Wall clock time and date at job start Wed Apr 1 2020 04:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47073 * 2 1 4 4 N 1.46490 * 109.47174 * 240.00213 * 2 1 3 5 5 C 1.34782 * 120.00274 * 84.99964 * 4 2 1 6 6 O 1.21583 * 119.99782 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99907 * 179.97438 * 5 4 2 8 8 C 1.39950 * 119.99559 * 185.10612 * 7 5 4 9 9 C 1.38864 * 120.07006 * 213.07652 * 8 7 5 10 10 C 1.38109 * 119.92790 * 179.77752 * 9 8 7 11 11 C 1.38278 * 120.07239 * 0.50114 * 10 9 8 12 12 C 1.50698 * 119.93265 * 179.76903 * 11 10 9 13 13 C 1.50698 * 109.47258 * 269.98051 * 12 11 10 14 14 H 1.07993 * 120.00175 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00064 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99654 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00289 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47057 * 60.00354 * 17 15 13 19 19 H 1.48500 * 109.47494 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47234 * 300.00593 * 17 15 13 21 21 C 1.38287 * 120.13882 * 359.75400 * 11 10 9 22 22 C 1.38117 * 120.06838 * 359.97438 * 21 11 10 23 23 C 1.52999 * 109.46849 * 120.00121 * 2 1 3 24 24 H 1.09003 * 109.50912 * 299.99473 * 23 2 1 25 25 C 1.53099 * 109.50423 * 179.91585 * 23 2 1 26 26 N 1.47020 * 109.25395 * 183.26149 * 25 23 2 27 27 C 1.46905 * 110.99607 * 182.34955 * 26 25 23 28 28 C 1.47011 * 110.79235 * 58.54891 * 26 25 23 29 29 C 1.53102 * 109.25459 * 301.40691 * 28 26 25 30 30 O 1.43014 * 109.50909 * 60.08542 * 23 2 1 31 31 H 1.09001 * 109.47419 * 300.00117 * 1 2 3 32 32 H 1.09004 * 109.47482 * 59.99607 * 1 2 3 33 33 H 1.08995 * 109.47736 * 179.97438 * 1 2 3 34 34 H 0.97008 * 120.00157 * 265.00149 * 4 2 1 35 35 H 0.96993 * 120.00366 * 5.38963 * 7 5 4 36 36 H 1.08002 * 120.03318 * 0.02562 * 9 8 7 37 37 H 1.08008 * 119.96807 * 180.25630 * 10 9 8 38 38 H 1.09003 * 109.46952 * 29.98359 * 12 11 10 39 39 H 1.09007 * 109.47016 * 149.98183 * 12 11 10 40 40 H 0.97000 * 119.99531 * 179.97438 * 16 15 13 41 41 H 1.07997 * 119.96618 * 179.97438 * 21 11 10 42 42 H 1.07994 * 120.03176 * 180.02562 * 22 21 11 43 43 H 1.09000 * 109.50717 * 303.14820 * 25 23 2 44 44 H 1.09000 * 109.51080 * 63.27949 * 25 23 2 45 45 H 1.09003 * 109.46944 * 300.26964 * 27 26 25 46 46 H 1.08994 * 109.47299 * 60.26871 * 27 26 25 47 47 H 1.08995 * 109.46949 * 180.27754 * 27 26 25 48 48 H 1.08995 * 109.51000 * 181.47229 * 28 26 25 49 49 H 1.09006 * 109.50695 * 61.33642 * 28 26 25 50 50 H 1.08997 * 109.50913 * 296.91441 * 29 28 26 51 51 H 1.08999 * 109.50440 * 176.78074 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 2.1470 -0.0182 -2.3571 6 8 1.8574 1.1614 -2.4118 7 7 2.5968 -0.6534 -3.4574 8 6 2.8321 0.0668 -4.6340 9 6 2.6212 -0.5308 -5.8696 10 6 2.8499 0.1842 -7.0289 11 6 3.2985 1.4904 -6.9603 12 6 3.5521 2.2659 -8.2273 13 6 4.9807 2.0639 -8.6625 14 1 5.6390 1.4364 -8.0802 15 6 5.4470 2.6795 -9.8048 16 7 4.6451 3.4433 -10.5142 17 14 7.2175 2.4286 -10.3447 18 1 7.4600 0.9844 -10.5910 19 1 7.4674 3.1929 -11.5931 20 1 8.1329 2.9094 -9.2788 21 6 3.5147 2.0866 -5.7314 22 6 3.2824 1.3788 -4.5684 23 6 2.0399 -0.7213 1.2492 24 1 1.6770 -0.2079 2.1397 25 6 3.5709 -0.7236 1.2490 26 7 4.0547 -1.4850 2.4099 27 6 5.5221 -1.4649 2.4781 28 6 3.5477 -2.8646 2.3772 29 6 2.0170 -2.8398 2.3667 30 8 1.5653 -2.0704 1.2490 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 2.7534 -1.6103 -3.4350 36 1 2.2747 -1.5523 -5.9239 37 1 2.6821 -0.2786 -7.9902 38 1 2.8805 1.9130 -9.0099 39 1 3.3739 3.3259 -8.0463 40 1 4.9732 3.8766 -11.3176 41 1 3.8655 3.1068 -5.6811 42 1 3.4510 1.8452 -3.6090 43 1 3.9340 -1.1887 0.3325 44 1 3.9365 0.3016 1.3072 45 1 5.9341 -1.9051 1.5700 46 1 5.8673 -0.4354 2.5718 47 1 5.8534 -2.0395 3.3430 48 1 3.8970 -3.4017 3.2590 49 1 3.9098 -3.3643 1.4787 50 1 1.6539 -2.3882 3.2899 51 1 1.6370 -3.8581 2.2849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932572350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:50 Heat of formation + Delta-G solvation = -66.365911 kcal Electronic energy + Delta-G solvation = -30244.287771 eV Core-core repulsion = 26142.563149 eV Total energy + Delta-G solvation = -4101.724622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.80092 -40.78607 -39.69440 -37.19905 -36.44699 -35.99722 -34.98440 -32.99182 -31.81510 -31.71568 -30.66105 -29.60473 -28.29234 -25.73663 -25.15628 -24.99400 -23.85038 -22.98366 -22.00012 -21.61130 -21.17389 -19.65743 -18.63835 -18.47187 -17.60375 -17.28833 -16.81966 -16.59796 -16.37902 -16.13876 -15.90034 -15.89238 -15.72984 -15.45181 -15.11075 -14.76195 -14.59647 -14.51309 -14.25177 -14.17199 -13.81464 -13.58316 -13.32660 -13.25190 -13.14882 -13.04748 -12.83175 -12.59181 -12.58025 -12.45888 -12.34108 -12.04308 -11.88616 -11.68863 -11.58604 -11.52821 -11.25748 -10.90408 -10.65282 -10.58523 -10.17076 -9.74259 -9.44616 -8.80518 -8.16429 -6.31446 0.51005 0.59716 1.40164 1.43381 1.51522 1.55094 2.07295 2.41311 2.65763 2.77464 3.04436 3.12129 3.17699 3.61876 3.80162 3.98417 4.06347 4.08818 4.17429 4.19833 4.28193 4.35780 4.40457 4.43443 4.53742 4.61517 4.62173 4.62997 4.67337 4.72704 4.76543 4.78825 4.89439 4.95079 4.96183 5.00196 5.14180 5.31089 5.32949 5.34792 5.43673 5.47340 5.52115 5.64509 5.77385 5.85977 5.91845 5.96738 6.10903 6.14724 6.15095 6.28250 6.80975 6.98036 7.36597 7.49319 8.91036 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.001927 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.286371 B =14523.279030 C =15359.391985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.172 3.828 3 H 0.090 0.910 4 N -0.717 5.717 5 C 0.700 3.300 6 O -0.613 6.613 7 N -0.670 5.670 8 C 0.141 3.859 9 C -0.131 4.131 10 C -0.112 4.112 11 C -0.078 4.078 12 C 0.058 3.942 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.270 1.270 21 C -0.119 4.119 22 C -0.123 4.123 23 C 0.099 3.901 24 H 0.091 0.909 25 C 0.025 3.975 26 N -0.550 5.550 27 C 0.023 3.977 28 C 0.014 3.986 29 C 0.063 3.937 30 O -0.387 6.387 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.411 0.589 35 H 0.422 0.578 36 H 0.157 0.843 37 H 0.126 0.874 38 H 0.006 0.994 39 H -0.002 1.002 40 H 0.265 0.735 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.039 0.961 44 H 0.083 0.917 45 H 0.024 0.976 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.100 0.900 49 H 0.039 0.961 50 H 0.064 0.936 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 -17.715 31.204 36.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.066 3.934 3 H 0.108 0.892 4 N -0.373 5.373 5 C 0.401 3.599 6 O -0.492 6.492 7 N -0.318 5.318 8 C 0.047 3.953 9 C -0.151 4.151 10 C -0.130 4.130 11 C -0.079 4.079 12 C 0.021 3.979 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.206 1.206 20 H -0.195 1.195 21 C -0.138 4.138 22 C -0.143 4.143 23 C 0.041 3.959 24 H 0.109 0.891 25 C -0.104 4.104 26 N -0.275 5.275 27 C -0.124 4.124 28 C -0.114 4.114 29 C -0.014 4.014 30 O -0.306 6.306 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.247 0.753 35 H 0.260 0.740 36 H 0.175 0.825 37 H 0.144 0.856 38 H 0.025 0.975 39 H 0.017 0.983 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.057 0.943 44 H 0.102 0.898 45 H 0.042 0.958 46 H 0.089 0.911 47 H 0.101 0.899 48 H 0.118 0.882 49 H 0.057 0.943 50 H 0.082 0.918 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.878 -16.431 31.397 35.771 hybrid contribution 1.529 -0.573 -1.299 2.087 sum -3.349 -17.004 30.098 34.731 Atomic orbital electron populations 1.22047 0.94161 1.02854 1.02169 1.20912 0.95024 0.96058 0.81387 0.89229 1.44962 1.70552 1.14295 1.07467 1.16075 0.77958 0.84859 0.81008 1.90945 1.57425 1.16152 1.84694 1.42292 1.68913 1.12047 1.08577 1.17334 1.00262 0.92296 0.85456 1.20979 1.02916 1.01541 0.89696 1.20953 0.99895 0.93469 0.98708 1.20389 0.96456 0.95574 0.95455 1.18082 0.96108 0.93627 0.90126 1.21355 0.96610 1.29447 1.09043 0.92616 1.25970 1.02494 0.94704 0.96484 1.70089 1.37702 1.32263 1.17033 0.85473 0.79125 0.78714 0.77581 1.18979 1.20627 1.19465 1.20905 1.01010 0.99997 0.91841 1.20988 1.00591 0.94728 0.98009 1.22329 0.92068 0.84186 0.97341 0.89131 1.22755 0.95847 0.99758 0.92022 1.62237 1.10746 1.13736 1.40752 1.22418 0.86021 1.02879 1.01124 1.22901 0.96915 0.89197 1.02339 1.22827 0.92185 0.97122 0.89242 1.87965 1.72817 1.22491 1.47280 0.90094 0.94173 0.91268 0.75262 0.74031 0.82512 0.85598 0.97534 0.98324 0.92614 0.87279 0.85865 0.94268 0.89848 0.95766 0.91141 0.89912 0.88151 0.94299 0.91803 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.34 71.98 0.67 -1.84 16 2 C 0.17 2.79 2.42 44.99 0.11 2.90 16 3 H 0.09 1.75 7.58 -2.39 -0.02 1.73 16 4 N -0.72 -12.44 4.31 -457.84 -1.97 -14.42 16 5 C 0.70 17.96 8.27 179.05 1.48 19.44 16 6 O -0.61 -21.37 13.68 -3.98 -0.05 -21.43 16 7 N -0.67 -15.73 5.35 -317.18 -1.70 -17.43 16 8 C 0.14 4.51 6.28 38.14 0.24 4.75 16 9 C -0.13 -4.06 9.96 22.39 0.22 -3.83 16 10 C -0.11 -4.35 9.69 22.25 0.22 -4.14 16 11 C -0.08 -3.62 5.07 -19.84 -0.10 -3.72 16 12 C 0.06 3.20 5.10 29.10 0.15 3.34 16 13 C -0.53 -30.73 9.09 25.60 0.23 -30.50 16 14 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 17 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 C -0.12 -5.17 9.69 22.25 0.22 -4.95 16 22 C -0.12 -4.67 8.66 22.39 0.19 -4.48 16 23 C 0.10 1.23 2.55 30.63 0.08 1.31 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 25 C 0.02 0.32 4.84 86.31 0.42 0.74 16 26 N -0.55 -6.41 4.98 -921.41 -4.59 -11.00 16 27 C 0.02 0.24 9.61 127.69 1.23 1.47 16 28 C 0.01 0.12 5.66 86.32 0.49 0.61 16 29 C 0.06 0.49 7.01 72.02 0.50 1.00 16 30 O -0.39 -4.62 9.31 -148.98 -1.39 -6.00 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.07 1.08 7.69 -2.39 -0.02 1.06 16 34 H 0.41 5.32 8.01 -92.70 -0.74 4.57 16 35 H 0.42 6.41 8.83 -92.71 -0.82 5.59 16 36 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 37 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 38 H 0.01 0.37 8.08 -2.39 -0.02 0.35 16 39 H 0.00 -0.09 8.08 -2.38 -0.02 -0.11 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.12 4.71 6.41 -2.91 -0.02 4.69 16 43 H 0.04 0.57 7.36 -2.39 -0.02 0.56 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.02 0.26 8.14 -2.39 -0.02 0.25 16 46 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.08 0.63 8.13 -2.39 -0.02 0.61 16 48 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.04 0.38 8.14 -2.38 -0.02 0.36 16 50 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.12 0.50 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -74.33 412.29 -1.21 -75.54 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.63 Total: 22.07 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 6.81 Total: -17.35 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -7.98 Total: -99.76 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.44 Total: -27.43 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -74.33 -1.21 -75.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932572350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.173 kcal (2) G-P(sol) polarization free energy of solvation -74.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds