Wall clock time and date at job start Wed Apr 1 2020 04:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46570 * 2 1 4 4 C 1.53000 * 109.47119 * 119.99541 * 2 1 3 5 5 N 1.46898 * 109.46913 * 175.00177 * 4 2 1 6 6 C 1.47019 * 110.99867 * 46.32258 * 5 4 2 7 7 C 1.53102 * 109.25220 * 182.35054 * 6 5 4 8 8 O 1.43013 * 109.29362 * 303.21635 * 7 6 5 9 9 C 1.43017 * 113.73803 * 58.65382 * 8 7 6 10 10 C 1.47015 * 110.99710 * 170.00621 * 5 4 2 11 11 N 1.46496 * 109.47044 * 240.00302 * 2 1 3 12 12 C 1.34771 * 120.00587 * 85.00088 * 11 2 1 13 13 O 1.21592 * 119.99967 * 359.97438 * 12 11 2 14 14 N 1.34776 * 120.00242 * 180.02562 * 12 11 2 15 15 C 1.39942 * 119.99888 * 175.37831 * 14 12 11 16 16 C 1.38865 * 120.06642 * 214.81204 * 15 14 12 17 17 C 1.38115 * 119.92908 * 179.77109 * 16 15 14 18 18 C 1.38289 * 120.06928 * 0.50217 * 17 16 15 19 19 C 1.50697 * 119.93103 * 179.72542 * 18 17 16 20 20 C 1.50703 * 109.47032 * 270.02468 * 19 18 17 21 21 H 1.07999 * 119.99933 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99737 * 180.02562 * 20 19 18 23 23 N 1.31510 * 119.99982 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99655 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47186 * 59.99906 * 24 22 20 26 26 H 1.48500 * 109.47297 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47204 * 300.00093 * 24 22 20 28 28 C 1.38286 * 120.13685 * 359.75039 * 18 17 16 29 29 C 1.38108 * 120.07156 * 359.97438 * 28 18 17 30 30 H 1.09007 * 109.47199 * 300.00013 * 1 2 3 31 31 H 1.09004 * 109.47475 * 59.99869 * 1 2 3 32 32 H 1.08996 * 109.47227 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46749 * 55.00403 * 4 2 1 34 34 H 1.09002 * 109.47052 * 295.00539 * 4 2 1 35 35 H 1.08999 * 109.47150 * 62.43969 * 6 5 4 36 36 H 1.08996 * 109.54501 * 302.30341 * 6 5 4 37 37 H 1.08999 * 109.50312 * 183.25888 * 7 6 5 38 38 H 1.08997 * 109.50566 * 63.17494 * 7 6 5 39 39 H 1.08994 * 109.50946 * 61.25926 * 9 8 7 40 40 H 1.08994 * 109.50494 * 181.35234 * 9 8 7 41 41 H 1.08999 * 109.50779 * 57.67043 * 10 5 4 42 42 H 1.09003 * 109.54241 * 297.55767 * 10 5 4 43 43 H 0.97002 * 119.99717 * 264.99763 * 11 2 1 44 44 H 0.96998 * 119.99610 * 355.37681 * 14 12 11 45 45 H 1.07997 * 120.03719 * 359.97438 * 16 15 14 46 46 H 1.08005 * 119.96845 * 180.25287 * 17 16 15 47 47 H 1.08999 * 109.47290 * 30.02258 * 19 18 17 48 48 H 1.08998 * 109.46856 * 150.02492 * 19 18 17 49 49 H 0.97001 * 119.99516 * 180.02562 * 23 22 20 50 50 H 1.08003 * 119.96280 * 179.97438 * 28 18 17 51 51 H 1.08000 * 120.03446 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8265 1.1905 6 6 4.1095 0.4564 0.8044 7 6 5.6274 0.2867 0.6984 8 8 6.1365 -0.2005 1.9428 9 6 5.5687 -1.4491 2.3479 10 6 4.0503 -1.2968 2.4718 11 7 2.0183 -0.6905 -1.1962 12 6 2.1471 -0.0183 -2.3571 13 8 1.8575 1.1614 -2.4119 14 7 2.5958 -0.6537 -3.4577 15 6 2.6381 0.0175 -4.6849 16 6 2.3834 -0.6710 -5.8636 17 6 2.4212 -0.0047 -7.0728 18 6 2.7226 1.3444 -7.1114 19 6 2.7690 2.0670 -8.4330 20 6 4.1652 1.9954 -8.9958 21 1 4.9413 1.4788 -8.4507 22 6 4.4519 2.5905 -10.2061 23 7 3.5070 3.2200 -10.8696 24 14 6.1827 2.5024 -10.9033 25 1 6.5642 1.0812 -11.1029 26 1 6.2288 3.2154 -12.2052 27 1 7.1312 3.1411 -9.9558 28 6 2.9818 2.0317 -5.9398 29 6 2.9400 1.3724 -4.7270 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 3.8792 1.2085 1.5590 36 1 3.7104 0.7726 -0.1593 37 1 6.0859 1.2486 0.4690 38 1 5.8595 -0.4253 -0.0937 39 1 5.7984 -2.2119 1.6040 40 1 5.9854 -1.7429 3.3112 41 1 3.6073 -2.2601 2.7247 42 1 3.8197 -0.5735 3.2539 43 1 2.2490 -1.6317 -1.1526 44 1 2.8895 -1.5763 -3.3991 45 1 2.1528 -1.7257 -5.8346 46 1 2.2192 -0.5387 -7.9896 47 1 2.0727 1.5981 -9.1282 48 1 2.4893 3.1103 -8.2867 49 1 3.7087 3.6383 -11.7212 50 1 3.2173 3.0852 -5.9732 51 1 3.1430 1.9096 -3.8123 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932581993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:24 Heat of formation + Delta-G solvation = -41.528814 kcal Electronic energy + Delta-G solvation = -30401.013889 eV Core-core repulsion = 26300.366284 eV Total energy + Delta-G solvation = -4100.647605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.73428 -39.90158 -38.45271 -37.07885 -34.94704 -34.56352 -33.01547 -31.61564 -31.45754 -30.23528 -29.94914 -28.42027 -26.50844 -25.03385 -24.46167 -23.39675 -22.30360 -21.78559 -21.14955 -20.37206 -20.11274 -18.52059 -17.36140 -17.01112 -16.48798 -16.26940 -16.04893 -15.60268 -15.48035 -15.22207 -15.05244 -14.87033 -14.60260 -14.41381 -14.17673 -13.77181 -13.44424 -13.16710 -12.94086 -12.76035 -12.69899 -12.60053 -12.47685 -12.06814 -12.02762 -11.91480 -11.80045 -11.35401 -11.23509 -11.15564 -10.86824 -10.78851 -10.59788 -10.35717 -10.09061 -10.06132 -9.82722 -9.41192 -9.27126 -9.17659 -8.89636 -8.38280 -8.21392 -7.30044 -5.99744 -4.03634 2.01439 2.14335 2.58576 3.18014 3.27838 3.34574 3.38562 3.41935 3.49688 4.13721 4.16990 4.42608 4.46299 4.51605 4.62838 4.69807 4.73499 4.78523 4.85389 4.95515 5.03102 5.12115 5.23139 5.24455 5.33971 5.34352 5.36428 5.48623 5.49598 5.57465 5.61417 5.67319 5.89726 6.01338 6.12908 6.16035 6.26861 6.29979 6.43482 6.47092 6.64691 6.73923 6.74805 7.01659 7.13085 7.23567 7.28381 7.56705 7.79161 7.92325 7.95928 7.96215 8.37153 8.57455 9.01497 9.59710 11.09760 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002091 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.037506 B =13387.908950 C =14593.763036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.159 3.841 3 H 0.090 0.910 4 C 0.046 3.954 5 N -0.532 5.532 6 C 0.012 3.988 7 C 0.064 3.936 8 O -0.386 6.386 9 C 0.064 3.936 10 C 0.017 3.983 11 N -0.731 5.731 12 C 0.702 3.298 13 O -0.576 6.576 14 N -0.681 5.681 15 C 0.122 3.878 16 C -0.146 4.146 17 C -0.109 4.109 18 C -0.044 4.044 19 C 0.048 3.952 20 C -0.510 4.510 21 H 0.056 0.944 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.895 3.105 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 C -0.109 4.109 29 C -0.116 4.116 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.042 0.958 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.399 0.601 44 H 0.401 0.599 45 H 0.112 0.888 46 H 0.121 0.879 47 H 0.028 0.972 48 H 0.028 0.972 49 H 0.262 0.738 50 H 0.120 0.880 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 -12.880 28.965 31.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.054 3.946 3 H 0.108 0.892 4 C -0.083 4.083 5 N -0.257 5.257 6 C -0.116 4.116 7 C -0.013 4.013 8 O -0.305 6.305 9 C -0.013 4.013 10 C -0.111 4.111 11 N -0.387 5.387 12 C 0.403 3.597 13 O -0.453 6.453 14 N -0.328 5.328 15 C 0.029 3.971 16 C -0.166 4.166 17 C -0.128 4.128 18 C -0.045 4.045 19 C 0.011 3.989 20 C -0.548 4.548 21 H 0.075 0.925 22 C -0.144 4.144 23 N -0.534 5.534 24 Si 0.723 3.277 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.128 4.128 29 C -0.136 4.136 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.233 0.767 44 H 0.235 0.765 45 H 0.130 0.870 46 H 0.139 0.861 47 H 0.046 0.954 48 H 0.047 0.953 49 H 0.072 0.928 50 H 0.138 0.862 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.512 -11.942 28.564 31.062 hybrid contribution 0.677 -0.563 0.085 0.885 sum -1.835 -12.505 28.648 31.313 Atomic orbital electron populations 1.22182 0.94825 1.02306 1.03001 1.20859 0.93916 0.97258 0.82605 0.89182 1.22523 0.87575 1.01423 0.96748 1.62255 1.04901 1.28674 1.29918 1.22921 0.96030 0.90280 1.02384 1.22676 0.92183 1.00257 0.86153 1.88002 1.65186 1.37959 1.39345 1.22639 0.91396 0.86544 1.00771 1.22805 0.96684 1.01167 0.90440 1.45014 1.71571 1.13801 1.08308 1.15939 0.78298 0.85247 0.80260 1.90943 1.56448 1.13934 1.83963 1.42440 1.67538 1.16082 1.06731 1.17291 1.04106 0.92607 0.83105 1.20714 1.04772 0.99314 0.91807 1.20856 1.00878 0.94567 0.96464 1.20698 0.92859 0.93744 0.97214 1.18338 0.97599 0.95279 0.87645 1.21038 0.94694 1.34686 1.04424 0.92527 1.25018 0.97200 0.95277 0.96912 1.69950 1.32545 1.35758 1.15115 0.86603 0.84703 0.78222 0.78179 1.20206 1.21284 1.20187 1.21010 1.00311 1.00122 0.91365 1.21131 1.00604 0.93310 0.98556 0.91744 0.91268 0.92350 0.89733 0.93018 0.93957 0.88503 0.88292 0.92154 0.92237 0.88545 0.89604 0.93887 0.76703 0.76511 0.86986 0.86122 0.95380 0.95349 0.92834 0.86227 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.48 37.16 0.35 -0.88 16 2 C 0.16 1.24 1.88 -67.93 -0.13 1.12 16 3 H 0.09 0.90 6.05 -51.92 -0.31 0.59 16 4 C 0.05 0.26 4.84 -3.82 -0.02 0.24 16 5 N -0.53 -3.59 4.61 -234.30 -1.08 -4.67 16 6 C 0.01 0.10 4.90 -3.71 -0.02 0.08 16 7 C 0.06 0.56 7.01 37.21 0.26 0.82 16 8 O -0.39 -3.67 10.83 -35.23 -0.38 -4.06 16 9 C 0.06 0.42 7.01 37.21 0.26 0.68 16 10 C 0.02 0.10 5.63 -3.71 -0.02 0.08 16 11 N -0.73 -6.27 4.27 -58.67 -0.25 -6.52 16 12 C 0.70 9.02 8.14 -86.92 -0.71 8.31 16 13 O -0.58 -9.75 13.44 5.29 0.07 -9.68 16 14 N -0.68 -8.51 5.34 -14.22 -0.08 -8.58 16 15 C 0.12 2.02 6.30 -83.69 -0.53 1.49 16 16 C -0.15 -2.40 9.97 -39.39 -0.39 -2.79 16 17 C -0.11 -2.13 9.69 -39.61 -0.38 -2.51 16 18 C -0.04 -0.99 5.07 -104.59 -0.53 -1.52 16 19 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 20 C -0.51 -14.41 9.09 -34.44 -0.31 -14.73 16 21 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 24 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C -0.11 -2.27 9.69 -39.61 -0.38 -2.66 16 29 C -0.12 -2.17 8.69 -39.40 -0.34 -2.52 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.28 8.08 -51.93 -0.42 -0.14 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.96 5.54 -51.93 -0.29 0.67 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.40 2.57 8.62 -40.82 -0.35 2.22 16 44 H 0.40 3.62 8.84 -40.82 -0.36 3.26 16 45 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 47 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 48 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.12 2.45 8.06 -52.48 -0.42 2.02 16 51 H 0.13 2.42 6.22 -52.49 -0.33 2.09 16 LS Contribution 409.89 15.07 6.18 6.18 Total: -1.00 -33.33 409.89 -11.32 -44.65 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.36 Total: 4.07 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -3.14 Total: -12.14 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.67 Total: -45.71 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.31 Total: -13.74 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.33 -11.32 -44.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932581993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.121 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds