Wall clock time and date at job start Wed Apr 1 2020 04:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46881 * 2 1 4 4 N 1.46494 * 109.47359 * 120.00567 * 2 1 3 5 5 C 1.34776 * 120.00178 * 274.99874 * 4 2 1 6 6 O 1.21588 * 119.99444 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00587 * 180.02562 * 5 4 2 8 8 C 1.39938 * 120.00269 * 184.63260 * 7 5 4 9 9 C 1.38866 * 120.06704 * 324.64263 * 8 7 5 10 10 C 1.38119 * 119.92666 * 180.30144 * 9 8 7 11 11 C 1.38275 * 120.07182 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.92881 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.46902 * 269.97995 * 12 11 10 14 14 H 1.08000 * 120.00288 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99980 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99919 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00137 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47351 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47695 * 119.99384 * 17 15 13 20 20 H 1.48504 * 109.47298 * 239.99359 * 17 15 13 21 21 C 1.38282 * 120.14008 * 0.02562 * 11 10 9 22 22 C 1.38112 * 120.07043 * 0.02562 * 21 11 10 23 23 C 1.53007 * 109.46600 * 240.00418 * 2 1 3 24 24 H 1.08994 * 109.50670 * 64.99931 * 23 2 1 25 25 C 1.53100 * 109.50199 * 185.08530 * 23 2 1 26 26 N 1.47013 * 109.25461 * 176.78302 * 25 23 2 27 27 C 1.46906 * 111.00118 * 177.60884 * 26 25 23 28 28 C 1.47014 * 110.75818 * 301.38461 * 26 25 23 29 29 C 1.53101 * 109.25634 * 58.61447 * 28 26 25 30 30 O 1.43013 * 109.50800 * 304.90939 * 23 2 1 31 31 H 1.08997 * 109.47139 * 59.99365 * 1 2 3 32 32 H 1.08999 * 109.46881 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46527 * 299.99170 * 1 2 3 34 34 H 0.97005 * 119.99986 * 94.99664 * 4 2 1 35 35 H 0.97003 * 119.99543 * 4.62079 * 7 5 4 36 36 H 1.08000 * 120.03726 * 0.25553 * 9 8 7 37 37 H 1.08001 * 119.96139 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47401 * 29.97941 * 12 11 10 39 39 H 1.08995 * 109.46973 * 149.98498 * 12 11 10 40 40 H 0.96997 * 120.00295 * 180.02562 * 16 15 13 41 41 H 1.08004 * 119.96610 * 179.97438 * 21 11 10 42 42 H 1.07997 * 120.03226 * 179.97438 * 22 21 11 43 43 H 1.09001 * 109.50728 * 296.71640 * 25 23 2 44 44 H 1.08994 * 109.51038 * 56.80973 * 25 23 2 45 45 H 1.09000 * 109.46694 * 59.99732 * 27 26 25 46 46 H 1.08998 * 109.47304 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.46489 * 300.00081 * 27 26 25 48 48 H 1.08991 * 109.51169 * 178.55227 * 28 26 25 49 49 H 1.09003 * 109.50498 * 298.64005 * 28 26 25 50 50 H 1.08998 * 109.50725 * 63.09075 * 29 28 26 51 51 H 1.08996 * 109.50977 * 183.17977 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1472 -0.0185 2.3571 6 8 1.8584 1.1613 2.4116 7 7 2.5970 -0.6537 3.4574 8 6 2.6391 0.0173 4.6847 9 6 2.9456 1.3710 4.7273 10 6 2.9925 2.0290 5.9408 11 6 2.7341 1.3413 7.1123 12 6 2.7855 2.0626 8.4345 13 6 4.1827 1.9863 8.9943 14 1 4.9559 1.4671 8.4475 15 6 4.4736 2.5784 10.2049 16 7 3.5319 3.2103 10.8710 17 14 6.2055 2.4845 10.8984 18 1 7.0727 1.7241 9.9630 19 1 6.7455 3.8572 11.0695 20 1 6.1752 1.7970 12.2144 21 6 2.4285 -0.0067 7.0731 22 6 2.3811 -0.6707 5.8630 23 6 2.0399 -0.7212 -1.2494 24 1 1.7518 -0.1587 -2.1374 25 6 3.5656 -0.8334 -1.1879 26 7 4.0430 -1.5942 -2.3517 27 6 5.5097 -1.6768 -2.3611 28 6 3.4398 -2.9346 -2.3812 29 6 1.9154 -2.8013 -2.4306 30 8 1.4717 -2.0323 -1.3093 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5137 0.8901 34 1 2.2491 -1.6319 1.1524 35 1 2.8914 -1.5761 3.3985 36 1 3.1479 1.9086 3.8127 37 1 3.2313 3.0817 5.9747 38 1 2.5086 3.1068 8.2898 39 1 2.0892 1.5951 9.1307 40 1 3.7366 3.6272 11.7226 41 1 2.2275 -0.5412 7.9899 42 1 2.1428 -1.7236 5.8332 43 1 4.0047 0.1641 -1.2001 44 1 3.8561 -1.3478 -0.2720 45 1 5.8513 -2.1749 -1.4538 46 1 5.8361 -2.2443 -3.2326 47 1 5.9298 -0.6719 -2.4042 48 1 3.7871 -3.4708 -3.2642 49 1 3.7289 -3.4836 -1.4849 50 1 1.6236 -2.2999 -3.3534 51 1 1.4620 -3.7919 -2.3956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932572354.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:57 Heat of formation + Delta-G solvation = -65.147743 kcal Electronic energy + Delta-G solvation = -30218.379942 eV Core-core repulsion = 26116.708144 eV Total energy + Delta-G solvation = -4101.671798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.80155 -40.78569 -39.68835 -37.19415 -36.45072 -36.00171 -34.98741 -32.97959 -31.81006 -31.69588 -30.65556 -29.61507 -28.29009 -25.73997 -25.15401 -24.98443 -23.81462 -22.98898 -22.04188 -21.63957 -21.13064 -19.66167 -18.62900 -18.48146 -17.55521 -17.29165 -16.82421 -16.60710 -16.37590 -16.14888 -15.92107 -15.89349 -15.71761 -15.47239 -15.09468 -14.77451 -14.60514 -14.52422 -14.24307 -14.13438 -13.79896 -13.58130 -13.32044 -13.26306 -13.12442 -13.04093 -12.83194 -12.63017 -12.55542 -12.44940 -12.35386 -12.04634 -11.87805 -11.67228 -11.56369 -11.52583 -11.21493 -10.85662 -10.64865 -10.59888 -10.17805 -9.73417 -9.43643 -8.82484 -8.17112 -6.31899 0.51368 0.60618 1.39883 1.40437 1.54053 1.54758 2.07962 2.40921 2.66726 2.78024 3.03382 3.11705 3.17536 3.62636 3.80121 3.98623 4.07454 4.09130 4.19254 4.20312 4.28143 4.35897 4.41054 4.43949 4.54288 4.62145 4.62821 4.63336 4.68663 4.73191 4.77670 4.78709 4.89318 4.95723 4.96855 5.00564 5.15692 5.32251 5.33916 5.35048 5.44447 5.48070 5.52842 5.65342 5.77515 5.86719 5.92337 5.95986 6.11144 6.14970 6.15738 6.28708 6.81033 6.98109 7.36355 7.49739 8.90872 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.001875 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.852581 B =14927.505203 C =15633.874005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.172 3.828 3 H 0.091 0.909 4 N -0.717 5.717 5 C 0.701 3.299 6 O -0.613 6.613 7 N -0.669 5.669 8 C 0.138 3.862 9 C -0.122 4.122 10 C -0.121 4.121 11 C -0.077 4.077 12 C 0.057 3.943 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.275 1.275 21 C -0.113 4.113 22 C -0.129 4.129 23 C 0.099 3.901 24 H 0.090 0.910 25 C 0.025 3.975 26 N -0.551 5.551 27 C 0.024 3.976 28 C 0.015 3.985 29 C 0.062 3.938 30 O -0.386 6.386 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.410 0.590 35 H 0.421 0.579 36 H 0.128 0.872 37 H 0.109 0.891 38 H -0.001 1.001 39 H 0.007 0.993 40 H 0.265 0.735 41 H 0.126 0.874 42 H 0.157 0.843 43 H 0.083 0.917 44 H 0.042 0.958 45 H 0.025 0.975 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.100 0.900 49 H 0.040 0.960 50 H 0.063 0.937 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 -17.223 -32.188 36.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.067 3.933 3 H 0.109 0.891 4 N -0.373 5.373 5 C 0.401 3.599 6 O -0.492 6.492 7 N -0.318 5.318 8 C 0.043 3.957 9 C -0.142 4.142 10 C -0.140 4.140 11 C -0.077 4.077 12 C 0.020 3.980 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.792 3.208 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.200 1.200 21 C -0.132 4.132 22 C -0.149 4.149 23 C 0.040 3.960 24 H 0.108 0.892 25 C -0.103 4.103 26 N -0.275 5.275 27 C -0.124 4.124 28 C -0.113 4.113 29 C -0.014 4.014 30 O -0.306 6.306 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.247 0.753 35 H 0.260 0.740 36 H 0.146 0.854 37 H 0.127 0.873 38 H 0.017 0.983 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.144 0.856 42 H 0.175 0.825 43 H 0.101 0.899 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.118 0.882 49 H 0.058 0.942 50 H 0.081 0.919 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.744 -15.929 -32.383 36.131 hybrid contribution 1.411 -0.571 1.400 2.068 sum -0.333 -16.501 -30.983 35.104 Atomic orbital electron populations 1.22022 0.94267 1.02812 1.02039 1.20904 0.94990 0.96065 0.81366 0.89136 1.44982 1.70544 1.14143 1.07663 1.16078 0.78020 0.84831 0.80955 1.90930 1.57904 1.15860 1.84507 1.42247 1.67334 1.16859 1.05362 1.17340 1.01656 0.91951 0.84736 1.21138 1.01033 0.94606 0.97461 1.20930 1.01255 0.99890 0.91914 1.20400 0.96594 0.95181 0.95570 1.18095 0.96408 0.93909 0.89610 1.21415 0.95601 1.34512 1.04743 0.92636 1.25965 1.01734 0.94729 0.97249 1.70096 1.34857 1.36662 1.15519 0.85362 0.79136 0.78045 0.78292 1.18854 1.20358 1.20011 1.20952 1.00625 0.93466 0.98150 1.21000 1.02610 1.01202 0.90115 1.22325 0.91272 0.85114 0.97294 0.89238 1.22742 0.95827 0.99722 0.92022 1.62241 1.08308 1.16231 1.40761 1.22418 0.86173 1.02630 1.01206 1.22892 0.96243 0.89740 1.02435 1.22822 0.92524 0.97035 0.89061 1.87985 1.68362 1.25936 1.48269 0.90191 0.91308 0.94272 0.75318 0.74044 0.85436 0.87310 0.98295 0.97500 0.92613 0.85601 0.82517 0.89877 0.94007 0.95616 0.89971 0.91168 0.88188 0.94192 0.91887 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.29 71.98 0.67 -1.90 16 2 C 0.17 2.79 2.49 45.00 0.11 2.90 16 3 H 0.09 1.75 7.58 -2.39 -0.02 1.73 16 4 N -0.72 -12.27 4.27 -457.81 -1.95 -14.23 16 5 C 0.70 17.82 8.37 179.05 1.50 19.32 16 6 O -0.61 -21.20 13.45 -3.99 -0.05 -21.25 16 7 N -0.67 -15.60 5.34 -317.18 -1.69 -17.29 16 8 C 0.14 4.39 6.29 38.15 0.24 4.63 16 9 C -0.12 -4.66 8.70 22.39 0.19 -4.46 16 10 C -0.12 -5.28 9.69 22.25 0.22 -5.07 16 11 C -0.08 -3.56 5.07 -19.84 -0.10 -3.66 16 12 C 0.06 3.15 5.10 29.10 0.15 3.30 16 13 C -0.52 -30.66 9.09 25.60 0.23 -30.43 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 17 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 18 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 21 C -0.11 -4.41 9.69 22.25 0.22 -4.20 16 22 C -0.13 -3.98 9.97 22.39 0.22 -3.76 16 23 C 0.10 1.21 2.60 30.63 0.08 1.29 16 24 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 25 C 0.03 0.32 4.78 86.32 0.41 0.73 16 26 N -0.55 -6.16 4.99 -921.43 -4.59 -10.76 16 27 C 0.02 0.22 9.60 127.69 1.23 1.45 16 28 C 0.01 0.12 5.66 86.32 0.49 0.61 16 29 C 0.06 0.49 7.01 72.02 0.50 0.99 16 30 O -0.39 -4.65 9.33 -148.98 -1.39 -6.04 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.12 7.56 -2.39 -0.02 1.10 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.41 5.15 7.88 -92.70 -0.73 4.42 16 35 H 0.42 6.32 8.84 -92.71 -0.82 5.50 16 36 H 0.13 4.92 6.23 -2.91 -0.02 4.90 16 37 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 38 H 0.00 -0.08 8.08 -2.39 -0.02 -0.10 16 39 H 0.01 0.39 8.08 -2.39 -0.02 0.37 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 44 H 0.04 0.56 7.03 -2.39 -0.02 0.54 16 45 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 47 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.04 0.36 8.14 -2.39 -0.02 0.35 16 50 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.12 0.51 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -74.39 411.45 -1.16 -75.55 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.62 Total: 21.63 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 6.82 Total: -17.73 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -7.96 Total: -99.20 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.44 Total: -27.29 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -74.39 -1.16 -75.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932572354.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.403 kcal (2) G-P(sol) polarization free energy of solvation -74.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds