Wall clock time and date at job start Wed Apr 1 2020 04:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00394 * 2 1 4 4 C 1.50703 * 109.47280 * 179.97438 * 3 2 1 5 5 C 1.38352 * 120.34637 * 89.99809 * 4 3 2 6 6 N 1.31928 * 121.07678 * 180.02562 * 5 4 3 7 7 C 1.31692 * 121.88366 * 0.02562 * 6 5 4 8 8 C 1.39518 * 120.56355 * 0.02562 * 7 6 5 9 9 C 1.47837 * 120.55977 * 179.97438 * 8 7 6 10 10 O 1.21550 * 120.00346 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99963 * 359.97438 * 9 8 7 12 12 C 1.46502 * 120.00140 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46930 * 35.00435 * 12 11 9 14 14 C 1.52995 * 109.47185 * 275.00192 * 12 11 9 15 15 C 1.52998 * 109.46854 * 154.99960 * 12 11 9 16 16 H 1.09005 * 109.52424 * 304.91560 * 15 12 11 17 17 C 1.53041 * 109.49655 * 184.84205 * 15 12 11 18 18 C 1.53070 * 109.65895 * 178.74768 * 17 15 12 19 19 C 1.53192 * 109.29486 * 61.15317 * 18 17 15 20 20 N 1.46923 * 108.89086 * 305.57609 * 19 18 17 21 21 C 1.36938 * 120.62890 * 233.55909 * 20 19 18 22 22 H 1.08011 * 119.99821 * 151.82869 * 21 20 19 23 23 C 1.38810 * 120.00150 * 331.82504 * 21 20 19 24 24 N 1.31613 * 120.00273 * 343.07447 * 23 21 20 25 25 Si 1.86803 * 119.99828 * 163.06738 * 23 21 20 26 26 H 1.48503 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47229 * 120.00279 * 25 23 21 28 28 H 1.48502 * 109.47136 * 240.00365 * 25 23 21 29 29 C 1.46928 * 118.73969 * 53.53853 * 20 19 18 30 30 C 1.38358 * 120.34717 * 270.30414 * 4 3 2 31 31 H 1.09005 * 109.47103 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46966 * 300.00118 * 1 2 3 33 33 H 1.08999 * 109.46883 * 60.00112 * 1 2 3 34 34 H 1.09004 * 109.47298 * 60.00263 * 3 2 1 35 35 H 1.08994 * 109.47391 * 299.99961 * 3 2 1 36 36 H 1.08004 * 119.46252 * 0.02562 * 5 4 3 37 37 H 1.07997 * 119.71847 * 180.02562 * 7 6 5 38 38 H 0.96995 * 119.99769 * 359.97438 * 11 9 8 39 39 H 1.09008 * 109.46874 * 299.99698 * 14 12 11 40 40 H 1.08999 * 109.47578 * 59.99870 * 14 12 11 41 41 H 1.09004 * 109.46863 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.45782 * 298.70130 * 17 15 12 43 43 H 1.08998 * 109.46417 * 58.67464 * 17 15 12 44 44 H 1.08996 * 109.39171 * 301.27441 * 18 17 15 45 45 H 1.09003 * 109.62547 * 181.16407 * 18 17 15 46 46 H 1.09002 * 109.58742 * 185.72218 * 19 18 17 47 47 H 1.08998 * 109.59351 * 65.43846 * 19 18 17 48 48 H 0.96997 * 120.00271 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.58144 * 66.18005 * 29 20 19 50 50 H 1.09000 * 109.58636 * 186.59848 * 29 20 19 51 51 H 1.07998 * 120.85799 * 359.97438 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2099 1.1308 -1.1930 6 7 5.5249 1.0261 -1.2093 7 6 6.2320 0.9692 -0.0997 8 6 5.6038 1.0181 1.1451 9 6 6.3976 0.9537 2.3906 10 8 5.8399 0.9976 3.4697 11 7 7.7397 0.8463 2.3296 12 6 8.5264 0.7831 3.5639 13 1 7.9675 0.2362 4.3233 14 6 8.8092 2.2019 4.0617 15 6 9.8495 0.0657 3.2891 16 1 9.6495 -0.9129 2.8525 17 6 10.6184 -0.1080 4.6009 18 6 11.9288 -0.8531 4.3349 19 6 12.7909 -0.0326 3.3704 20 7 12.0058 0.2624 2.1641 21 6 12.4912 -0.0494 0.9221 22 1 11.8081 -0.2669 0.1143 23 6 13.8612 -0.0860 0.7015 24 7 14.6810 0.4882 1.5561 25 14 14.5412 -0.9503 -0.8085 26 1 13.4201 -1.5103 -1.6053 27 1 15.2990 0.0222 -1.6364 28 1 15.4452 -2.0496 -0.3845 29 6 10.6898 0.8979 2.3156 30 6 4.2085 1.1250 1.1949 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6888 1.8463 0.8900 35 1 1.6888 1.8463 -0.8899 36 1 3.6689 1.1739 -2.1268 37 1 7.3072 0.8840 -0.1538 38 1 8.1847 0.8109 1.4685 39 1 9.3682 2.7487 3.3022 40 1 7.8666 2.7130 4.2574 41 1 9.3949 2.1547 4.9798 42 1 10.8397 0.8717 5.0244 43 1 10.0126 -0.6792 5.3042 44 1 11.7093 -1.8240 3.8907 45 1 12.4663 -0.9947 5.2726 46 1 13.6787 -0.6034 3.0980 47 1 13.0890 0.8999 3.8495 48 1 15.6383 0.4629 1.4017 49 1 10.8144 1.9064 2.7101 50 1 10.1913 0.9412 1.3472 51 1 3.6892 1.1616 2.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025449106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:29 Heat of formation + Delta-G solvation = -30.091020 kcal Electronic energy + Delta-G solvation = -30581.292271 eV Core-core repulsion = 26481.140646 eV Total energy + Delta-G solvation = -4100.151625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.95263 -39.56955 -38.20333 -37.90835 -35.27401 -33.45389 -33.13125 -32.38433 -30.74002 -30.47178 -28.14098 -27.85638 -25.95781 -25.32466 -25.18168 -23.48475 -22.96201 -22.18120 -20.78173 -20.19296 -18.75623 -17.96615 -17.25629 -16.97139 -16.86181 -16.59069 -15.94519 -15.70495 -15.41904 -15.10804 -14.90381 -14.46095 -14.24927 -13.86953 -13.79281 -13.50186 -13.44422 -13.25542 -13.09528 -12.87266 -12.54766 -12.39662 -12.33075 -12.23430 -11.89680 -11.82802 -11.65008 -11.01305 -10.93988 -10.60963 -10.48287 -10.35963 -10.21526 -10.18814 -10.15102 -10.09000 -9.89252 -9.69571 -9.58374 -9.47349 -9.40727 -8.98149 -8.48001 -6.67858 -5.80771 -3.23684 0.35385 0.81535 2.68978 3.06397 3.32765 3.35912 3.44339 3.46023 3.73031 4.01181 4.33319 4.40059 4.46922 4.54498 4.57742 4.72807 4.81977 4.91517 4.96739 4.99928 5.17201 5.20444 5.24811 5.25687 5.37933 5.40434 5.55511 5.66675 5.68508 5.71099 5.78049 5.84234 5.98797 6.10680 6.19368 6.20795 6.23201 6.32120 6.46116 6.55428 6.59679 6.63354 6.68993 6.75904 6.85298 6.95912 7.38741 7.47560 7.54555 7.66329 7.77531 8.13549 8.42787 9.19099 9.82549 10.39145 11.27395 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013557 B = 0.002377 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.873478 B =11774.914009 C =13316.414145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.108 3.892 4 C -0.156 4.156 5 C 0.142 3.858 6 N -0.484 5.484 7 C 0.144 3.856 8 C -0.186 4.186 9 C 0.563 3.437 10 O -0.540 6.540 11 N -0.712 5.712 12 C 0.150 3.850 13 H 0.084 0.916 14 C -0.165 4.165 15 C -0.114 4.114 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.143 4.143 19 C 0.170 3.830 20 N -0.591 5.591 21 C -0.253 4.253 22 H 0.065 0.935 23 C 0.003 3.997 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.289 1.289 29 C 0.151 3.849 30 C 0.004 3.996 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.402 0.598 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.086 0.914 47 H 0.017 0.983 48 H 0.253 0.747 49 H 0.027 0.973 50 H 0.046 0.954 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.054 2.383 -0.235 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.032 3.968 4 C -0.158 4.158 5 C -0.015 4.015 6 N -0.192 5.192 7 C -0.014 4.014 8 C -0.191 4.191 9 C 0.349 3.651 10 O -0.418 6.418 11 N -0.364 5.364 12 C 0.046 3.954 13 H 0.102 0.898 14 C -0.223 4.223 15 C -0.135 4.135 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.182 4.182 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.383 4.383 22 H 0.083 0.917 23 C -0.196 4.196 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.216 1.216 29 C 0.024 3.976 30 C -0.023 4.023 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.178 0.822 37 H 0.181 0.819 38 H 0.238 0.762 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.104 0.896 47 H 0.036 0.964 48 H 0.063 0.937 49 H 0.044 0.956 50 H 0.065 0.935 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -23.679 2.227 -0.290 23.785 hybrid contribution 0.053 -0.209 -0.387 0.443 sum -23.626 2.018 -0.676 23.721 Atomic orbital electron populations 1.22785 0.80569 1.03110 1.00145 1.87987 1.19947 1.27094 1.95445 1.21222 0.88573 0.85449 1.01605 1.20562 0.95862 1.05150 0.94256 1.22925 0.89976 0.91062 0.97557 1.67794 1.07790 1.12727 1.30864 1.23157 1.00622 0.90895 0.86764 1.21073 0.95110 1.07802 0.95130 1.17964 0.82330 0.76625 0.88151 1.90760 1.71067 1.50406 1.29568 1.46129 1.05872 1.73496 1.10855 1.21087 0.91704 0.97035 0.85586 0.89811 1.22266 1.01568 0.96457 1.02045 1.21971 0.92863 1.00078 0.98574 0.90867 1.21418 0.96657 1.00353 0.95383 1.22185 0.96426 0.99894 0.99673 1.20781 0.93736 0.96073 0.85017 1.44017 1.15659 1.68821 1.02783 1.19193 0.90207 1.40680 0.88179 0.91719 1.25040 0.96944 0.99673 0.97933 1.70039 1.02520 1.44432 1.37527 0.86256 0.78904 0.79234 0.82573 1.20219 1.21738 1.21581 1.21002 0.87401 0.93750 0.95456 1.21613 0.92474 0.89347 0.98849 0.89367 0.93836 0.93840 0.91849 0.91703 0.82183 0.81911 0.76184 0.91481 0.92865 0.91255 0.92220 0.93511 0.92814 0.93173 0.89624 0.96449 0.93685 0.95571 0.93534 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.42 10.69 -35.23 -0.38 -3.80 16 3 C 0.11 0.77 6.08 36.01 0.22 0.99 16 4 C -0.16 -1.46 5.52 -104.53 -0.58 -2.04 16 5 C 0.14 1.37 10.85 -17.47 -0.19 1.18 16 6 N -0.48 -5.68 10.35 -12.91 -0.13 -5.82 16 7 C 0.14 1.64 10.71 -17.13 -0.18 1.46 16 8 C -0.19 -2.23 5.89 -104.82 -0.62 -2.85 16 9 C 0.56 7.80 7.75 -12.33 -0.10 7.70 16 10 O -0.54 -8.96 16.08 5.32 0.09 -8.87 16 11 N -0.71 -9.34 4.97 -54.75 -0.27 -9.62 16 12 C 0.15 2.12 2.35 -67.93 -0.16 1.96 16 13 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 14 C -0.17 -2.25 8.76 37.16 0.33 -1.92 16 15 C -0.11 -1.83 2.28 -90.50 -0.21 -2.04 16 16 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 17 C -0.10 -1.61 4.88 -26.67 -0.13 -1.74 16 18 C -0.14 -2.64 6.09 -26.60 -0.16 -2.80 16 19 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 20 N -0.59 -14.10 3.00 -172.32 -0.52 -14.62 16 21 C -0.25 -6.70 9.58 -15.06 -0.14 -6.84 16 22 H 0.07 1.68 7.89 -52.48 -0.41 1.26 16 23 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 24 N -0.90 -25.69 11.20 55.49 0.62 -25.07 16 25 Si 0.90 21.36 29.59 -169.99 -5.03 16.34 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 C 0.15 2.88 5.26 -3.71 -0.02 2.86 16 30 C 0.00 0.04 9.39 -38.87 -0.37 -0.33 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.06 0.33 8.09 -51.93 -0.42 -0.10 16 36 H 0.16 1.10 8.06 -52.48 -0.42 0.67 16 37 H 0.16 1.62 6.42 -52.49 -0.34 1.28 16 38 H 0.40 4.80 5.34 -40.82 -0.22 4.58 16 39 H 0.07 0.94 6.23 -51.92 -0.32 0.62 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.90 6.59 -51.93 -0.34 0.56 16 42 H 0.06 0.94 6.62 -51.93 -0.34 0.60 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.03 0.52 6.06 -51.93 -0.31 0.20 16 50 H 0.05 0.85 6.75 -51.93 -0.35 0.49 16 51 H 0.15 1.55 7.74 -52.49 -0.41 1.14 16 LS Contribution 402.92 15.07 6.07 6.07 Total: -1.00 -32.30 402.92 -8.81 -41.11 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.96 Total: 3.51 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.30 Total: 0.77 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.30 Total: -55.13 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.29 Total: -12.67 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.30 -8.81 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025449106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.015 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds