Wall clock time and date at job start Wed Apr 1 2020 04:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46621 * 2 1 4 4 N 1.46497 * 109.47170 * 119.99506 * 2 1 3 5 5 C 1.34774 * 120.00251 * 275.00199 * 4 2 1 6 6 O 1.21579 * 119.99849 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99820 * 179.97438 * 5 4 2 8 8 C 1.39945 * 119.99798 * 174.68511 * 7 5 4 9 9 C 1.38867 * 120.07370 * 326.57393 * 8 7 5 10 10 C 1.38110 * 119.93135 * 179.76553 * 9 8 7 11 11 C 1.38279 * 120.06872 * 0.50844 * 10 9 8 12 12 C 1.50703 * 119.93351 * 179.76674 * 11 10 9 13 13 C 1.50699 * 109.47230 * 269.97894 * 12 11 10 14 14 H 1.08009 * 119.99668 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00423 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99714 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00388 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47269 * 90.00031 * 17 15 13 19 19 H 1.48504 * 109.47159 * 210.00026 * 17 15 13 20 20 H 1.48500 * 109.47037 * 330.00083 * 17 15 13 21 21 C 1.38283 * 120.14218 * 359.74189 * 11 10 9 22 22 C 1.38120 * 120.06812 * 0.02562 * 21 11 10 23 23 C 1.52995 * 109.47397 * 240.00066 * 2 1 3 24 24 H 1.08993 * 109.50931 * 185.08483 * 23 2 1 25 25 C 1.53101 * 109.50839 * 64.99480 * 23 2 1 26 26 N 1.47007 * 109.26139 * 183.21949 * 25 23 2 27 27 C 1.46901 * 111.00275 * 182.39877 * 26 25 23 28 28 C 1.47008 * 110.75509 * 58.61686 * 26 25 23 29 29 C 1.53106 * 109.25760 * 301.38686 * 28 26 25 30 30 O 1.43013 * 109.25673 * 56.84500 * 29 28 26 31 31 H 1.09000 * 109.46862 * 299.99745 * 1 2 3 32 32 H 1.08997 * 109.47126 * 60.00223 * 1 2 3 33 33 H 1.09000 * 109.46621 * 180.02562 * 1 2 3 34 34 H 0.97004 * 119.99911 * 95.00143 * 4 2 1 35 35 H 0.96996 * 120.00101 * 354.69917 * 7 5 4 36 36 H 1.07996 * 120.03172 * 359.97438 * 9 8 7 37 37 H 1.07995 * 119.97024 * 180.25176 * 10 9 8 38 38 H 1.08999 * 109.46467 * 29.97465 * 12 11 10 39 39 H 1.09000 * 109.47308 * 149.97471 * 12 11 10 40 40 H 0.96998 * 120.00057 * 179.97438 * 16 15 13 41 41 H 1.08006 * 119.96900 * 179.97438 * 21 11 10 42 42 H 1.07996 * 120.03369 * 180.02562 * 22 21 11 43 43 H 1.09007 * 109.50715 * 303.15514 * 25 23 2 44 44 H 1.09008 * 109.50289 * 63.28010 * 25 23 2 45 45 H 1.08991 * 109.47479 * 59.99297 * 27 26 25 46 46 H 1.08997 * 109.46972 * 180.02562 * 27 26 25 47 47 H 1.09009 * 109.46616 * 299.99339 * 27 26 25 48 48 H 1.08997 * 109.50938 * 61.31938 * 28 26 25 49 49 H 1.09002 * 109.51107 * 181.45406 * 28 26 25 50 50 H 1.08994 * 109.50722 * 176.78516 * 29 28 26 51 51 H 1.08998 * 109.50129 * 296.91355 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8575 1.1614 2.4118 7 7 2.5959 -0.6536 3.4577 8 6 2.8354 0.0673 4.6331 9 6 3.2922 1.3769 4.5654 10 6 3.5230 2.0872 5.7271 11 6 3.3097 1.4921 6.9570 12 6 3.5676 2.2682 8.2228 13 6 4.9970 2.0647 8.6545 14 1 5.6532 1.4364 8.0704 15 6 5.4673 2.6812 9.7944 16 7 4.6683 3.4466 10.5054 17 14 7.2389 2.4283 10.3299 18 1 8.0966 3.4710 9.7115 19 1 7.3279 2.5274 11.8090 20 1 7.7006 1.0856 9.8951 21 6 2.8598 0.1864 7.0279 22 6 2.6226 -0.5277 5.8697 23 6 2.0401 -0.7212 -1.2492 24 1 3.1262 -0.8011 -1.2054 25 6 1.6354 0.0688 -2.4967 26 7 2.0605 -0.6675 -3.6960 27 6 1.7410 0.0849 -4.9165 28 6 1.4532 -2.0060 -3.7280 29 6 1.8597 -2.7752 -2.4682 30 8 1.4664 -2.0297 -1.3129 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 2.2491 -1.6317 1.1527 35 1 2.7530 -1.6105 3.4351 36 1 3.4635 1.8406 3.6052 37 1 3.8743 3.1071 5.6751 38 1 3.3903 3.3283 8.0413 39 1 2.8975 1.9168 9.0073 40 1 4.9991 3.8801 11.3076 41 1 2.6946 -0.2758 7.9900 42 1 2.2709 -1.5472 5.9257 43 1 0.5529 0.1955 -2.5120 44 1 2.1168 1.0467 -2.4802 45 1 2.2549 1.0458 -4.8959 46 1 2.0657 -0.4826 -5.7886 47 1 0.6648 0.2495 -4.9706 48 1 0.3679 -1.9125 -3.7630 49 1 1.8016 -2.5427 -4.6104 50 1 1.3660 -3.7469 -2.4599 51 1 2.9406 -2.9154 -2.4603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932572352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:54 Heat of formation + Delta-G solvation = -66.621651 kcal Electronic energy + Delta-G solvation = -29860.913724 eV Core-core repulsion = 25759.178012 eV Total energy + Delta-G solvation = -4101.735712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76602 -40.81468 -39.71068 -37.20551 -36.43101 -35.98786 -34.98228 -33.22271 -31.88952 -31.72423 -30.44061 -29.26548 -28.29141 -26.11125 -25.16093 -25.02366 -23.83214 -23.02365 -21.96646 -21.55035 -21.10280 -19.57373 -18.63406 -18.46510 -17.54777 -17.20461 -16.86002 -16.66309 -16.56575 -16.11235 -16.01262 -15.88238 -15.73287 -15.51214 -14.95863 -14.78361 -14.57877 -14.51425 -14.24139 -14.06451 -13.93786 -13.62247 -13.36111 -13.25786 -13.14428 -12.95811 -12.82513 -12.60524 -12.56262 -12.43193 -12.29536 -12.02850 -11.88698 -11.67434 -11.57730 -11.52142 -11.25393 -10.89496 -10.66353 -10.58323 -10.18118 -9.72889 -9.42334 -8.79611 -8.15784 -6.30826 0.52113 0.61002 1.41120 1.42522 1.53105 1.54057 2.07339 2.42114 2.65146 2.80123 3.05697 3.12996 3.18679 3.68399 3.82247 3.98237 4.00818 4.08196 4.14366 4.18882 4.25964 4.34654 4.40331 4.41710 4.56831 4.60990 4.62783 4.63617 4.68731 4.71609 4.76358 4.78566 4.86222 4.95230 4.98482 5.00499 5.15405 5.31384 5.32661 5.35832 5.44706 5.45967 5.53241 5.65629 5.78336 5.87883 5.93246 5.98434 6.12021 6.14401 6.15833 6.29392 6.81908 7.00017 7.37502 7.49890 8.91871 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025942 B = 0.001657 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.072708 B =16890.886192 C =17021.190740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.172 3.828 3 H 0.089 0.911 4 N -0.718 5.718 5 C 0.701 3.299 6 O -0.614 6.614 7 N -0.668 5.668 8 C 0.141 3.859 9 C -0.123 4.123 10 C -0.119 4.119 11 C -0.078 4.078 12 C 0.057 3.943 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.111 4.111 22 C -0.131 4.131 23 C 0.098 3.902 24 H 0.074 0.926 25 C 0.025 3.975 26 N -0.553 5.553 27 C 0.024 3.976 28 C 0.015 3.985 29 C 0.061 3.939 30 O -0.386 6.386 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.414 0.586 35 H 0.423 0.577 36 H 0.123 0.877 37 H 0.109 0.891 38 H -0.002 1.002 39 H 0.007 0.993 40 H 0.265 0.735 41 H 0.126 0.874 42 H 0.158 0.842 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.028 0.972 48 H 0.040 0.960 49 H 0.100 0.900 50 H 0.118 0.882 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.403 -16.391 -33.172 37.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.067 3.933 3 H 0.107 0.893 4 N -0.374 5.374 5 C 0.401 3.599 6 O -0.493 6.493 7 N -0.317 5.317 8 C 0.046 3.954 9 C -0.144 4.144 10 C -0.138 4.138 11 C -0.079 4.079 12 C 0.020 3.980 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.199 1.199 19 H -0.204 1.204 20 H -0.188 1.188 21 C -0.130 4.130 22 C -0.151 4.151 23 C 0.040 3.960 24 H 0.092 0.908 25 C -0.104 4.104 26 N -0.278 5.278 27 C -0.124 4.124 28 C -0.113 4.113 29 C -0.016 4.016 30 O -0.306 6.306 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.251 0.749 35 H 0.261 0.739 36 H 0.141 0.859 37 H 0.127 0.873 38 H 0.017 0.983 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.144 0.856 42 H 0.176 0.824 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.047 0.953 48 H 0.058 0.942 49 H 0.118 0.882 50 H 0.136 0.864 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.295 -15.393 -32.920 37.066 hybrid contribution 0.173 -0.041 0.423 0.459 sum -7.122 -15.434 -32.496 36.674 Atomic orbital electron populations 1.22074 0.94590 1.02707 1.01810 1.20802 0.94881 0.96079 0.81559 0.89278 1.44918 1.70624 1.14461 1.07408 1.16067 0.77950 0.84836 0.81025 1.90942 1.57453 1.16201 1.84729 1.42274 1.68810 1.12096 1.08537 1.17336 1.00206 0.92341 0.85497 1.20992 1.00570 0.94773 0.98024 1.20899 1.01041 0.99985 0.91839 1.20392 0.96479 0.95590 0.95445 1.18087 0.96108 0.93628 0.90155 1.21403 0.96592 1.29346 1.09154 0.92574 1.25950 1.02466 0.94679 0.96434 1.70093 1.37650 1.32279 1.17096 0.85420 0.79128 0.78971 0.77373 1.19940 1.20439 1.18779 1.20957 0.99861 0.93462 0.98732 1.20990 1.02842 1.01593 0.89659 1.22218 0.97626 0.83492 0.92701 0.90847 1.22769 0.99723 0.98112 0.89781 1.62197 1.59236 1.03605 1.02801 1.22426 0.99235 0.99084 0.91629 1.22877 0.97596 0.90317 1.00476 1.22832 1.00634 0.94914 0.83180 1.87975 1.71554 1.26509 1.44513 0.94193 0.90565 0.91351 0.74948 0.73851 0.85885 0.87271 0.98323 0.97507 0.92631 0.85577 0.82439 0.93175 0.89009 0.90822 0.90107 0.95307 0.94200 0.88153 0.86438 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.04 71.98 0.65 -1.95 16 2 C 0.17 2.88 2.45 44.99 0.11 2.99 16 3 H 0.09 1.78 7.58 -2.39 -0.02 1.76 16 4 N -0.72 -12.64 5.06 -457.83 -2.32 -14.96 16 5 C 0.70 18.16 8.26 179.05 1.48 19.64 16 6 O -0.61 -21.61 13.70 -3.96 -0.05 -21.66 16 7 N -0.67 -15.72 5.35 -317.18 -1.70 -17.42 16 8 C 0.14 4.52 6.28 38.15 0.24 4.76 16 9 C -0.12 -4.71 8.65 22.39 0.19 -4.51 16 10 C -0.12 -5.19 9.69 22.25 0.22 -4.97 16 11 C -0.08 -3.64 5.07 -19.84 -0.10 -3.74 16 12 C 0.06 3.18 5.10 29.10 0.15 3.33 16 13 C -0.53 -30.82 9.09 25.60 0.23 -30.59 16 14 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 15 C 0.00 0.15 5.46 84.65 0.46 0.61 16 16 N -0.93 -57.22 13.29 21.44 0.28 -56.94 16 17 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 21 C -0.11 -4.35 9.69 22.25 0.22 -4.14 16 22 C -0.13 -4.05 9.96 22.39 0.22 -3.82 16 23 C 0.10 1.26 2.63 30.63 0.08 1.34 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 C 0.02 0.29 4.77 86.32 0.41 0.70 16 26 N -0.55 -6.00 4.98 -921.43 -4.59 -10.59 16 27 C 0.02 0.19 9.60 127.69 1.23 1.42 16 28 C 0.02 0.13 5.66 86.32 0.49 0.62 16 29 C 0.06 0.50 7.01 72.02 0.50 1.01 16 30 O -0.39 -4.79 9.33 -148.98 -1.39 -6.18 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.07 6.50 -2.39 -0.02 1.05 16 33 H 0.07 1.13 7.56 -2.39 -0.02 1.11 16 34 H 0.41 5.09 8.41 -92.71 -0.78 4.31 16 35 H 0.42 6.32 8.83 -92.71 -0.82 5.50 16 36 H 0.12 4.72 6.43 -2.91 -0.02 4.70 16 37 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 16 39 H 0.01 0.39 8.08 -2.39 -0.02 0.37 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 42 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 43 H 0.05 0.60 6.43 -2.38 -0.02 0.59 16 44 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.03 0.23 8.14 -2.38 -0.02 0.21 16 48 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -75.15 410.55 -1.62 -76.77 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -0.66 Total: 21.29 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 6.78 Total: -17.31 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -8.32 Total: -99.91 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -1.44 Total: -27.85 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.15 -1.62 -76.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932572352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.146 kcal (2) G-P(sol) polarization free energy of solvation -75.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds