Wall clock time and date at job start Wed Apr 1 2020 04:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47073 * 2 1 4 4 N 1.46490 * 109.47174 * 240.00213 * 2 1 3 5 5 C 1.34782 * 120.00274 * 84.99964 * 4 2 1 6 6 O 1.21583 * 119.99782 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99907 * 179.97438 * 5 4 2 8 8 C 1.39950 * 119.99559 * 185.10612 * 7 5 4 9 9 C 1.38864 * 120.07006 * 213.07652 * 8 7 5 10 10 C 1.38109 * 119.92790 * 179.77752 * 9 8 7 11 11 C 1.38278 * 120.07239 * 0.50114 * 10 9 8 12 12 C 1.50698 * 119.93265 * 179.76903 * 11 10 9 13 13 C 1.50698 * 109.47258 * 269.98051 * 12 11 10 14 14 H 1.07993 * 120.00175 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00064 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99654 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00289 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47057 * 60.00354 * 17 15 13 19 19 H 1.48500 * 109.47494 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47234 * 300.00593 * 17 15 13 21 21 C 1.38287 * 120.13882 * 359.75400 * 11 10 9 22 22 C 1.38117 * 120.06838 * 359.97438 * 21 11 10 23 23 C 1.52999 * 109.46849 * 120.00121 * 2 1 3 24 24 H 1.09003 * 109.50912 * 299.99473 * 23 2 1 25 25 C 1.53099 * 109.50423 * 179.91585 * 23 2 1 26 26 N 1.47020 * 109.25395 * 183.26149 * 25 23 2 27 27 C 1.46905 * 110.99607 * 182.34955 * 26 25 23 28 28 C 1.47011 * 110.79235 * 58.54891 * 26 25 23 29 29 C 1.53102 * 109.25459 * 301.40691 * 28 26 25 30 30 O 1.43014 * 109.50909 * 60.08542 * 23 2 1 31 31 H 1.09001 * 109.47419 * 300.00117 * 1 2 3 32 32 H 1.09004 * 109.47482 * 59.99607 * 1 2 3 33 33 H 1.08995 * 109.47736 * 179.97438 * 1 2 3 34 34 H 0.97008 * 120.00157 * 265.00149 * 4 2 1 35 35 H 0.96993 * 120.00366 * 5.38963 * 7 5 4 36 36 H 1.08002 * 120.03318 * 0.02562 * 9 8 7 37 37 H 1.08008 * 119.96807 * 180.25630 * 10 9 8 38 38 H 1.09003 * 109.46952 * 29.98359 * 12 11 10 39 39 H 1.09007 * 109.47016 * 149.98183 * 12 11 10 40 40 H 0.97000 * 119.99531 * 179.97438 * 16 15 13 41 41 H 1.07997 * 119.96618 * 179.97438 * 21 11 10 42 42 H 1.07994 * 120.03176 * 180.02562 * 22 21 11 43 43 H 1.09000 * 109.50717 * 303.14820 * 25 23 2 44 44 H 1.09000 * 109.51080 * 63.27949 * 25 23 2 45 45 H 1.09003 * 109.46944 * 300.26964 * 27 26 25 46 46 H 1.08994 * 109.47299 * 60.26871 * 27 26 25 47 47 H 1.08995 * 109.46949 * 180.27754 * 27 26 25 48 48 H 1.08995 * 109.51000 * 181.47229 * 28 26 25 49 49 H 1.09006 * 109.50695 * 61.33642 * 28 26 25 50 50 H 1.08997 * 109.50913 * 296.91441 * 29 28 26 51 51 H 1.08999 * 109.50440 * 176.78074 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 2.1470 -0.0182 -2.3571 6 8 1.8574 1.1614 -2.4118 7 7 2.5968 -0.6534 -3.4574 8 6 2.8321 0.0668 -4.6340 9 6 2.6212 -0.5308 -5.8696 10 6 2.8499 0.1842 -7.0289 11 6 3.2985 1.4904 -6.9603 12 6 3.5521 2.2659 -8.2273 13 6 4.9807 2.0639 -8.6625 14 1 5.6390 1.4364 -8.0802 15 6 5.4470 2.6795 -9.8048 16 7 4.6451 3.4433 -10.5142 17 14 7.2175 2.4286 -10.3447 18 1 7.4600 0.9844 -10.5910 19 1 7.4674 3.1929 -11.5931 20 1 8.1329 2.9094 -9.2788 21 6 3.5147 2.0866 -5.7314 22 6 3.2824 1.3788 -4.5684 23 6 2.0399 -0.7213 1.2492 24 1 1.6770 -0.2079 2.1397 25 6 3.5709 -0.7236 1.2490 26 7 4.0547 -1.4850 2.4099 27 6 5.5221 -1.4649 2.4781 28 6 3.5477 -2.8646 2.3772 29 6 2.0170 -2.8398 2.3667 30 8 1.5653 -2.0704 1.2490 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 2.7534 -1.6103 -3.4350 36 1 2.2747 -1.5523 -5.9239 37 1 2.6821 -0.2786 -7.9902 38 1 2.8805 1.9130 -9.0099 39 1 3.3739 3.3259 -8.0463 40 1 4.9732 3.8766 -11.3176 41 1 3.8655 3.1068 -5.6811 42 1 3.4510 1.8452 -3.6090 43 1 3.9340 -1.1887 0.3325 44 1 3.9365 0.3016 1.3072 45 1 5.9341 -1.9051 1.5700 46 1 5.8673 -0.4354 2.5718 47 1 5.8534 -2.0395 3.3430 48 1 3.8970 -3.4017 3.2590 49 1 3.9098 -3.3643 1.4787 50 1 1.6539 -2.3882 3.2899 51 1 1.6370 -3.8581 2.2849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932572350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:52 Heat of formation + Delta-G solvation = -43.707393 kcal Electronic energy + Delta-G solvation = -30243.305224 eV Core-core repulsion = 26142.563149 eV Total energy + Delta-G solvation = -4100.742075 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.81352 -40.00064 -38.34227 -36.47658 -35.64671 -34.69334 -33.05013 -31.94923 -30.50100 -30.22521 -29.74247 -29.08849 -26.50829 -25.06744 -24.54196 -23.42938 -22.34656 -21.85330 -21.20490 -20.49068 -20.11920 -18.58564 -17.52956 -16.87546 -16.65151 -16.25896 -15.83490 -15.59741 -15.40255 -15.32390 -14.91788 -14.83997 -14.48203 -14.24914 -14.15856 -13.85610 -13.52124 -13.08704 -12.99247 -12.82727 -12.76159 -12.55421 -12.43599 -12.32713 -12.00105 -11.96927 -11.79311 -11.36929 -11.26901 -11.23136 -11.03608 -10.78041 -10.60013 -10.35388 -10.14780 -10.11410 -9.86795 -9.43333 -9.28652 -9.20267 -8.92932 -8.38577 -8.22421 -7.28941 -6.00010 -4.03948 2.00864 2.13109 2.57197 3.14209 3.24844 3.28723 3.33848 3.37926 3.41155 4.09259 4.22044 4.36335 4.42080 4.42705 4.58635 4.62578 4.71196 4.78233 4.95432 4.98716 5.06544 5.09667 5.16097 5.24070 5.31565 5.33641 5.38936 5.44588 5.47260 5.51260 5.62588 5.71706 5.99487 6.06840 6.10710 6.15428 6.26237 6.31396 6.36752 6.37389 6.61132 6.66520 6.72527 7.00173 7.11870 7.23132 7.27320 7.56519 7.78342 7.91870 7.93946 7.95765 8.36875 8.55928 9.01138 9.59295 11.09453 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.001927 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.286371 B =14523.279030 C =15359.391985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.173 3.827 3 H 0.103 0.897 4 N -0.737 5.737 5 C 0.702 3.298 6 O -0.572 6.572 7 N -0.682 5.682 8 C 0.125 3.875 9 C -0.147 4.147 10 C -0.107 4.107 11 C -0.046 4.046 12 C 0.048 3.952 13 C -0.510 4.510 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.107 4.107 22 C -0.117 4.117 23 C 0.088 3.912 24 H 0.083 0.917 25 C 0.023 3.977 26 N -0.542 5.542 27 C 0.024 3.976 28 C 0.015 3.985 29 C 0.065 3.935 30 O -0.377 6.377 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.400 0.600 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.028 0.972 39 H 0.029 0.971 40 H 0.262 0.738 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.028 0.972 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.043 0.957 50 H 0.060 0.940 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.826 -14.690 29.063 32.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 H 0.121 0.879 4 N -0.394 5.394 5 C 0.402 3.598 6 O -0.448 6.448 7 N -0.329 5.329 8 C 0.032 3.968 9 C -0.167 4.167 10 C -0.126 4.126 11 C -0.046 4.046 12 C 0.011 3.989 13 C -0.548 4.548 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.126 4.126 22 C -0.137 4.137 23 C 0.029 3.971 24 H 0.101 0.899 25 C -0.106 4.106 26 N -0.267 5.267 27 C -0.124 4.124 28 C -0.114 4.114 29 C -0.012 4.012 30 O -0.295 6.295 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.233 0.767 35 H 0.234 0.766 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.047 0.953 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.104 0.896 49 H 0.061 0.939 50 H 0.079 0.921 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.392 -13.334 29.203 32.552 hybrid contribution 1.766 -1.456 -0.794 2.423 sum -3.626 -14.790 28.408 32.232 Atomic orbital electron populations 1.22121 0.94406 1.02823 1.02597 1.20846 0.94917 0.96372 0.81137 0.87930 1.45115 1.71866 1.13880 1.08529 1.15933 0.78257 0.85308 0.80267 1.90957 1.55689 1.14134 1.84021 1.42490 1.69355 1.11180 1.09873 1.17284 1.02621 0.92998 0.83897 1.20697 1.04771 1.00018 0.91239 1.20857 1.00181 0.94443 0.97109 1.20689 0.92848 0.94180 0.96910 1.18338 0.97123 0.94837 0.88557 1.21034 0.95621 1.29434 1.08758 0.92550 1.25023 0.97719 0.95195 0.96495 1.69955 1.35483 1.31360 1.16535 0.86601 0.84950 0.78236 0.77898 1.20223 1.21275 1.20212 1.20988 1.00101 1.00076 0.91408 1.20994 1.00122 0.93585 0.99023 1.22517 0.92312 0.83967 0.98301 0.89917 1.22816 0.95779 0.99935 0.92035 1.62209 1.10270 1.12954 1.41284 1.22391 0.86446 1.02767 1.00817 1.22838 0.96768 0.89893 1.01867 1.22660 0.92330 0.96463 0.89762 1.87987 1.72628 1.22644 1.46287 0.91763 0.91623 0.91654 0.76748 0.76574 0.86942 0.86077 0.95351 0.95319 0.92832 0.86172 0.85781 0.93394 0.89310 0.95311 0.90941 0.91122 0.89582 0.93851 0.92127 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.34 37.16 0.35 -1.08 16 2 C 0.17 1.52 2.42 -67.94 -0.16 1.36 16 3 H 0.10 1.02 7.58 -51.93 -0.39 0.63 16 4 N -0.74 -7.08 4.31 -58.68 -0.25 -7.34 16 5 C 0.70 9.54 8.27 -86.92 -0.72 8.82 16 6 O -0.57 -10.06 13.68 5.29 0.07 -9.99 16 7 N -0.68 -8.91 5.35 -14.22 -0.08 -8.98 16 8 C 0.12 2.11 6.28 -83.69 -0.53 1.59 16 9 C -0.15 -2.46 9.96 -39.40 -0.39 -2.85 16 10 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 11 C -0.05 -1.02 5.07 -104.59 -0.53 -1.55 16 12 C 0.05 1.27 5.10 -29.04 -0.15 1.12 16 13 C -0.51 -14.43 9.09 -34.44 -0.31 -14.75 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.63 5.46 -17.81 -0.10 1.53 16 16 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 17 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 C -0.11 -2.24 9.69 -39.61 -0.38 -2.62 16 22 C -0.12 -2.22 8.66 -39.39 -0.34 -2.56 16 23 C 0.09 0.63 2.55 -26.68 -0.07 0.56 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 C 0.02 0.16 4.84 -3.71 -0.02 0.15 16 26 N -0.54 -3.69 4.98 -242.59 -1.21 -4.89 16 27 C 0.02 0.14 9.61 60.07 0.58 0.72 16 28 C 0.01 0.08 5.66 -3.71 -0.02 0.06 16 29 C 0.06 0.35 7.01 37.21 0.26 0.61 16 30 O -0.38 -2.75 9.31 -35.23 -0.33 -3.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.58 7.69 -51.93 -0.40 0.18 16 34 H 0.40 3.12 8.01 -40.82 -0.33 2.79 16 35 H 0.40 3.81 8.83 -40.82 -0.36 3.45 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.12 2.29 8.06 -52.48 -0.42 1.86 16 38 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 42 H 0.12 2.34 6.41 -52.49 -0.34 2.01 16 43 H 0.05 0.39 7.36 -51.93 -0.38 0.01 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 46 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 48 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 51 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 412.29 15.07 6.21 6.21 Total: -1.00 -33.27 412.29 -11.28 -44.55 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.50 Total: 4.18 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.92 Total: -11.41 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.80 Total: -47.16 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.26 Total: -13.06 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.27 -11.28 -44.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932572350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.842 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds