Wall clock time and date at job start Wed Apr 1 2020 04:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00394 * 2 1 4 4 C 1.50703 * 109.47280 * 179.97438 * 3 2 1 5 5 C 1.38352 * 120.34637 * 89.99809 * 4 3 2 6 6 N 1.31928 * 121.07678 * 180.02562 * 5 4 3 7 7 C 1.31692 * 121.88366 * 0.02562 * 6 5 4 8 8 C 1.39518 * 120.56355 * 0.02562 * 7 6 5 9 9 C 1.47837 * 120.55977 * 179.97438 * 8 7 6 10 10 O 1.21550 * 120.00346 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99963 * 359.97438 * 9 8 7 12 12 C 1.46502 * 120.00140 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46930 * 35.00435 * 12 11 9 14 14 C 1.52995 * 109.47185 * 275.00192 * 12 11 9 15 15 C 1.52998 * 109.46854 * 154.99960 * 12 11 9 16 16 H 1.09005 * 109.52424 * 304.91560 * 15 12 11 17 17 C 1.53041 * 109.49655 * 184.84205 * 15 12 11 18 18 C 1.53070 * 109.65895 * 178.74768 * 17 15 12 19 19 C 1.53192 * 109.29486 * 61.15317 * 18 17 15 20 20 N 1.46923 * 108.89086 * 305.57609 * 19 18 17 21 21 C 1.36938 * 120.62890 * 233.55909 * 20 19 18 22 22 H 1.08011 * 119.99821 * 151.82869 * 21 20 19 23 23 C 1.38810 * 120.00150 * 331.82504 * 21 20 19 24 24 N 1.31613 * 120.00273 * 343.07447 * 23 21 20 25 25 Si 1.86803 * 119.99828 * 163.06738 * 23 21 20 26 26 H 1.48503 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47229 * 120.00279 * 25 23 21 28 28 H 1.48502 * 109.47136 * 240.00365 * 25 23 21 29 29 C 1.46928 * 118.73969 * 53.53853 * 20 19 18 30 30 C 1.38358 * 120.34717 * 270.30414 * 4 3 2 31 31 H 1.09005 * 109.47103 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46966 * 300.00118 * 1 2 3 33 33 H 1.08999 * 109.46883 * 60.00112 * 1 2 3 34 34 H 1.09004 * 109.47298 * 60.00263 * 3 2 1 35 35 H 1.08994 * 109.47391 * 299.99961 * 3 2 1 36 36 H 1.08004 * 119.46252 * 0.02562 * 5 4 3 37 37 H 1.07997 * 119.71847 * 180.02562 * 7 6 5 38 38 H 0.96995 * 119.99769 * 359.97438 * 11 9 8 39 39 H 1.09008 * 109.46874 * 299.99698 * 14 12 11 40 40 H 1.08999 * 109.47578 * 59.99870 * 14 12 11 41 41 H 1.09004 * 109.46863 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.45782 * 298.70130 * 17 15 12 43 43 H 1.08998 * 109.46417 * 58.67464 * 17 15 12 44 44 H 1.08996 * 109.39171 * 301.27441 * 18 17 15 45 45 H 1.09003 * 109.62547 * 181.16407 * 18 17 15 46 46 H 1.09002 * 109.58742 * 185.72218 * 19 18 17 47 47 H 1.08998 * 109.59351 * 65.43846 * 19 18 17 48 48 H 0.96997 * 120.00271 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.58144 * 66.18005 * 29 20 19 50 50 H 1.09000 * 109.58636 * 186.59848 * 29 20 19 51 51 H 1.07998 * 120.85799 * 359.97438 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2099 1.1308 -1.1930 6 7 5.5249 1.0261 -1.2093 7 6 6.2320 0.9692 -0.0997 8 6 5.6038 1.0181 1.1451 9 6 6.3976 0.9537 2.3906 10 8 5.8399 0.9976 3.4697 11 7 7.7397 0.8463 2.3296 12 6 8.5264 0.7831 3.5639 13 1 7.9675 0.2362 4.3233 14 6 8.8092 2.2019 4.0617 15 6 9.8495 0.0657 3.2891 16 1 9.6495 -0.9129 2.8525 17 6 10.6184 -0.1080 4.6009 18 6 11.9288 -0.8531 4.3349 19 6 12.7909 -0.0326 3.3704 20 7 12.0058 0.2624 2.1641 21 6 12.4912 -0.0494 0.9221 22 1 11.8081 -0.2669 0.1143 23 6 13.8612 -0.0860 0.7015 24 7 14.6810 0.4882 1.5561 25 14 14.5412 -0.9503 -0.8085 26 1 13.4201 -1.5103 -1.6053 27 1 15.2990 0.0222 -1.6364 28 1 15.4452 -2.0496 -0.3845 29 6 10.6898 0.8979 2.3156 30 6 4.2085 1.1250 1.1949 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6888 1.8463 0.8900 35 1 1.6888 1.8463 -0.8899 36 1 3.6689 1.1739 -2.1268 37 1 7.3072 0.8840 -0.1538 38 1 8.1847 0.8109 1.4685 39 1 9.3682 2.7487 3.3022 40 1 7.8666 2.7130 4.2574 41 1 9.3949 2.1547 4.9798 42 1 10.8397 0.8717 5.0244 43 1 10.0126 -0.6792 5.3042 44 1 11.7093 -1.8240 3.8907 45 1 12.4663 -0.9947 5.2726 46 1 13.6787 -0.6034 3.0980 47 1 13.0890 0.8999 3.8495 48 1 15.6383 0.4629 1.4017 49 1 10.8144 1.9064 2.7101 50 1 10.1913 0.9412 1.3472 51 1 3.6892 1.1616 2.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025449106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:28 Heat of formation + Delta-G solvation = -50.663317 kcal Electronic energy + Delta-G solvation = -30582.184352 eV Core-core repulsion = 26481.140646 eV Total energy + Delta-G solvation = -4101.043706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.86055 -40.64356 -39.39926 -38.68067 -36.72332 -34.79601 -34.07570 -33.51752 -32.29514 -31.95622 -29.47855 -28.41748 -27.20659 -26.51164 -26.17899 -24.71418 -23.92362 -23.69338 -22.18573 -21.31690 -20.17716 -19.00607 -18.54883 -18.09328 -17.65927 -17.38350 -16.87160 -16.79996 -16.44594 -16.23486 -16.08341 -15.83766 -15.65544 -15.21703 -15.02240 -14.78857 -14.61951 -14.24024 -14.07158 -14.03104 -13.88231 -13.68177 -13.33815 -13.29992 -13.03226 -12.91187 -12.78647 -12.69788 -12.36577 -12.24764 -12.04716 -11.93047 -11.70032 -11.50811 -11.40990 -11.15692 -11.04418 -11.00626 -10.72314 -10.50948 -10.49960 -10.33109 -10.07358 -8.62743 -7.84722 -5.29514 -0.48745 0.00647 1.46480 1.49399 1.58766 1.72024 2.02103 2.52335 2.58556 3.04778 3.23719 3.30152 3.58527 3.60842 3.70090 3.73653 3.83311 3.92498 3.99889 4.01968 4.06554 4.28576 4.36375 4.42323 4.47362 4.50639 4.53965 4.57443 4.62936 4.66893 4.71309 4.86511 4.88181 4.89577 4.90759 4.97919 5.03689 5.07488 5.15706 5.21292 5.30968 5.36491 5.41124 5.46675 5.51139 5.60459 5.70337 5.81830 6.17577 6.40309 6.42853 6.73094 7.06378 7.17895 7.89821 8.41126 9.21330 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013557 B = 0.002377 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.873478 B =11774.914009 C =13316.414145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.107 3.893 4 C -0.151 4.151 5 C 0.143 3.857 6 N -0.505 5.505 7 C 0.140 3.860 8 C -0.198 4.198 9 C 0.567 3.433 10 O -0.570 6.570 11 N -0.708 5.708 12 C 0.159 3.841 13 H 0.084 0.916 14 C -0.160 4.160 15 C -0.098 4.098 16 H 0.066 0.934 17 C -0.097 4.097 18 C -0.132 4.132 19 C 0.174 3.826 20 N -0.609 5.609 21 C -0.256 4.256 22 H 0.069 0.931 23 C -0.052 4.052 24 N -0.934 5.934 25 Si 0.961 3.039 26 H -0.266 1.266 27 H -0.294 1.294 28 H -0.293 1.293 29 C 0.149 3.851 30 C -0.004 4.004 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.190 0.810 37 H 0.172 0.828 38 H 0.407 0.593 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.049 0.951 47 H -0.004 1.004 48 H 0.248 0.752 49 H 0.025 0.975 50 H 0.053 0.947 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.525 2.231 -0.791 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.031 3.969 4 C -0.153 4.153 5 C -0.014 4.014 6 N -0.213 5.213 7 C -0.018 4.018 8 C -0.204 4.204 9 C 0.354 3.646 10 O -0.451 6.451 11 N -0.359 5.359 12 C 0.055 3.945 13 H 0.102 0.898 14 C -0.218 4.218 15 C -0.119 4.119 16 H 0.085 0.915 17 C -0.135 4.135 18 C -0.171 4.171 19 C 0.049 3.951 20 N -0.332 5.332 21 C -0.387 4.387 22 H 0.086 0.914 23 C -0.247 4.247 24 N -0.581 5.581 25 Si 0.790 3.210 26 H -0.190 1.190 27 H -0.221 1.221 28 H -0.220 1.220 29 C 0.024 3.976 30 C -0.030 4.030 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.207 0.793 37 H 0.188 0.812 38 H 0.245 0.755 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.067 0.933 47 H 0.015 0.985 48 H 0.057 0.943 49 H 0.043 0.957 50 H 0.072 0.928 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.182 2.074 -0.856 26.278 hybrid contribution 0.722 -0.130 -0.238 0.771 sum -25.460 1.944 -1.094 25.557 Atomic orbital electron populations 1.22952 0.78948 1.03828 1.01347 1.87932 1.21802 1.28033 1.95721 1.21341 0.86848 0.85283 1.03427 1.20812 0.97294 1.03780 0.93459 1.23443 0.89469 0.89597 0.98896 1.67834 1.08942 1.13594 1.30924 1.23267 1.01124 0.90828 0.86582 1.20939 0.95474 1.09527 0.94412 1.18186 0.82312 0.75733 0.88370 1.90739 1.71574 1.51997 1.30762 1.46073 1.05824 1.73201 1.10851 1.20915 0.90543 0.97087 0.85966 0.89826 1.22211 1.01537 0.95847 1.02178 1.21747 0.93189 0.99211 0.97765 0.91528 1.21413 0.95534 1.00743 0.95821 1.22021 0.97100 0.98863 0.99084 1.20600 0.93580 0.95210 0.85750 1.44273 1.17077 1.69577 1.02225 1.19533 0.90438 1.39449 0.89239 0.91356 1.25751 0.97423 1.00877 1.00668 1.70185 1.02299 1.46195 1.39373 0.85294 0.78216 0.77827 0.79643 1.18990 1.22122 1.22011 1.21144 0.85744 0.93874 0.96871 1.21761 0.92223 0.89404 0.99656 0.89008 0.92996 0.92247 0.90803 0.89130 0.79337 0.81152 0.75511 0.92072 0.92915 0.90458 0.91686 0.90724 0.93351 0.91259 0.93279 0.98546 0.94276 0.95693 0.92828 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.54 10.69 -148.98 -1.59 -8.13 16 3 C 0.11 1.27 6.08 71.24 0.43 1.70 16 4 C -0.15 -2.56 5.52 -19.81 -0.11 -2.67 16 5 C 0.14 2.46 10.85 84.71 0.92 3.38 16 6 N -0.51 -11.16 10.35 -194.76 -2.01 -13.18 16 7 C 0.14 3.08 10.71 85.02 0.91 3.99 16 8 C -0.20 -4.62 5.89 -19.99 -0.12 -4.74 16 9 C 0.57 15.30 7.75 86.78 0.67 15.97 16 10 O -0.57 -18.59 16.08 -3.87 -0.06 -18.65 16 11 N -0.71 -17.86 4.97 -445.42 -2.21 -20.08 16 12 C 0.16 4.26 2.35 44.99 0.11 4.36 16 13 H 0.08 2.33 7.58 -2.39 -0.02 2.31 16 14 C -0.16 -4.11 8.76 71.98 0.63 -3.48 16 15 C -0.10 -3.02 2.28 -10.72 -0.02 -3.04 16 16 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 17 C -0.10 -2.92 4.88 30.63 0.15 -2.77 16 18 C -0.13 -4.75 6.09 30.68 0.19 -4.56 16 19 C 0.17 8.21 5.30 86.36 0.46 8.67 16 20 N -0.61 -29.24 3.00 -699.10 -2.09 -31.34 16 21 C -0.26 -13.65 9.58 84.03 0.81 -12.85 16 22 H 0.07 3.52 7.89 -2.90 -0.02 3.49 16 23 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 24 N -0.93 -54.82 11.20 21.65 0.24 -54.58 16 25 Si 0.96 44.52 29.59 68.60 2.03 46.55 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 28 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 29 C 0.15 5.61 5.26 86.36 0.45 6.06 16 30 C 0.00 -0.08 9.39 22.73 0.21 0.13 16 31 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.07 0.71 8.09 -2.38 -0.02 0.69 16 35 H 0.09 0.60 8.09 -2.39 -0.02 0.58 16 36 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.17 3.27 6.42 -2.91 -0.02 3.25 16 38 H 0.41 9.35 5.34 -92.71 -0.49 8.86 16 39 H 0.06 1.64 6.23 -2.38 -0.01 1.63 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.86 6.59 -2.39 -0.02 1.85 16 42 H 0.06 1.91 6.62 -2.38 -0.02 1.90 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.05 2.66 6.06 -2.39 -0.01 2.65 16 47 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 48 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 49 H 0.03 0.97 6.06 -2.39 -0.01 0.95 16 50 H 0.05 1.91 6.75 -2.39 -0.02 1.89 16 51 H 0.15 3.01 7.74 -2.91 -0.02 2.99 16 Total: -1.00 -70.33 402.92 2.09 -68.23 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.44 Total: 22.00 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 7.35 Total: 9.17 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -6.08 Total: -119.17 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -1.65 Total: -26.78 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -70.33 2.09 -68.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025449106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.569 kcal (2) G-P(sol) polarization free energy of solvation -70.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds