Wall clock time and date at job start Wed Apr 1 2020 04:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99929 * 2 1 4 4 C 1.50709 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.38356 * 120.34693 * 270.01788 * 4 3 2 6 6 N 1.31920 * 121.07791 * 179.97438 * 5 4 3 7 7 C 1.31693 * 121.88474 * 359.66245 * 6 5 4 8 8 C 1.39526 * 120.55818 * 0.62381 * 7 6 5 9 9 C 1.47844 * 120.55446 * 179.68152 * 8 7 6 10 10 O 1.21548 * 120.00013 * 179.72348 * 9 8 7 11 11 N 1.34776 * 120.00075 * 359.73248 * 9 8 7 12 12 C 1.46499 * 119.99967 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47052 * 324.98681 * 12 11 9 14 14 C 1.52998 * 109.47558 * 84.99390 * 12 11 9 15 15 C 1.53005 * 109.46990 * 204.99697 * 12 11 9 16 16 H 1.09003 * 109.49947 * 59.93170 * 15 12 11 17 17 C 1.53039 * 109.49946 * 179.97438 * 15 12 11 18 18 C 1.53042 * 109.53854 * 181.31517 * 17 15 12 19 19 C 1.53193 * 109.30938 * 298.63405 * 18 17 15 20 20 N 1.46932 * 108.77584 * 54.64007 * 19 18 17 21 21 C 1.36936 * 120.62996 * 126.41090 * 20 19 18 22 22 H 1.08003 * 119.99520 * 207.66974 * 21 20 19 23 23 C 1.38808 * 120.00328 * 27.66380 * 21 20 19 24 24 N 1.31624 * 119.99764 * 17.37522 * 23 21 20 25 25 Si 1.86801 * 120.00244 * 197.36595 * 23 21 20 26 26 H 1.48505 * 109.46926 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47035 * 120.00119 * 25 23 21 28 28 H 1.48498 * 109.47126 * 240.00528 * 25 23 21 29 29 C 1.46920 * 118.73510 * 306.38462 * 20 19 18 30 30 C 1.38353 * 120.34826 * 90.00005 * 4 3 2 31 31 H 1.08995 * 109.47137 * 60.00022 * 1 2 3 32 32 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46762 * 299.99992 * 1 2 3 34 34 H 1.08995 * 109.47192 * 60.00348 * 3 2 1 35 35 H 1.09001 * 109.47287 * 299.99740 * 3 2 1 36 36 H 1.08001 * 119.45864 * 359.97438 * 5 4 3 37 37 H 1.07994 * 119.72352 * 180.31648 * 7 6 5 38 38 H 0.97002 * 120.00053 * 359.97438 * 11 9 8 39 39 H 1.09003 * 109.46990 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.46980 * 299.99806 * 14 12 11 41 41 H 1.08996 * 109.46855 * 60.00076 * 14 12 11 42 42 H 1.09002 * 109.46172 * 301.33993 * 17 15 12 43 43 H 1.09001 * 109.45454 * 61.30840 * 17 15 12 44 44 H 1.08993 * 109.49549 * 58.59048 * 18 17 15 45 45 H 1.09000 * 109.49530 * 178.65777 * 18 17 15 46 46 H 1.09007 * 109.58281 * 174.42033 * 19 18 17 47 47 H 1.08994 * 109.59287 * 294.85033 * 19 18 17 48 48 H 0.97001 * 119.99944 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.58773 * 293.82319 * 29 20 19 50 50 H 1.08995 * 109.58527 * 173.39681 * 29 20 19 51 51 H 1.07994 * 120.85899 * 359.97438 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2099 1.1307 1.1931 6 7 5.5248 1.0260 1.2093 7 6 6.2314 0.9634 0.0998 8 6 5.6038 1.0195 -1.1451 9 6 6.3977 0.9562 -2.3906 10 8 5.8401 1.0009 -3.4697 11 7 7.7398 0.8489 -2.3295 12 6 8.5266 0.7868 -3.5638 13 1 7.9679 0.2404 -4.3237 14 6 8.8093 2.2060 -4.0604 15 6 9.8499 0.0693 -3.2895 16 1 9.6489 -0.9415 -2.9346 17 6 10.6720 0.0035 -4.5786 18 6 11.9815 -0.7428 -4.3130 19 6 12.7934 0.0178 -3.2599 20 7 11.9572 0.2123 -2.0675 21 6 12.3994 -0.1827 -0.8332 22 1 11.6890 -0.4609 -0.0687 23 6 13.7606 -0.2258 -0.5646 24 7 14.6052 0.4196 -1.3409 25 14 14.3936 -1.1994 0.8985 26 1 13.2500 -1.8291 1.6062 27 1 15.3242 -2.2553 0.4252 28 1 15.1098 -0.2882 1.8270 29 6 10.6377 0.8391 -2.2248 30 6 4.2089 1.1315 -1.1949 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6886 1.8463 0.8900 35 1 1.6886 1.8464 -0.8900 36 1 3.6688 1.1735 2.1268 37 1 7.3062 0.8729 0.1539 38 1 8.1849 0.8135 -1.4684 39 1 9.3943 2.1597 -4.9790 40 1 7.8667 2.7171 -4.2558 41 1 9.3681 2.7523 -3.3005 42 1 10.1034 -0.5224 -5.3456 43 1 10.8934 1.0147 -4.9200 44 1 11.7609 -1.7458 -3.9478 45 1 12.5557 -0.8101 -5.2370 46 1 13.6794 -0.5592 -2.9947 47 1 13.0921 0.9872 -3.6587 48 1 15.5564 0.3898 -1.1530 49 1 10.7606 1.8755 -2.5392 50 1 10.1012 0.8039 -1.2766 51 1 3.6900 1.1723 -2.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025449109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:32 Heat of formation + Delta-G solvation = -50.117900 kcal Electronic energy + Delta-G solvation = -30611.833869 eV Core-core repulsion = 26510.813814 eV Total energy + Delta-G solvation = -4101.020055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.86501 -40.65215 -39.40239 -38.68087 -36.72666 -34.80025 -34.07743 -33.51213 -32.31438 -31.92395 -29.50629 -28.41817 -27.20033 -26.51190 -26.17441 -24.71952 -23.93060 -23.68857 -22.19111 -21.32897 -20.15868 -19.02707 -18.54200 -18.09511 -17.66108 -17.38290 -16.87188 -16.79706 -16.44951 -16.23486 -16.08505 -15.84961 -15.65157 -15.20724 -15.03331 -14.77864 -14.62353 -14.24252 -14.09710 -14.04890 -13.89810 -13.66158 -13.33875 -13.29027 -13.03746 -12.91294 -12.77716 -12.68819 -12.36645 -12.25732 -12.05051 -11.92770 -11.71751 -11.50445 -11.40177 -11.15403 -11.04321 -11.00848 -10.72293 -10.50885 -10.49950 -10.33274 -10.07468 -8.63760 -7.84916 -5.29140 -0.48909 0.00515 1.46404 1.49433 1.58767 1.71836 2.02078 2.52300 2.58327 3.04893 3.23370 3.29858 3.57833 3.60782 3.69948 3.73493 3.83254 3.92464 3.99711 4.01999 4.06474 4.28427 4.36060 4.42528 4.46930 4.50510 4.53918 4.57449 4.62938 4.66821 4.70902 4.85650 4.87899 4.89373 4.90787 4.98011 5.03598 5.07271 5.15711 5.21248 5.30625 5.36240 5.41180 5.47355 5.50782 5.60312 5.70362 5.81692 6.17603 6.39865 6.42409 6.72987 7.05994 7.17577 7.89573 8.40644 9.21114 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.002410 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.926349 B =11617.300666 C =13207.433909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.108 3.892 4 C -0.151 4.151 5 C 0.142 3.858 6 N -0.505 5.505 7 C 0.140 3.860 8 C -0.198 4.198 9 C 0.567 3.433 10 O -0.570 6.570 11 N -0.709 5.709 12 C 0.159 3.841 13 H 0.084 0.916 14 C -0.160 4.160 15 C -0.099 4.099 16 H 0.065 0.935 17 C -0.097 4.097 18 C -0.132 4.132 19 C 0.174 3.826 20 N -0.608 5.608 21 C -0.256 4.256 22 H 0.069 0.931 23 C -0.052 4.052 24 N -0.934 5.934 25 Si 0.961 3.039 26 H -0.266 1.266 27 H -0.293 1.293 28 H -0.294 1.294 29 C 0.149 3.851 30 C -0.004 4.004 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.190 0.810 37 H 0.171 0.829 38 H 0.407 0.593 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.050 0.950 47 H -0.003 1.003 48 H 0.248 0.752 49 H 0.024 0.976 50 H 0.053 0.947 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.205 2.606 0.123 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.031 3.969 4 C -0.153 4.153 5 C -0.014 4.014 6 N -0.213 5.213 7 C -0.018 4.018 8 C -0.204 4.204 9 C 0.354 3.646 10 O -0.451 6.451 11 N -0.360 5.360 12 C 0.054 3.946 13 H 0.102 0.898 14 C -0.218 4.218 15 C -0.119 4.119 16 H 0.084 0.916 17 C -0.135 4.135 18 C -0.171 4.171 19 C 0.048 3.952 20 N -0.331 5.331 21 C -0.386 4.386 22 H 0.086 0.914 23 C -0.247 4.247 24 N -0.580 5.580 25 Si 0.790 3.210 26 H -0.190 1.190 27 H -0.220 1.220 28 H -0.221 1.221 29 C 0.024 3.976 30 C -0.030 4.030 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.207 0.793 37 H 0.188 0.812 38 H 0.245 0.755 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.015 0.985 48 H 0.057 0.943 49 H 0.042 0.958 50 H 0.072 0.928 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.864 2.450 0.195 25.980 hybrid contribution 0.691 -0.189 0.265 0.764 sum -25.173 2.261 0.460 25.278 Atomic orbital electron populations 1.22950 0.78950 1.03825 1.01349 1.87934 1.21803 1.28031 1.95722 1.21344 0.86830 0.85282 1.03436 1.20813 0.97302 1.03762 0.93453 1.23444 0.89451 0.89607 0.98910 1.67830 1.08959 1.13583 1.30921 1.23261 1.01093 0.90864 0.86611 1.20943 0.95503 1.09510 0.94403 1.18187 0.82318 0.75735 0.88371 1.90737 1.71577 1.51994 1.30743 1.46100 1.05836 1.73198 1.10885 1.20920 0.90546 0.97129 0.85955 0.89823 1.22211 1.01571 0.95768 1.02212 1.21755 0.93200 0.99347 0.97638 0.91612 1.21428 0.95260 1.00864 0.95984 1.22018 0.97251 0.99015 0.98809 1.20618 0.93278 0.95678 0.85592 1.44278 1.15797 1.69637 1.03431 1.19532 0.90857 1.36920 0.91338 0.91354 1.25734 0.97403 1.00754 1.00828 1.70194 1.01947 1.43985 1.41904 0.85296 0.78155 0.78152 0.79398 1.19025 1.22015 1.22110 1.21112 0.85925 0.94135 0.96425 1.21757 0.92195 0.89421 0.99660 0.92990 0.89015 0.92248 0.89125 0.90783 0.79326 0.81234 0.75514 0.90270 0.92927 0.92174 0.90671 0.91557 0.93361 0.91273 0.93201 0.98502 0.94275 0.95780 0.92835 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.58 10.69 -148.98 -1.59 -8.17 16 3 C 0.11 1.28 6.08 71.24 0.43 1.71 16 4 C -0.15 -2.58 5.52 -19.81 -0.11 -2.69 16 5 C 0.14 2.48 10.85 84.71 0.92 3.40 16 6 N -0.51 -11.31 10.35 -194.76 -2.01 -13.32 16 7 C 0.14 3.12 10.71 85.02 0.91 4.03 16 8 C -0.20 -4.67 5.89 -19.99 -0.12 -4.79 16 9 C 0.57 15.41 7.75 86.79 0.67 16.09 16 10 O -0.57 -18.63 16.08 -3.87 -0.06 -18.70 16 11 N -0.71 -18.07 4.95 -445.41 -2.21 -20.27 16 12 C 0.16 4.25 2.41 44.99 0.11 4.36 16 13 H 0.08 2.33 7.58 -2.39 -0.02 2.31 16 14 C -0.16 -4.08 8.79 71.98 0.63 -3.44 16 15 C -0.10 -3.03 2.33 -10.71 -0.02 -3.06 16 16 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 17 C -0.10 -2.91 4.78 30.62 0.15 -2.77 16 18 C -0.13 -4.75 6.08 30.67 0.19 -4.56 16 19 C 0.17 8.19 5.31 86.36 0.46 8.65 16 20 N -0.61 -29.23 2.99 -699.09 -2.09 -31.32 16 21 C -0.26 -13.65 9.59 84.03 0.81 -12.84 16 22 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 23 C -0.05 -2.86 4.91 84.86 0.42 -2.44 16 24 N -0.93 -54.76 11.19 21.65 0.24 -54.52 16 25 Si 0.96 44.54 29.59 68.60 2.03 46.57 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 28 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 29 C 0.15 5.62 5.30 86.36 0.46 6.08 16 30 C 0.00 -0.08 9.39 22.73 0.21 0.13 16 31 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 35 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 36 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 37 H 0.17 3.34 6.42 -2.91 -0.02 3.32 16 38 H 0.41 9.54 5.05 -92.71 -0.47 9.08 16 39 H 0.08 1.87 6.46 -2.39 -0.02 1.85 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.61 6.32 -2.39 -0.02 1.59 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 1.94 6.50 -2.39 -0.02 1.92 16 44 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.05 2.70 6.04 -2.38 -0.01 2.69 16 47 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 48 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 49 H 0.02 0.93 6.18 -2.39 -0.01 0.92 16 50 H 0.05 1.90 6.52 -2.39 -0.02 1.88 16 51 H 0.15 3.03 7.74 -2.91 -0.02 3.01 16 Total: -1.00 -70.25 402.36 2.13 -68.12 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.47 Total: 22.30 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 7.36 Total: 9.32 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -6.07 Total: -119.44 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -1.65 Total: -26.87 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.25 2.13 -68.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025449109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.997 kcal (2) G-P(sol) polarization free energy of solvation -70.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds