Wall clock time and date at job start Wed Apr 1 2020 04:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47266 * 2 1 4 4 O 1.42903 * 109.46890 * 239.99857 * 2 1 3 5 5 C 1.52998 * 109.46913 * 120.00403 * 2 1 3 6 6 N 1.46901 * 109.46896 * 179.43816 * 5 2 1 7 7 C 1.46900 * 111.00038 * 282.41746 * 6 5 2 8 8 C 1.53241 * 109.33739 * 187.25592 * 7 6 5 9 9 N 1.47082 * 108.51827 * 306.16668 * 8 7 6 10 10 C 1.34783 * 120.87897 * 231.19021 * 9 8 7 11 11 O 1.21588 * 119.99975 * 3.59517 * 10 9 8 12 12 N 1.34782 * 119.99758 * 183.60078 * 10 9 8 13 13 C 1.39943 * 119.99817 * 179.73045 * 12 10 9 14 14 C 1.38871 * 120.06913 * 33.96997 * 13 12 10 15 15 C 1.38121 * 119.92887 * 179.74173 * 14 13 12 16 16 C 1.38279 * 120.06430 * 0.55809 * 15 14 13 17 17 C 1.50704 * 119.92613 * 179.72023 * 16 15 14 18 18 C 1.50708 * 109.47079 * 269.97872 * 17 16 15 19 19 H 1.08005 * 119.99553 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00031 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00019 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00054 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47420 * 59.99837 * 22 20 18 24 24 H 1.48502 * 109.47360 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46984 * 299.99799 * 22 20 18 26 26 C 1.38274 * 120.14476 * 359.69339 * 16 15 14 27 27 C 1.38114 * 120.07341 * 0.02811 * 26 16 15 28 28 C 1.47073 * 118.23888 * 51.46440 * 9 8 7 29 29 C 1.46901 * 110.99857 * 46.71937 * 6 5 2 30 30 H 1.09000 * 109.46788 * 300.00279 * 1 2 3 31 31 H 1.08997 * 109.46928 * 59.99775 * 1 2 3 32 32 H 1.09003 * 109.47168 * 180.02562 * 1 2 3 33 33 H 0.96703 * 113.99877 * 300.00587 * 4 2 1 34 34 H 1.08995 * 109.47843 * 59.44045 * 5 2 1 35 35 H 1.08999 * 109.47251 * 299.43355 * 5 2 1 36 36 H 1.08992 * 109.49288 * 67.29417 * 7 6 5 37 37 H 1.08992 * 109.49267 * 307.21014 * 7 6 5 38 38 H 1.09000 * 109.62617 * 186.46584 * 8 7 6 39 39 H 1.08999 * 109.63192 * 65.87746 * 8 7 6 40 40 H 0.96992 * 120.00084 * 359.45319 * 12 10 9 41 41 H 1.08001 * 120.03715 * 0.02562 * 14 13 12 42 42 H 1.08000 * 119.96277 * 180.27262 * 15 14 13 43 43 H 1.09007 * 109.47133 * 29.97309 * 17 16 15 44 44 H 1.08993 * 109.47131 * 149.97467 * 17 16 15 45 45 H 0.97000 * 120.00071 * 180.02562 * 21 20 18 46 46 H 1.08001 * 119.96606 * 180.02562 * 26 16 15 47 47 H 1.07994 * 120.03844 * 179.97438 * 27 26 16 48 48 H 1.08998 * 109.63218 * 68.24872 * 28 9 8 49 49 H 1.09002 * 109.63115 * 188.82706 * 28 9 8 50 50 H 1.08996 * 109.49496 * 292.70128 * 29 6 5 51 51 H 1.09002 * 109.49342 * 52.76384 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5089 -0.7331 1.2424 7 6 4.0230 -1.7527 0.3182 8 6 5.5438 -1.8578 0.4735 9 7 6.1243 -0.5168 0.3056 10 6 7.1407 -0.3057 -0.5541 11 8 7.5465 -1.2157 -1.2510 12 7 7.7074 0.9141 -0.6411 13 6 8.7664 1.1318 -1.5296 14 6 8.8068 0.4572 -2.7427 15 6 9.8506 0.6783 -3.6198 16 6 10.8607 1.5617 -3.2859 17 6 12.0014 1.7958 -4.2425 18 6 13.1082 0.8144 -3.9543 19 1 12.9969 0.0935 -3.1578 20 6 14.2633 0.8375 -4.7068 21 7 14.3990 1.7156 -5.6764 22 14 15.6354 -0.3785 -4.3491 23 1 15.1259 -1.7633 -4.5165 24 1 16.7595 -0.1479 -5.2918 25 1 16.1117 -0.1914 -2.9550 26 6 10.8261 2.2311 -2.0765 27 6 9.7821 2.0187 -1.1976 28 6 5.5704 0.5864 1.1051 29 6 4.0445 0.5964 0.9206 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.7209 -1.5953 -1.2329 34 1 1.6685 -1.7460 1.2543 35 1 1.6849 -0.2018 2.1392 36 1 3.7806 -1.4703 -0.7062 37 1 3.5666 -2.7153 0.5482 38 1 5.9441 -2.5279 -0.2873 39 1 5.7852 -2.2396 1.4655 40 1 7.3786 1.6420 -0.0908 41 1 8.0205 -0.2363 -3.0021 42 1 9.8803 0.1572 -4.5653 43 1 11.6515 1.6586 -5.2658 44 1 12.3758 2.8121 -4.1198 45 1 15.2115 1.7316 -6.2060 46 1 11.6163 2.9207 -1.8188 47 1 9.7559 2.5415 -0.2530 48 1 5.8142 0.4349 2.1566 49 1 5.9882 1.5329 0.7621 50 1 3.8019 0.8461 -0.1122 51 1 3.6034 1.3374 1.5874 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932568104.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:54 Heat of formation + Delta-G solvation = -59.453238 kcal Electronic energy + Delta-G solvation = -30410.168035 eV Core-core repulsion = 26308.743170 eV Total energy + Delta-G solvation = -4101.424866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.93992 -40.50575 -39.60782 -37.78930 -36.34310 -35.42248 -34.89384 -32.71251 -31.97099 -31.81206 -31.74066 -29.19933 -28.09783 -25.71355 -25.06979 -24.78914 -23.82510 -23.10685 -22.25370 -21.64270 -20.49946 -19.51534 -18.50892 -18.29539 -17.49886 -17.09914 -16.91875 -16.72428 -16.43574 -16.17479 -15.93966 -15.88058 -15.75831 -15.37204 -15.10165 -14.76882 -14.61006 -14.46444 -14.24356 -13.81860 -13.65191 -13.44443 -13.35512 -13.27956 -13.14196 -12.82484 -12.67420 -12.58919 -12.49388 -12.39972 -12.13967 -12.07965 -12.01705 -11.77747 -11.70754 -11.53451 -11.32222 -11.16217 -10.92447 -10.59125 -9.85500 -9.75226 -9.03217 -8.80508 -8.17601 -6.32148 0.48899 0.58585 1.38877 1.42073 1.46288 1.50386 2.01865 2.40501 2.77095 2.92585 3.02295 3.10965 3.44077 3.74586 3.88126 4.02038 4.03834 4.08079 4.17014 4.17494 4.23424 4.32589 4.39653 4.44262 4.50029 4.58434 4.64902 4.67341 4.71229 4.74425 4.83077 4.85722 4.92085 4.97031 5.11282 5.14025 5.17994 5.25046 5.27416 5.33773 5.41392 5.48693 5.50307 5.62870 5.76514 5.81858 6.03280 6.09035 6.09886 6.14244 6.27410 6.75694 6.79815 6.80875 7.35851 7.42521 8.89658 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.001860 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.206745 B =15051.087524 C =15169.971246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.064 3.936 3 H 0.090 0.910 4 O -0.580 6.580 5 C 0.027 3.973 6 N -0.530 5.530 7 C 0.036 3.964 8 C 0.130 3.870 9 N -0.621 5.621 10 C 0.699 3.301 11 O -0.618 6.618 12 N -0.668 5.668 13 C 0.136 3.864 14 C -0.124 4.124 15 C -0.120 4.120 16 C -0.076 4.076 17 C 0.058 3.942 18 C -0.530 4.530 19 H 0.050 0.950 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.266 1.266 26 C -0.111 4.111 27 C -0.128 4.128 28 C 0.110 3.890 29 C 0.040 3.960 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.384 0.616 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.420 0.580 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.001 0.999 44 H 0.010 0.990 45 H 0.266 0.734 46 H 0.129 0.871 47 H 0.160 0.840 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.033 0.967 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.752 -1.895 20.765 37.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.004 3.996 3 H 0.108 0.892 4 O -0.388 6.388 5 C -0.101 4.101 6 N -0.254 5.254 7 C -0.093 4.093 8 C 0.007 3.993 9 N -0.358 5.358 10 C 0.401 3.599 11 O -0.498 6.498 12 N -0.319 5.319 13 C 0.042 3.958 14 C -0.144 4.144 15 C -0.139 4.139 16 C -0.077 4.077 17 C 0.021 3.979 18 C -0.568 4.568 19 H 0.069 0.931 20 C -0.193 4.193 21 N -0.568 5.568 22 Si 0.788 3.212 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.129 4.129 27 C -0.148 4.148 28 C -0.013 4.013 29 C -0.089 4.089 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.260 0.740 41 H 0.139 0.861 42 H 0.126 0.874 43 H 0.019 0.981 44 H 0.029 0.971 45 H 0.075 0.925 46 H 0.147 0.853 47 H 0.177 0.823 48 H 0.111 0.889 49 H 0.112 0.888 50 H 0.051 0.949 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -30.977 -2.056 20.567 37.240 hybrid contribution 0.301 -0.549 -1.034 1.209 sum -30.676 -2.604 19.533 36.460 Atomic orbital electron populations 1.22391 0.95120 1.03201 1.02885 1.22738 0.94291 0.97141 0.85427 0.89179 1.86637 1.76826 1.30229 1.45137 1.23005 0.86613 1.02493 0.97944 1.62223 1.07724 1.05089 1.50326 1.22701 0.93400 0.96778 0.96372 1.21671 0.93054 0.82347 1.02198 1.47367 1.34315 1.11705 1.42445 1.16056 0.80409 0.82643 0.80813 1.90922 1.66498 1.44159 1.48183 1.42425 1.34759 1.11430 1.43259 1.17384 0.89589 0.99458 0.89370 1.21062 0.99398 1.00901 0.93075 1.20914 0.94502 0.98649 0.99828 1.20408 0.95128 0.95507 0.96667 1.18081 0.90970 0.96169 0.92632 1.21355 1.01186 1.17248 1.16971 0.93136 1.25900 1.00992 0.97686 0.94721 1.70069 1.28420 1.36969 1.21353 0.85524 0.78172 0.79043 0.78464 1.19784 1.20249 1.19099 1.20965 0.98394 1.00341 0.93245 1.20990 0.92256 1.00907 1.00664 1.22120 0.93569 0.88970 0.96608 1.22603 0.94095 0.91947 1.00235 0.90255 0.93032 0.91364 0.76636 0.89289 0.88127 0.92738 0.88238 0.90872 0.90246 0.73957 0.86117 0.87360 0.98107 0.97139 0.92548 0.85323 0.82289 0.88917 0.88819 0.94851 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.95 9.53 71.98 0.69 -0.27 16 2 C 0.06 0.51 2.91 30.59 0.09 0.60 16 3 H 0.09 0.89 6.52 -2.39 -0.02 0.87 16 4 O -0.58 -7.41 10.20 -148.98 -1.52 -8.93 16 5 C 0.03 0.16 5.33 86.30 0.46 0.62 16 6 N -0.53 -5.35 4.83 -894.33 -4.32 -9.67 16 7 C 0.04 0.47 5.07 86.38 0.44 0.91 16 8 C 0.13 2.41 6.61 86.35 0.57 2.98 16 9 N -0.62 -12.64 3.00 -835.03 -2.51 -15.14 16 10 C 0.70 20.31 8.13 179.05 1.46 21.76 16 11 O -0.62 -24.07 13.30 -3.99 -0.05 -24.12 16 12 N -0.67 -17.11 5.25 -317.16 -1.66 -18.77 16 13 C 0.14 4.57 6.30 38.15 0.24 4.81 16 14 C -0.12 -4.97 8.67 22.39 0.19 -4.77 16 15 C -0.12 -5.39 9.69 22.25 0.22 -5.17 16 16 C -0.08 -3.59 5.07 -19.84 -0.10 -3.69 16 17 C 0.06 3.26 5.10 29.11 0.15 3.41 16 18 C -0.53 -31.65 9.09 25.60 0.23 -31.42 16 19 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 20 C 0.01 0.31 5.46 84.65 0.46 0.77 16 21 N -0.93 -57.29 13.29 21.44 0.28 -57.00 16 22 Si 0.96 46.02 29.54 68.60 2.03 48.05 16 23 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 C -0.11 -4.36 9.69 22.25 0.22 -4.15 16 27 C -0.13 -4.04 9.97 22.39 0.22 -3.81 16 28 C 0.11 1.30 6.57 86.51 0.57 1.87 16 29 C 0.04 0.41 4.53 86.54 0.39 0.80 16 30 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.38 2.61 8.89 -74.06 -0.66 1.95 16 34 H 0.09 0.36 7.82 -2.39 -0.02 0.34 16 35 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.05 0.93 5.59 -2.39 -0.01 0.92 16 37 H 0.10 0.92 7.91 -2.39 -0.02 0.90 16 38 H 0.07 1.73 7.04 -2.39 -0.02 1.72 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.42 7.06 6.35 -92.71 -0.59 6.47 16 41 H 0.12 5.00 6.28 -2.91 -0.02 4.98 16 42 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 43 H 0.00 0.04 8.08 -2.38 -0.02 0.02 16 44 H 0.01 0.60 8.08 -2.39 -0.02 0.58 16 45 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 47 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 48 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.09 0.81 5.73 -2.39 -0.01 0.80 16 50 H 0.03 0.49 6.51 -2.39 -0.02 0.48 16 51 H 0.11 0.60 8.11 -2.39 -0.02 0.58 16 Total: -1.00 -79.61 400.43 -1.56 -81.17 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -0.30 Total: 19.17 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 6.49 Total: -14.75 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -8.21 Total: -100.59 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.57 Total: -33.05 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -79.61 -1.56 -81.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932568104.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.715 kcal (2) G-P(sol) polarization free energy of solvation -79.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds