Wall clock time and date at job start Wed Apr 1 2020 04:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99929 * 2 1 4 4 C 1.50709 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.38356 * 120.34693 * 270.01788 * 4 3 2 6 6 N 1.31920 * 121.07791 * 179.97438 * 5 4 3 7 7 C 1.31693 * 121.88474 * 359.66245 * 6 5 4 8 8 C 1.39526 * 120.55818 * 0.62381 * 7 6 5 9 9 C 1.47844 * 120.55446 * 179.68152 * 8 7 6 10 10 O 1.21548 * 120.00013 * 179.72348 * 9 8 7 11 11 N 1.34776 * 120.00075 * 359.73248 * 9 8 7 12 12 C 1.46499 * 119.99967 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47052 * 324.98681 * 12 11 9 14 14 C 1.52998 * 109.47558 * 84.99390 * 12 11 9 15 15 C 1.53005 * 109.46990 * 204.99697 * 12 11 9 16 16 H 1.09003 * 109.49947 * 59.93170 * 15 12 11 17 17 C 1.53039 * 109.49946 * 179.97438 * 15 12 11 18 18 C 1.53042 * 109.53854 * 181.31517 * 17 15 12 19 19 C 1.53193 * 109.30938 * 298.63405 * 18 17 15 20 20 N 1.46932 * 108.77584 * 54.64007 * 19 18 17 21 21 C 1.36936 * 120.62996 * 126.41090 * 20 19 18 22 22 H 1.08003 * 119.99520 * 207.66974 * 21 20 19 23 23 C 1.38808 * 120.00328 * 27.66380 * 21 20 19 24 24 N 1.31624 * 119.99764 * 17.37522 * 23 21 20 25 25 Si 1.86801 * 120.00244 * 197.36595 * 23 21 20 26 26 H 1.48505 * 109.46926 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47035 * 120.00119 * 25 23 21 28 28 H 1.48498 * 109.47126 * 240.00528 * 25 23 21 29 29 C 1.46920 * 118.73510 * 306.38462 * 20 19 18 30 30 C 1.38353 * 120.34826 * 90.00005 * 4 3 2 31 31 H 1.08995 * 109.47137 * 60.00022 * 1 2 3 32 32 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46762 * 299.99992 * 1 2 3 34 34 H 1.08995 * 109.47192 * 60.00348 * 3 2 1 35 35 H 1.09001 * 109.47287 * 299.99740 * 3 2 1 36 36 H 1.08001 * 119.45864 * 359.97438 * 5 4 3 37 37 H 1.07994 * 119.72352 * 180.31648 * 7 6 5 38 38 H 0.97002 * 120.00053 * 359.97438 * 11 9 8 39 39 H 1.09003 * 109.46990 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.46980 * 299.99806 * 14 12 11 41 41 H 1.08996 * 109.46855 * 60.00076 * 14 12 11 42 42 H 1.09002 * 109.46172 * 301.33993 * 17 15 12 43 43 H 1.09001 * 109.45454 * 61.30840 * 17 15 12 44 44 H 1.08993 * 109.49549 * 58.59048 * 18 17 15 45 45 H 1.09000 * 109.49530 * 178.65777 * 18 17 15 46 46 H 1.09007 * 109.58281 * 174.42033 * 19 18 17 47 47 H 1.08994 * 109.59287 * 294.85033 * 19 18 17 48 48 H 0.97001 * 119.99944 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.58773 * 293.82319 * 29 20 19 50 50 H 1.08995 * 109.58527 * 173.39681 * 29 20 19 51 51 H 1.07994 * 120.85899 * 359.97438 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2099 1.1307 1.1931 6 7 5.5248 1.0260 1.2093 7 6 6.2314 0.9634 0.0998 8 6 5.6038 1.0195 -1.1451 9 6 6.3977 0.9562 -2.3906 10 8 5.8401 1.0009 -3.4697 11 7 7.7398 0.8489 -2.3295 12 6 8.5266 0.7868 -3.5638 13 1 7.9679 0.2404 -4.3237 14 6 8.8093 2.2060 -4.0604 15 6 9.8499 0.0693 -3.2895 16 1 9.6489 -0.9415 -2.9346 17 6 10.6720 0.0035 -4.5786 18 6 11.9815 -0.7428 -4.3130 19 6 12.7934 0.0178 -3.2599 20 7 11.9572 0.2123 -2.0675 21 6 12.3994 -0.1827 -0.8332 22 1 11.6890 -0.4609 -0.0687 23 6 13.7606 -0.2258 -0.5646 24 7 14.6052 0.4196 -1.3409 25 14 14.3936 -1.1994 0.8985 26 1 13.2500 -1.8291 1.6062 27 1 15.3242 -2.2553 0.4252 28 1 15.1098 -0.2882 1.8270 29 6 10.6377 0.8391 -2.2248 30 6 4.2089 1.1315 -1.1949 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6886 1.8463 0.8900 35 1 1.6886 1.8464 -0.8900 36 1 3.6688 1.1735 2.1268 37 1 7.3062 0.8729 0.1539 38 1 8.1849 0.8135 -1.4684 39 1 9.3943 2.1597 -4.9790 40 1 7.8667 2.7171 -4.2558 41 1 9.3681 2.7523 -3.3005 42 1 10.1034 -0.5224 -5.3456 43 1 10.8934 1.0147 -4.9200 44 1 11.7609 -1.7458 -3.9478 45 1 12.5557 -0.8101 -5.2370 46 1 13.6794 -0.5592 -2.9947 47 1 13.0921 0.9872 -3.6587 48 1 15.5564 0.3898 -1.1530 49 1 10.7606 1.8755 -2.5392 50 1 10.1012 0.8039 -1.2766 51 1 3.6900 1.1723 -2.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025449109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:33 Heat of formation + Delta-G solvation = -29.608820 kcal Electronic energy + Delta-G solvation = -30610.944529 eV Core-core repulsion = 26510.813814 eV Total energy + Delta-G solvation = -4100.130715 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.94840 -39.57307 -38.20171 -37.91007 -35.27301 -33.45345 -33.13260 -32.37616 -30.72105 -30.47685 -28.16323 -27.85460 -25.95285 -25.33770 -25.15582 -23.48895 -22.96065 -22.18562 -20.77601 -20.20126 -18.73754 -17.97693 -17.24978 -16.97419 -16.85670 -16.58527 -15.94069 -15.70108 -15.41517 -15.10635 -14.89200 -14.48703 -14.24508 -13.85764 -13.78913 -13.50815 -13.43868 -13.25011 -13.08759 -12.86815 -12.58259 -12.40900 -12.33936 -12.22210 -11.89346 -11.83138 -11.62442 -11.01375 -10.94984 -10.61678 -10.48210 -10.35120 -10.21114 -10.19150 -10.14820 -10.09205 -9.89665 -9.68506 -9.58027 -9.46806 -9.40966 -8.97880 -8.48082 -6.69024 -5.81037 -3.23428 0.36068 0.82187 2.69529 3.06961 3.33231 3.35944 3.44426 3.46159 3.73804 4.01862 4.33797 4.40576 4.46876 4.55164 4.58368 4.73336 4.82332 4.91901 4.97111 5.00043 5.17688 5.19918 5.25213 5.26231 5.37083 5.40861 5.55077 5.65883 5.68775 5.71670 5.78461 5.83856 5.98307 6.10409 6.19583 6.20795 6.22512 6.31267 6.45686 6.55094 6.59391 6.63794 6.68954 6.75280 6.85073 6.95274 7.38671 7.48054 7.55328 7.65854 7.77380 8.13994 8.42186 9.18665 9.82248 10.38562 11.27099 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.002410 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.926349 B =11617.300666 C =13207.433909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.108 3.892 4 C -0.156 4.156 5 C 0.142 3.858 6 N -0.484 5.484 7 C 0.144 3.856 8 C -0.186 4.186 9 C 0.563 3.437 10 O -0.540 6.540 11 N -0.712 5.712 12 C 0.150 3.850 13 H 0.084 0.916 14 C -0.165 4.165 15 C -0.114 4.114 16 H 0.073 0.927 17 C -0.101 4.101 18 C -0.143 4.143 19 C 0.170 3.830 20 N -0.590 5.590 21 C -0.253 4.253 22 H 0.065 0.935 23 C 0.003 3.997 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.290 1.290 29 C 0.151 3.849 30 C 0.003 3.997 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.402 0.598 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.086 0.914 47 H 0.017 0.983 48 H 0.253 0.747 49 H 0.026 0.974 50 H 0.046 0.954 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.743 2.734 -0.297 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.032 3.968 4 C -0.158 4.158 5 C -0.015 4.015 6 N -0.192 5.192 7 C -0.014 4.014 8 C -0.191 4.191 9 C 0.349 3.651 10 O -0.418 6.418 11 N -0.364 5.364 12 C 0.046 3.954 13 H 0.102 0.898 14 C -0.223 4.223 15 C -0.135 4.135 16 H 0.091 0.909 17 C -0.139 4.139 18 C -0.182 4.182 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.382 4.382 22 H 0.083 0.917 23 C -0.196 4.196 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.217 1.217 29 C 0.024 3.976 30 C -0.023 4.023 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.178 0.822 37 H 0.181 0.819 38 H 0.239 0.761 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.104 0.896 47 H 0.036 0.964 48 H 0.063 0.937 49 H 0.043 0.957 50 H 0.064 0.936 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -23.369 2.579 -0.233 23.512 hybrid contribution 0.025 -0.260 0.369 0.453 sum -23.344 2.319 0.137 23.459 Atomic orbital electron populations 1.22783 0.80578 1.03108 1.00140 1.87989 1.19941 1.27091 1.95444 1.21224 0.88576 0.85446 1.01600 1.20560 0.95854 1.05161 0.94258 1.22925 0.89973 0.91069 0.97557 1.67791 1.07788 1.12708 1.30867 1.23162 1.00624 0.90877 0.86764 1.21074 0.95120 1.07795 0.95130 1.17967 0.82339 0.76616 0.88149 1.90758 1.71084 1.50419 1.29565 1.46150 1.05868 1.73484 1.10888 1.21080 0.91721 0.97012 0.85609 0.89815 1.22264 1.01589 0.96456 1.02026 1.21975 0.92747 1.00159 0.98605 0.90872 1.21433 0.96478 1.00517 0.95431 1.22182 0.96367 0.99925 0.99717 1.20797 0.93551 0.96758 0.84504 1.44023 1.14341 1.68945 1.03963 1.19194 0.90656 1.38014 0.90384 0.91690 1.25027 0.96999 0.99417 0.98170 1.70050 1.02143 1.42243 1.40078 0.86255 0.78754 0.79746 0.82219 1.20220 1.21583 1.21735 1.20968 0.87653 0.94118 0.94815 1.21608 0.92466 0.89383 0.98841 0.93843 0.89369 0.93842 0.91704 0.91850 0.82183 0.81910 0.76119 0.91204 0.92855 0.91574 0.93497 0.92131 0.92789 0.93207 0.89552 0.96442 0.93686 0.95672 0.93572 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.45 10.69 -35.23 -0.38 -3.82 16 3 C 0.11 0.78 6.08 36.01 0.22 1.00 16 4 C -0.16 -1.48 5.52 -104.53 -0.58 -2.05 16 5 C 0.14 1.38 10.85 -17.47 -0.19 1.19 16 6 N -0.48 -5.74 10.35 -12.91 -0.13 -5.87 16 7 C 0.14 1.66 10.71 -17.13 -0.18 1.48 16 8 C -0.19 -2.25 5.89 -104.82 -0.62 -2.87 16 9 C 0.56 7.85 7.75 -12.33 -0.10 7.75 16 10 O -0.54 -8.98 16.08 5.32 0.09 -8.90 16 11 N -0.71 -9.42 4.95 -54.75 -0.27 -9.69 16 12 C 0.15 2.12 2.41 -67.93 -0.16 1.96 16 13 H 0.08 1.25 7.58 -51.93 -0.39 0.85 16 14 C -0.17 -2.24 8.79 37.16 0.33 -1.91 16 15 C -0.11 -1.83 2.33 -90.50 -0.21 -2.05 16 16 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 17 C -0.10 -1.61 4.78 -26.69 -0.13 -1.74 16 18 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 19 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 20 N -0.59 -14.09 2.99 -172.32 -0.52 -14.60 16 21 C -0.25 -6.69 9.59 -15.06 -0.14 -6.84 16 22 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 23 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 24 N -0.90 -25.67 11.19 55.49 0.62 -25.05 16 25 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 29 C 0.15 2.89 5.30 -3.71 -0.02 2.87 16 30 C 0.00 0.04 9.39 -38.87 -0.37 -0.33 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.16 1.65 6.42 -52.49 -0.34 1.31 16 38 H 0.40 4.88 5.05 -40.82 -0.21 4.68 16 39 H 0.07 0.90 6.46 -51.93 -0.34 0.56 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.92 6.32 -51.93 -0.33 0.59 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.95 6.50 -51.93 -0.34 0.61 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.03 0.50 6.18 -51.93 -0.32 0.17 16 50 H 0.05 0.83 6.52 -51.93 -0.34 0.50 16 51 H 0.15 1.55 7.74 -52.49 -0.41 1.15 16 LS Contribution 402.36 15.07 6.06 6.06 Total: -1.00 -32.25 402.36 -8.79 -41.05 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.93 Total: 3.66 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -1.30 Total: 0.83 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.30 Total: -55.22 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.29 Total: -12.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.25 -8.79 -41.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025449109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.437 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds