Wall clock time and date at job start Wed Apr 1 2020 04:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47266 * 2 1 4 4 O 1.42903 * 109.46890 * 239.99857 * 2 1 3 5 5 C 1.52998 * 109.46913 * 120.00403 * 2 1 3 6 6 N 1.46901 * 109.46896 * 179.43816 * 5 2 1 7 7 C 1.46900 * 111.00038 * 282.41746 * 6 5 2 8 8 C 1.53241 * 109.33739 * 187.25592 * 7 6 5 9 9 N 1.47082 * 108.51827 * 306.16668 * 8 7 6 10 10 C 1.34783 * 120.87897 * 231.19021 * 9 8 7 11 11 O 1.21588 * 119.99975 * 3.59517 * 10 9 8 12 12 N 1.34782 * 119.99758 * 183.60078 * 10 9 8 13 13 C 1.39943 * 119.99817 * 179.73045 * 12 10 9 14 14 C 1.38871 * 120.06913 * 33.96997 * 13 12 10 15 15 C 1.38121 * 119.92887 * 179.74173 * 14 13 12 16 16 C 1.38279 * 120.06430 * 0.55809 * 15 14 13 17 17 C 1.50704 * 119.92613 * 179.72023 * 16 15 14 18 18 C 1.50708 * 109.47079 * 269.97872 * 17 16 15 19 19 H 1.08005 * 119.99553 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00031 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00019 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00054 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47420 * 59.99837 * 22 20 18 24 24 H 1.48502 * 109.47360 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46984 * 299.99799 * 22 20 18 26 26 C 1.38274 * 120.14476 * 359.69339 * 16 15 14 27 27 C 1.38114 * 120.07341 * 0.02811 * 26 16 15 28 28 C 1.47073 * 118.23888 * 51.46440 * 9 8 7 29 29 C 1.46901 * 110.99857 * 46.71937 * 6 5 2 30 30 H 1.09000 * 109.46788 * 300.00279 * 1 2 3 31 31 H 1.08997 * 109.46928 * 59.99775 * 1 2 3 32 32 H 1.09003 * 109.47168 * 180.02562 * 1 2 3 33 33 H 0.96703 * 113.99877 * 300.00587 * 4 2 1 34 34 H 1.08995 * 109.47843 * 59.44045 * 5 2 1 35 35 H 1.08999 * 109.47251 * 299.43355 * 5 2 1 36 36 H 1.08992 * 109.49288 * 67.29417 * 7 6 5 37 37 H 1.08992 * 109.49267 * 307.21014 * 7 6 5 38 38 H 1.09000 * 109.62617 * 186.46584 * 8 7 6 39 39 H 1.08999 * 109.63192 * 65.87746 * 8 7 6 40 40 H 0.96992 * 120.00084 * 359.45319 * 12 10 9 41 41 H 1.08001 * 120.03715 * 0.02562 * 14 13 12 42 42 H 1.08000 * 119.96277 * 180.27262 * 15 14 13 43 43 H 1.09007 * 109.47133 * 29.97309 * 17 16 15 44 44 H 1.08993 * 109.47131 * 149.97467 * 17 16 15 45 45 H 0.97000 * 120.00071 * 180.02562 * 21 20 18 46 46 H 1.08001 * 119.96606 * 180.02562 * 26 16 15 47 47 H 1.07994 * 120.03844 * 179.97438 * 27 26 16 48 48 H 1.08998 * 109.63218 * 68.24872 * 28 9 8 49 49 H 1.09002 * 109.63115 * 188.82706 * 28 9 8 50 50 H 1.08996 * 109.49496 * 292.70128 * 29 6 5 51 51 H 1.09002 * 109.49342 * 52.76384 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5089 -0.7331 1.2424 7 6 4.0230 -1.7527 0.3182 8 6 5.5438 -1.8578 0.4735 9 7 6.1243 -0.5168 0.3056 10 6 7.1407 -0.3057 -0.5541 11 8 7.5465 -1.2157 -1.2510 12 7 7.7074 0.9141 -0.6411 13 6 8.7664 1.1318 -1.5296 14 6 8.8068 0.4572 -2.7427 15 6 9.8506 0.6783 -3.6198 16 6 10.8607 1.5617 -3.2859 17 6 12.0014 1.7958 -4.2425 18 6 13.1082 0.8144 -3.9543 19 1 12.9969 0.0935 -3.1578 20 6 14.2633 0.8375 -4.7068 21 7 14.3990 1.7156 -5.6764 22 14 15.6354 -0.3785 -4.3491 23 1 15.1259 -1.7633 -4.5165 24 1 16.7595 -0.1479 -5.2918 25 1 16.1117 -0.1914 -2.9550 26 6 10.8261 2.2311 -2.0765 27 6 9.7821 2.0187 -1.1976 28 6 5.5704 0.5864 1.1051 29 6 4.0445 0.5964 0.9206 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.7209 -1.5953 -1.2329 34 1 1.6685 -1.7460 1.2543 35 1 1.6849 -0.2018 2.1392 36 1 3.7806 -1.4703 -0.7062 37 1 3.5666 -2.7153 0.5482 38 1 5.9441 -2.5279 -0.2873 39 1 5.7852 -2.2396 1.4655 40 1 7.3786 1.6420 -0.0908 41 1 8.0205 -0.2363 -3.0021 42 1 9.8803 0.1572 -4.5653 43 1 11.6515 1.6586 -5.2658 44 1 12.3758 2.8121 -4.1198 45 1 15.2115 1.7316 -6.2060 46 1 11.6163 2.9207 -1.8188 47 1 9.7559 2.5415 -0.2530 48 1 5.8142 0.4349 2.1566 49 1 5.9882 1.5329 0.7621 50 1 3.8019 0.8461 -0.1122 51 1 3.6034 1.3374 1.5874 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932568104.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:55 Heat of formation + Delta-G solvation = -34.241760 kcal Electronic energy + Delta-G solvation = -30409.074784 eV Core-core repulsion = 26308.743170 eV Total energy + Delta-G solvation = -4100.331614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89715 -39.70813 -38.34393 -37.03607 -34.89455 -34.60335 -32.97028 -31.95852 -31.33315 -30.31788 -30.18850 -28.35665 -26.47550 -24.94541 -24.33190 -23.28650 -22.41933 -22.20993 -21.36125 -20.26804 -19.46278 -18.54223 -17.15385 -16.94974 -16.55352 -16.23675 -15.81647 -15.65794 -15.57866 -15.34044 -14.92998 -14.82317 -14.43798 -14.17604 -14.13832 -13.77158 -13.25416 -13.08386 -12.93913 -12.80288 -12.72856 -12.48003 -12.45443 -12.16697 -11.94330 -11.88113 -11.60184 -11.53894 -11.38339 -11.28098 -11.16804 -10.88301 -10.71733 -10.56827 -10.30604 -10.13369 -9.68977 -9.43145 -9.21507 -8.98520 -8.45443 -8.35491 -8.19880 -7.27482 -5.97319 -4.00878 2.02112 2.15460 2.48838 3.20975 3.37837 3.40966 3.41711 3.45641 3.72847 3.78153 4.12446 4.42112 4.45128 4.46460 4.55432 4.62982 4.65879 4.67818 4.85183 4.95968 5.07111 5.13247 5.16698 5.21210 5.28617 5.36551 5.42815 5.48751 5.49718 5.53863 5.56014 5.67588 5.82746 5.99903 6.09283 6.15441 6.28646 6.31421 6.45427 6.55968 6.67413 6.75961 7.03097 7.05609 7.08736 7.24947 7.29867 7.58126 7.80850 7.86330 7.94305 7.98774 8.39979 8.56555 9.04425 9.62610 11.12132 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.001860 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.206745 B =15051.087524 C =15169.971246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.063 3.937 3 H 0.101 0.899 4 O -0.557 6.557 5 C 0.023 3.977 6 N -0.529 5.529 7 C 0.026 3.974 8 C 0.135 3.865 9 N -0.630 5.630 10 C 0.706 3.294 11 O -0.569 6.569 12 N -0.681 5.681 13 C 0.121 3.879 14 C -0.116 4.116 15 C -0.108 4.108 16 C -0.045 4.045 17 C 0.049 3.951 18 C -0.510 4.510 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.108 4.108 27 C -0.146 4.146 28 C 0.116 3.884 29 C 0.036 3.964 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.374 0.626 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.398 0.602 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.262 0.738 46 H 0.121 0.879 47 H 0.112 0.888 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.053 0.947 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.145 -1.945 17.216 34.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.002 3.998 3 H 0.118 0.882 4 O -0.362 6.362 5 C -0.105 4.105 6 N -0.252 5.252 7 C -0.103 4.103 8 C 0.012 3.988 9 N -0.368 5.368 10 C 0.408 3.592 11 O -0.445 6.445 12 N -0.330 5.330 13 C 0.029 3.971 14 C -0.136 4.136 15 C -0.127 4.127 16 C -0.046 4.046 17 C 0.012 3.988 18 C -0.548 4.548 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.127 4.127 27 C -0.166 4.166 28 C -0.008 4.008 29 C -0.093 4.093 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.222 0.778 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.235 0.765 41 H 0.145 0.855 42 H 0.138 0.862 43 H 0.047 0.953 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.139 0.861 47 H 0.130 0.870 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.071 0.929 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -29.300 -2.132 16.957 33.920 hybrid contribution -0.033 -0.531 -0.003 0.532 sum -29.332 -2.663 16.954 33.984 Atomic orbital electron populations 1.22452 0.96112 1.02635 1.02954 1.22732 0.93585 0.97736 0.85722 0.88168 1.86664 1.76279 1.29208 1.44097 1.22964 0.88098 1.01649 0.97832 1.62192 1.06387 1.05489 1.51155 1.22835 0.95147 0.95378 0.96916 1.21562 0.91501 0.83232 1.02550 1.47270 1.35838 1.10213 1.43503 1.15820 0.79763 0.83067 0.80556 1.90947 1.64829 1.42652 1.46114 1.42631 1.35757 1.10810 1.43834 1.17318 0.88913 1.00943 0.89969 1.21100 1.00044 1.00355 0.92120 1.21007 0.93780 0.98329 0.99571 1.20697 0.95425 0.92843 0.95611 1.18339 0.89877 0.97665 0.92932 1.21057 1.00015 1.16804 1.16936 0.92498 1.25005 0.98429 0.95849 0.95078 1.69951 1.27541 1.35444 1.20534 0.86603 0.81355 0.81686 0.78083 1.20155 1.21289 1.20206 1.20846 0.97166 1.00716 0.93945 1.20695 0.94222 1.01850 0.99854 1.21797 0.92907 0.89692 0.96392 1.22612 0.94764 0.91218 1.00688 0.91445 0.91738 0.92234 0.77830 0.90370 0.89576 0.91068 0.90143 0.88397 0.91345 0.76487 0.85485 0.86168 0.95338 0.95361 0.92873 0.86071 0.86971 0.90510 0.90267 0.92927 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.67 9.53 37.16 0.35 -0.31 16 2 C 0.06 0.31 2.91 -26.73 -0.08 0.23 16 3 H 0.10 0.57 6.52 -51.93 -0.34 0.24 16 4 O -0.56 -3.79 10.20 -35.23 -0.36 -4.15 16 5 C 0.02 0.10 5.33 -3.82 -0.02 0.08 16 6 N -0.53 -3.40 4.83 -234.03 -1.13 -4.53 16 7 C 0.03 0.19 5.07 -3.70 -0.02 0.17 16 8 C 0.13 1.32 6.61 -3.60 -0.02 1.29 16 9 N -0.63 -6.92 3.00 -177.90 -0.53 -7.45 16 10 C 0.71 10.61 8.13 -86.91 -0.71 9.90 16 11 O -0.57 -10.93 13.30 5.29 0.07 -10.86 16 12 N -0.68 -9.49 5.25 -14.22 -0.07 -9.57 16 13 C 0.12 2.13 6.30 -83.69 -0.53 1.60 16 14 C -0.12 -2.28 8.67 -39.39 -0.34 -2.63 16 15 C -0.11 -2.31 9.69 -39.61 -0.38 -2.70 16 16 C -0.05 -1.02 5.07 -104.59 -0.53 -1.55 16 17 C 0.05 1.29 5.10 -29.03 -0.15 1.14 16 18 C -0.51 -14.74 9.09 -34.44 -0.31 -15.05 16 19 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 22 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.11 -2.16 9.69 -39.61 -0.38 -2.54 16 27 C -0.15 -2.49 9.97 -39.39 -0.39 -2.88 16 28 C 0.12 0.87 6.57 -3.37 -0.02 0.85 16 29 C 0.04 0.23 4.53 -3.46 -0.02 0.22 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.37 1.43 8.89 45.56 0.41 1.84 16 34 H 0.08 0.29 7.82 -51.93 -0.41 -0.12 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.63 5.59 -51.93 -0.29 0.34 16 37 H 0.08 0.46 7.91 -51.93 -0.41 0.05 16 38 H 0.10 1.13 7.04 -51.93 -0.37 0.76 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.40 4.08 6.35 -40.82 -0.26 3.82 16 41 H 0.13 2.53 6.28 -52.49 -0.33 2.20 16 42 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 43 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 47 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.49 5.73 -51.93 -0.30 0.19 16 50 H 0.05 0.44 6.51 -51.93 -0.34 0.10 16 51 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -35.19 400.43 -11.16 -46.35 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.24 Total: 3.82 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.65 Total: -10.61 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -1.00 Total: -47.77 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.29 Total: -15.01 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.19 -11.16 -46.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932568104.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.110 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds