Wall clock time and date at job start Wed Apr 1 2020 04:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46696 * 2 1 4 4 C 1.52998 * 109.47233 * 240.00088 * 2 1 3 5 5 N 1.46904 * 109.46822 * 184.99397 * 4 2 1 6 6 C 1.47009 * 111.00142 * 293.63699 * 5 4 2 7 7 C 1.53100 * 109.25504 * 177.60676 * 6 5 4 8 8 O 1.43015 * 109.25786 * 56.84761 * 7 6 5 9 9 C 1.43010 * 113.73924 * 301.32982 * 8 7 6 10 10 C 1.47016 * 110.99845 * 169.99585 * 5 4 2 11 11 N 1.46497 * 109.47065 * 119.99481 * 2 1 3 12 12 C 1.46503 * 119.99625 * 60.00696 * 11 2 1 13 13 C 1.34775 * 120.00287 * 240.00394 * 11 2 1 14 14 O 1.21589 * 119.99884 * 359.97438 * 13 11 2 15 15 N 1.34776 * 119.99708 * 180.02562 * 13 11 2 16 16 C 1.39959 * 119.99454 * 174.83259 * 15 13 11 17 17 C 1.39287 * 119.94862 * 146.38066 * 16 15 13 18 18 C 1.38483 * 120.43536 * 179.97438 * 17 16 15 19 19 C 1.37691 * 120.31979 * 359.97438 * 18 17 16 20 20 C 1.40748 * 119.87904 * 0.02562 * 19 18 17 21 21 C 1.41405 * 120.20493 * 180.02562 * 20 19 18 22 22 H 1.07996 * 119.99848 * 151.77406 * 21 20 19 23 23 C 1.39937 * 119.99802 * 331.76626 * 21 20 19 24 24 N 1.30819 * 120.00087 * 348.99157 * 23 21 20 25 25 Si 1.86801 * 119.99695 * 168.99315 * 23 21 20 26 26 H 1.48499 * 109.47043 * 94.98814 * 25 23 21 27 27 H 1.48496 * 109.47411 * 214.98988 * 25 23 21 28 28 H 1.48503 * 109.47426 * 334.99356 * 25 23 21 29 29 C 1.38236 * 119.95046 * 326.09894 * 16 15 13 30 30 H 1.08999 * 109.47068 * 60.00295 * 1 2 3 31 31 H 1.09003 * 109.46696 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47426 * 300.00051 * 1 2 3 33 33 H 1.08993 * 109.47070 * 304.99632 * 4 2 1 34 34 H 1.09001 * 109.47148 * 64.99831 * 4 2 1 35 35 H 1.08997 * 109.50534 * 297.53870 * 6 5 4 36 36 H 1.09002 * 109.50968 * 57.67372 * 6 5 4 37 37 H 1.08996 * 109.50919 * 296.91054 * 7 6 5 38 38 H 1.08997 * 109.54260 * 176.80486 * 7 6 5 39 39 H 1.09001 * 109.50413 * 298.72923 * 9 8 7 40 40 H 1.09006 * 109.54276 * 178.63067 * 9 8 7 41 41 H 1.08993 * 109.50967 * 302.33739 * 10 5 4 42 42 H 1.09003 * 109.50417 * 62.46369 * 10 5 4 43 43 H 1.09007 * 109.47204 * 89.99925 * 12 11 2 44 44 H 1.09003 * 109.47110 * 209.99620 * 12 11 2 45 45 H 1.08993 * 109.47071 * 329.99566 * 12 11 2 46 46 H 0.96997 * 120.00696 * 354.82859 * 15 13 11 47 47 H 1.08006 * 119.77969 * 359.97438 * 17 16 15 48 48 H 1.07999 * 119.84265 * 180.02562 * 18 17 16 49 49 H 1.07990 * 120.05873 * 180.02562 * 19 18 17 50 50 H 0.97008 * 119.99806 * 179.97438 * 24 23 21 51 51 H 1.08000 * 120.15847 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8265 -1.1904 6 6 4.1317 0.4999 -1.2796 7 6 5.6502 0.3495 -1.1545 8 8 6.1210 -0.5417 -2.1691 9 6 5.5309 -1.8431 -2.1114 10 6 4.0113 -1.7149 -2.2462 11 7 2.0183 -0.6905 1.1962 12 6 1.6645 -2.0931 1.4280 13 6 2.7931 -0.0355 2.0834 14 8 3.0872 1.1285 1.8907 15 7 3.2427 -0.6710 3.1836 16 6 4.1341 -0.0263 4.0488 17 6 4.0796 -0.2783 5.4176 18 6 4.9570 0.3536 6.2828 19 6 5.8942 1.2384 5.7986 20 6 5.9611 1.5030 4.4178 21 6 6.9213 2.4102 3.9130 22 1 7.2953 2.2958 2.9063 23 6 7.3867 3.4561 4.7178 24 7 6.7870 3.7283 5.8482 25 14 8.8642 4.4636 4.1780 26 1 8.3994 5.6851 3.4729 27 1 9.6602 4.8525 5.3696 28 1 9.7074 3.6541 3.2620 29 6 5.0711 0.8553 3.5430 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6055 -1.7197 -1.2951 34 1 1.7517 -0.1583 -2.1370 35 1 3.8888 0.9536 -2.2404 36 1 3.7611 1.1330 -0.4734 37 1 5.8962 -0.0544 -0.1725 38 1 6.1243 1.3233 -1.2767 39 1 5.7736 -2.3108 -1.1573 40 1 5.9182 -2.4555 -2.9258 41 1 3.5527 -2.6985 -2.1456 42 1 3.7665 -1.2966 -3.2225 43 1 2.4159 -2.7376 0.9717 44 1 1.6238 -2.2852 2.5002 45 1 0.6906 -2.3001 0.9847 46 1 2.9485 -1.5750 3.3758 47 1 3.3481 -0.9712 5.8068 48 1 4.9066 0.1507 7.3424 49 1 6.5767 1.7285 6.4770 50 1 7.1099 4.4531 6.4062 51 1 5.1169 1.0483 2.4814 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931687439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:20 Heat of formation + Delta-G solvation = -51.824129 kcal Electronic energy + Delta-G solvation = -32284.957090 eV Core-core repulsion = 28183.863047 eV Total energy + Delta-G solvation = -4101.094043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.63492 -40.51887 -39.28046 -37.82670 -36.12253 -36.01794 -34.79453 -32.59076 -32.14422 -31.69725 -29.57556 -28.98273 -27.72972 -27.20477 -25.48845 -25.03577 -23.74087 -22.74702 -21.87203 -21.42930 -20.22063 -19.67236 -18.90005 -17.71017 -17.37010 -17.27360 -17.05536 -16.68854 -16.43109 -16.30001 -16.05984 -15.85474 -15.63507 -15.26748 -15.05580 -14.68528 -14.58044 -14.27119 -14.02432 -13.91242 -13.67018 -13.50852 -13.22903 -13.16512 -13.00982 -12.87714 -12.80426 -12.56667 -12.55198 -12.45057 -12.36957 -12.19741 -11.88808 -11.68094 -11.54072 -11.48216 -11.21382 -10.94164 -10.72218 -10.61581 -9.56202 -9.31664 -9.30819 -8.61318 -8.50758 -6.34404 0.97347 1.08340 1.35971 1.48262 1.51809 1.74720 2.22576 2.34466 2.70125 2.80722 2.87867 3.12926 3.69481 3.79169 3.88727 3.96959 4.07446 4.17315 4.22170 4.27434 4.29268 4.35161 4.50054 4.56531 4.57776 4.66188 4.67761 4.69527 4.72687 4.77668 4.79479 4.87696 4.96656 4.98381 5.01231 5.11500 5.17382 5.18203 5.24298 5.30858 5.38153 5.66201 5.81116 5.88817 5.94445 6.06437 6.09522 6.11027 6.16491 6.20893 6.43260 6.74369 6.99344 7.05079 7.11620 7.73898 8.40527 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010056 B = 0.003753 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.803530 B = 7458.830848 C = 9150.866051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.150 3.850 3 H 0.063 0.937 4 C 0.053 3.947 5 N -0.540 5.540 6 C 0.027 3.973 7 C 0.071 3.929 8 O -0.402 6.402 9 C 0.055 3.945 10 C 0.026 3.974 11 N -0.603 5.603 12 C 0.076 3.924 13 C 0.700 3.300 14 O -0.618 6.618 15 N -0.673 5.673 16 C 0.177 3.823 17 C -0.250 4.250 18 C -0.093 4.093 19 C -0.196 4.196 20 C 0.088 3.912 21 C -0.499 4.499 22 H 0.063 0.937 23 C 0.034 3.966 24 N -0.833 5.833 25 Si 0.981 3.019 26 H -0.267 1.267 27 H -0.260 1.260 28 H -0.261 1.261 29 C -0.226 4.226 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.101 0.899 46 H 0.412 0.588 47 H 0.129 0.871 48 H 0.122 0.878 49 H 0.104 0.896 50 H 0.286 0.714 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.876 -14.364 -14.106 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.045 3.955 3 H 0.081 0.919 4 C -0.075 4.075 5 N -0.265 5.265 6 C -0.101 4.101 7 C -0.006 4.006 8 O -0.321 6.321 9 C -0.021 4.021 10 C -0.102 4.102 11 N -0.339 5.339 12 C -0.066 4.066 13 C 0.402 3.598 14 O -0.498 6.498 15 N -0.323 5.323 16 C 0.082 3.918 17 C -0.272 4.272 18 C -0.112 4.112 19 C -0.216 4.216 20 C 0.086 3.914 21 C -0.529 4.529 22 H 0.081 0.919 23 C -0.179 4.179 24 N -0.460 5.460 25 Si 0.802 3.198 26 H -0.192 1.192 27 H -0.184 1.184 28 H -0.185 1.185 29 C -0.248 4.248 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.120 0.880 46 H 0.251 0.749 47 H 0.147 0.853 48 H 0.140 0.860 49 H 0.122 0.878 50 H 0.096 0.904 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.449 -13.582 -13.803 22.496 hybrid contribution 0.319 0.879 -0.344 0.997 sum -11.129 -12.703 -14.147 22.031 Atomic orbital electron populations 1.22054 0.92295 1.03878 1.02682 1.21050 0.94953 0.96289 0.83157 0.91863 1.22551 0.86518 1.02434 0.96039 1.62090 1.06434 1.10554 1.47451 1.22623 0.95008 0.91822 1.00664 1.22471 0.93675 0.94095 0.90407 1.87933 1.66806 1.24106 1.53277 1.22882 0.92489 0.84077 1.02677 1.22787 0.95867 0.98769 0.92750 1.46773 1.52230 1.13054 1.21855 1.21897 1.02604 0.80060 1.02023 1.16057 0.79068 0.84340 0.80345 1.90916 1.63580 1.17667 1.77610 1.42513 1.47487 1.18476 1.23815 1.17304 0.89663 0.95609 0.89183 1.20430 1.06441 1.09848 0.90471 1.20816 0.95451 0.96218 0.98701 1.21331 1.02619 1.01796 0.95830 1.17838 0.90665 0.90447 0.92490 1.19709 1.22011 1.11017 1.00196 0.91921 1.26680 0.99349 0.97866 0.94051 1.69864 1.37295 1.26843 1.11973 0.85218 0.77463 0.78025 0.79106 1.19157 1.18361 1.18464 1.20899 0.99077 1.06621 0.98182 0.89882 0.89581 0.93531 0.87529 0.92739 0.93785 0.90970 0.95025 0.88775 0.93553 0.86065 0.87148 0.93684 0.91919 0.91325 0.88015 0.74877 0.85337 0.86029 0.87756 0.90351 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.17 71.98 0.66 -1.61 16 2 C 0.15 3.33 2.43 44.99 0.11 3.44 16 3 H 0.06 1.95 5.54 -2.39 -0.01 1.94 16 4 C 0.05 0.91 4.25 86.30 0.37 1.28 16 5 N -0.54 -12.39 4.45 -895.24 -3.98 -16.38 16 6 C 0.03 0.79 5.44 86.32 0.47 1.26 16 7 C 0.07 2.28 7.01 72.02 0.50 2.78 16 8 O -0.40 -11.84 10.83 -148.98 -1.61 -13.45 16 9 C 0.06 1.19 7.01 72.01 0.50 1.69 16 10 C 0.03 0.46 5.65 86.31 0.49 0.95 16 11 N -0.60 -15.22 2.49 -840.61 -2.09 -17.31 16 12 C 0.08 1.16 9.41 127.77 1.20 2.37 16 13 C 0.70 26.21 8.01 179.06 1.43 27.65 16 14 O -0.62 -29.89 12.34 -4.00 -0.05 -29.94 16 15 N -0.67 -24.59 5.22 -317.32 -1.66 -26.25 16 16 C 0.18 8.24 6.26 38.10 0.24 8.48 16 17 C -0.25 -10.87 9.97 22.58 0.23 -10.64 16 18 C -0.09 -4.38 10.02 22.20 0.22 -4.16 16 19 C -0.20 -10.85 8.66 22.75 0.20 -10.66 16 20 C 0.09 5.22 5.55 -21.31 -0.12 5.10 16 21 C -0.50 -29.73 9.06 23.46 0.21 -29.52 16 22 H 0.06 3.71 7.87 -2.91 -0.02 3.68 16 23 C 0.03 1.84 5.25 85.26 0.45 2.29 16 24 N -0.83 -46.62 10.81 21.82 0.24 -46.38 16 25 Si 0.98 41.70 29.57 68.60 2.03 43.73 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 28 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 29 C -0.23 -12.55 8.39 22.85 0.19 -12.36 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 0.83 6.66 -2.39 -0.02 0.81 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 1.22 7.73 -2.39 -0.02 1.20 16 34 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 35 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 2.59 5.42 -2.39 -0.01 2.58 16 37 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.11 1.35 8.09 -2.39 -0.02 1.33 16 42 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.07 0.97 6.29 -2.39 -0.02 0.96 16 45 H 0.10 0.91 6.43 -2.39 -0.02 0.89 16 46 H 0.41 11.32 6.51 -92.71 -0.60 10.72 16 47 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 48 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 49 H 0.10 6.01 6.18 -2.92 -0.02 6.00 16 50 H 0.29 14.42 8.30 -92.70 -0.77 13.65 16 51 H 0.08 4.98 6.44 -2.91 -0.02 4.96 16 Total: -1.00 -77.64 397.53 0.57 -77.08 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: 0.34 Total: 40.57 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 7.36 Total: -11.67 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -7.49 Total: -106.32 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -1.66 Total: -43.39 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -77.64 0.57 -77.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.254 kcal (2) G-P(sol) polarization free energy of solvation -77.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds