 178.63067 * 9 8 7 41 41 H 1.08993 * 109.50967 * 302.33739 * 10 5 4 42 42 H 1.09003 * 109.50417 * 62.46369 * 10 5 4 43 43 H 1.09007 * 109.47204 * 89.99925 * 12 11 2 44 44 H 1.09003 * 109.47110 * 209.99620 * 12 11 2 45 45 H 1.08993 * 109.47071 * 329.99566 * 12 11 2 46 46 H 0.96997 * 120.00696 * 354.82859 * 15 13 11 47 47 H 1.08006 * 119.77969 * 359.97438 * 17 16 15 48 48 H 1.07999 * 119.84265 * 180.02562 * 18 17 16 49 49 H 1.07990 * 120.05873 * 180.02562 * 19 18 17 50 50 H 0.97008 * 119.99806 * 179.97438 * 24 23 21 51 51 H 1.08000 * 120.15847 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8265 -1.1904 6 6 4.1317 0.4999 -1.2796 7 6 5.6502 0.3495 -1.1545 8 8 6.1210 -0.5417 -2.1691 9 6 5.5309 -1.8431 -2.1114 10 6 4.0113 -1.7149 -2.2462 11 7 2.0183 -0.6905 1.1962 12 6 1.6645 -2.0931 1.4280 13 6 2.7931 -0.0355 2.0834 14 8 3.0872 1.1285 1.8907 15 7 3.2427 -0.6710 3.1836 16 6 4.1341 -0.0263 4.0488 17 6 4.0796 -0.2783 5.4176 18 6 4.9570 0.3536 6.2828 19 6 5.8942 1.2384 5.7986 20 6 5.9611 1.5030 4.4178 21 6 6.9213 2.4102 3.9130 22 1 7.2953 2.2958 2.9063 23 6 7.3867 3.4561 4.7178 24 7 6.7870 3.7283 5.8482 25 14 8.8642 4.4636 4.1780 26 1 8.3994 5.6851 3.4729 27 1 9.6602 4.8525 5.3696 28 1 9.7074 3.6541 3.2620 29 6 5.0711 0.8553 3.5430 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6055 -1.7197 -1.2951 34 1 1.7517 -0.1583 -2.1370 35 1 3.8888 0.9536 -2.2404 36 1 3.7611 1.1330 -0.4734 37 1 5.8962 -0.0544 -0.1725 38 1 6.1243 1.3233 -1.2767 39 1 5.7736 -2.3108 -1.1573 40 1 5.9182 -2.4555 -2.9258 41 1 3.5527 -2.6985 -2.1456 42 1 3.7665 -1.2966 -3.2225 43 1 2.4159 -2.7376 0.9717 44 1 1.6238 -2.2852 2.5002 45 1 0.6906 -2.3001 0.9847 46 1 2.9485 -1.5750 3.3758 47 1 3.3481 -0.9712 5.8068 48 1 4.9066 0.1507 7.3424 49 1 6.5767 1.7285 6.4770 50 1 7.1099 4.4531 6.4062 51 1 5.1169 1.0483 2.4814 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931687439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:21 Heat of formation + Delta-G solvation = -30.466418 kcal Electronic energy + Delta-G solvation = -32284.030950 eV Core-core repulsion = 28183.863047 eV Total energy + Delta-G solvation = -4100.167903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.32681 -39.36946 -37.66368 -36.49080 -34.90141 -34.35448 -33.02886 -31.51129 -31.10378 -29.71580 -28.09962 -27.80216 -26.77905 -25.20138 -24.55441 -23.99889 -22.27133 -20.86204 -20.56938 -20.18524 -18.93550 -18.14480 -17.27171 -16.64427 -16.19397 -15.82848 -15.59146 -15.37465 -15.12638 -14.90466 -14.66725 -14.48670 -14.41560 -14.14852 -13.60596 -13.29404 -13.18576 -12.96253 -12.77770 -12.70259 -12.37587 -12.29719 -12.10797 -12.02177 -11.68644 -11.63975 -11.53049 -11.34710 -11.21694 -11.01858 -10.74360 -10.56018 -10.47447 -10.41963 -10.02161 -9.66913 -9.63439 -9.42723 -9.11211 -8.79473 -8.49604 -8.32750 -7.31551 -6.74795 -6.57229 -4.25520 2.80487 2.91220 3.10412 3.15360 3.20525 3.27936 3.64639 3.84118 3.90916 4.04584 4.36213 4.58922 4.77288 4.83957 4.93166 5.02271 5.05346 5.10571 5.14631 5.17266 5.26656 5.35553 5.41691 5.47068 5.51002 5.55011 5.67061 5.70888 5.76959 5.81507 5.87539 6.00166 6.04432 6.08871 6.31438 6.47774 6.59583 6.87621 6.90210 6.92538 7.01027 7.13949 7.17802 7.19924 7.35513 7.43130 7.78386 7.90927 8.09387 8.20010 8.36353 8.53222 8.76720 9.01326 9.07296 9.19058 10.35424 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010056 B = 0.003753 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.803530 B = 7458.830848 C = 9150.866051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 H 0.103 0.897 4 C 0.047 3.953 5 N -0.525 5.525 6 C 0.015 3.985 7 C 0.065 3.935 8 O -0.389 6.389 9 C 0.064 3.936 10 C 0.020 3.980 11 N -0.616 5.616 12 C 0.085 3.915 13 C 0.708 3.292 14 O -0.567 6.567 15 N -0.682 5.682 16 C 0.169 3.831 17 C -0.261 4.261 18 C -0.094 4.094 19 C -0.170 4.170 20 C 0.119 3.881 21 C -0.457 4.457 22 H 0.075 0.925 23 C 0.074 3.926 24 N -0.803 5.803 25 Si 0.908 3.092 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.261 1.261 29 C -0.204 4.204 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.035 0.965 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.392 0.608 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.120 0.880 50 H 0.277 0.723 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 -11.698 -13.085 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.051 3.949 3 H 0.121 0.879 4 C -0.082 4.082 5 N -0.250 5.250 6 C -0.113 4.113 7 C -0.011 4.011 8 O -0.307 6.307 9 C -0.013 4.013 10 C -0.108 4.108 11 N -0.353 5.353 12 C -0.059 4.059 13 C 0.410 3.590 14 O -0.443 6.443 15 N -0.329 5.329 16 C 0.077 3.923 17 C -0.283 4.283 18 C -0.113 4.113 19 C -0.190 4.190 20 C 0.116 3.884 21 C -0.487 4.487 22 H 0.093 0.907 23 C -0.142 4.142 24 N -0.429 5.429 25 Si 0.733 3.267 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.185 1.185 29 C -0.225 4.225 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.227 0.773 47 H 0.104 0.896 48 H 0.108 0.892 49 H 0.138 0.862 50 H 0.088 0.912 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.254 -10.830 -12.754 19.121 hybrid contribution -0.198 0.205 -0.612 0.675 sum -9.453 -10.625 -13.366 19.517 Atomic orbital electron populations 1.22127 0.95025 1.02120 1.02675 1.20881 0.93001 0.98050 0.82981 0.87890 1.22527 0.87968 1.00868 0.96872 1.62108 1.05073 1.11689 1.46106 1.22910 0.96035 0.90707 1.01607 1.22662 0.92503 0.94199 0.91764 1.87958 1.66028 1.22789 1.53955 1.22592 0.91150 0.85431 1.02111 1.22751 0.96979 0.97890 0.93161 1.46728 1.54131 1.11647 1.22844 1.21577 1.00603 0.82823 1.00933 1.15791 0.78636 0.84693 0.79905 1.90936 1.61705 1.15056 1.76609 1.42729 1.48293 1.17744 1.24153 1.17238 0.90279 0.96842 0.87989 1.20017 1.06716 1.10375 0.91210 1.20450 0.96574 0.97558 0.96764 1.21382 1.01078 0.99991 0.96543 1.17505 0.89872 0.89639 0.91390 1.19516 1.20059 1.09142 0.99986 0.90685 1.25853 0.96795 0.97335 0.94221 1.69811 1.35997 1.26063 1.11022 0.86306 0.81373 0.79967 0.79074 1.19686 1.20209 1.18540 1.20974 0.97521 1.04651 0.99384 0.91598 0.92370 0.91723 0.90650 0.94001 0.94630 0.87823 0.91718 0.88302 0.92336 0.88926 0.90113 0.94421 0.92700 0.92066 0.91461 0.77290 0.89574 0.89197 0.86213 0.91178 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.17 37.16 0.34 -1.10 16 2 C 0.16 1.82 2.43 -67.93 -0.17 1.66 16 3 H 0.10 1.51 5.54 -51.93 -0.29 1.22 16 4 C 0.05 0.47 4.25 -3.82 -0.02 0.45 16 5 N -0.52 -6.33 4.45 -234.32 -1.04 -7.37 16 6 C 0.02 0.21 5.44 -3.71 -0.02 0.19 16 7 C 0.07 0.97 7.01 37.21 0.26 1.23 16 8 O -0.39 -5.60 10.83 -35.23 -0.38 -5.99 16 9 C 0.06 0.73 7.01 37.20 0.26 0.99 16 10 C 0.02 0.21 5.65 -3.71 -0.02 0.19 16 11 N -0.62 -8.18 2.49 -179.67 -0.45 -8.62 16 12 C 0.08 0.80 9.41 59.85 0.56 1.37 16 13 C 0.71 13.03 8.01 -86.92 -0.70 12.33 16 14 O -0.57 -12.85 12.34 5.29 0.07 -12.79 16 15 N -0.68 -12.61 5.22 -14.27 -0.07 -12.69 16 16 C 0.17 3.90 6.26 -83.76 -0.52 3.37 16 17 C -0.26 -5.87 9.97 -39.10 -0.39 -6.26 16 18 C -0.09 -2.25 10.02 -39.69 -0.40 -2.64 16 19 C -0.17 -4.54 8.66 -38.83 -0.34 -4.87 16 20 C 0.12 3.30 5.55 -106.85 -0.59 2.71 16 21 C -0.46 -12.67 9.06 -37.74 -0.34 -13.01 16 22 H 0.07 2.02 7.87 -52.49 -0.41 1.61 16 23 C 0.07 1.94 5.25 -17.35 -0.09 1.85 16 24 N -0.80 -21.58 10.81 55.55 0.60 -20.98 16 25 Si 0.91 19.55 29.57 -169.99 -5.03 14.52 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 28 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 29 C -0.20 -5.32 8.39 -38.69 -0.32 -5.64 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.63 7.73 -51.93 -0.40 0.23 16 34 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 1.69 5.42 -51.93 -0.28 1.41 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 42 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.55 6.29 -51.93 -0.33 0.22 16 45 H 0.07 0.49 6.43 -51.93 -0.33 0.15 16 46 H 0.39 5.82 6.51 -40.82 -0.27 5.56 16 47 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 48 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 49 H 0.12 3.29 6.18 -52.49 -0.32 2.97 16 50 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 51 H 0.11 2.89 6.44 -52.49 -0.34 2.55 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -32.14 397.53 -10.75 -42.89 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -7.94 Total: 12.23 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.49 Total: -7.20 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.96 Total: -49.66 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.32 Total: -18.78 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.14 -10.75 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.428 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds