Wall clock time and date at job start Wed Apr 1 2020 04:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47130 * 2 1 4 4 N 1.46506 * 109.47102 * 119.99646 * 2 1 3 5 5 C 1.34773 * 119.99746 * 275.00210 * 4 2 1 6 6 O 1.21590 * 120.00218 * 359.97438 * 5 4 2 7 7 C 1.47515 * 120.00028 * 179.97438 * 5 4 2 8 8 O 1.35183 * 127.15245 * 0.03115 * 7 5 4 9 9 N 1.21473 * 111.55925 * 179.97438 * 8 7 5 10 10 C 1.29077 * 111.67848 * 359.88880 * 9 8 7 11 11 C 1.35244 * 127.15494 * 179.97438 * 7 5 4 12 12 C 1.50110 * 131.33966 * 0.39492 * 11 7 5 13 13 C 1.53568 * 108.02051 * 163.72547 * 12 11 7 14 14 C 1.53015 * 109.80420 * 50.03246 * 13 12 11 15 15 C 1.50651 * 130.33129 * 180.43018 * 10 9 8 16 16 C 1.52997 * 109.47289 * 239.99568 * 2 1 3 17 17 H 1.08996 * 109.50003 * 299.93485 * 16 2 1 18 18 C 1.53039 * 109.49802 * 60.00295 * 16 2 1 19 19 C 1.53048 * 109.53840 * 181.31946 * 18 16 2 20 20 C 1.53198 * 109.30899 * 298.62870 * 19 18 16 21 21 N 1.46924 * 108.77295 * 54.63706 * 20 19 18 22 22 C 1.36938 * 120.62973 * 126.40811 * 21 20 19 23 23 H 1.07999 * 120.00156 * 332.75154 * 22 21 20 24 24 C 1.38818 * 119.99931 * 152.74453 * 22 21 20 25 25 N 1.31615 * 119.99753 * 159.74275 * 24 22 21 26 26 Si 1.86800 * 120.00040 * 339.74507 * 24 22 21 27 27 H 1.48501 * 109.46961 * 94.91353 * 26 24 22 28 28 H 1.48498 * 109.46814 * 214.91267 * 26 24 22 29 29 H 1.48500 * 109.47022 * 334.91187 * 26 24 22 30 30 C 1.46927 * 118.74303 * 306.39125 * 21 20 19 31 31 H 1.09004 * 109.46947 * 60.00578 * 1 2 3 32 32 H 1.09002 * 109.47541 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47734 * 300.00344 * 1 2 3 34 34 H 0.96993 * 119.99968 * 94.99875 * 4 2 1 35 35 H 1.09000 * 109.74993 * 283.36271 * 12 11 7 36 36 H 1.09004 * 109.74675 * 44.09977 * 12 11 7 37 37 H 1.08992 * 109.42049 * 289.93317 * 13 12 11 38 38 H 1.08998 * 109.36111 * 170.09339 * 13 12 11 39 39 H 1.08993 * 109.38066 * 168.09630 * 14 13 12 40 40 H 1.08997 * 109.37717 * 48.42734 * 14 13 12 41 41 H 1.08994 * 109.74027 * 282.78867 * 15 10 9 42 42 H 1.09006 * 109.74385 * 43.49677 * 15 10 9 43 43 H 1.08999 * 109.46084 * 301.33496 * 18 16 2 44 44 H 1.08998 * 109.46294 * 61.30720 * 18 16 2 45 45 H 1.08999 * 109.49633 * 58.57960 * 19 18 16 46 46 H 1.08995 * 109.49476 * 178.65001 * 19 18 16 47 47 H 1.08994 * 109.58423 * 174.42050 * 20 19 18 48 48 H 1.09000 * 109.58571 * 294.85013 * 20 19 18 49 49 H 0.97008 * 120.00234 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.58409 * 293.82206 * 30 21 20 51 51 H 1.09004 * 109.58821 * 173.39940 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1469 -0.0181 2.3571 6 8 1.8581 1.1617 2.4116 7 6 2.6381 -0.7135 3.5618 8 8 2.9988 -2.0122 3.6648 9 7 3.3619 -2.2867 4.7910 10 6 3.3041 -1.2620 5.5737 11 6 2.8221 -0.1841 4.7926 12 6 2.5951 1.2031 5.3193 13 6 2.5803 1.1324 6.8533 14 6 3.8092 0.3672 7.3489 15 6 3.6584 -1.1275 7.0317 16 6 2.0400 -0.7213 -1.2491 17 1 1.6779 -1.7494 -1.2490 18 6 1.5302 -0.0004 -2.4992 19 6 2.0126 -0.7402 -3.7491 20 6 3.5443 -0.7371 -3.7801 21 7 4.0439 -1.2972 -2.5170 22 6 4.9328 -2.3388 -2.5188 23 1 4.9486 -3.0337 -3.3454 24 6 5.8136 -2.5015 -1.4583 25 7 6.3760 -3.6719 -1.2437 26 14 6.2006 -1.0593 -0.3359 27 1 5.3132 -1.1061 0.8539 28 1 7.6179 -1.1380 0.1002 29 1 5.9783 0.2125 -1.0696 30 6 3.5719 -0.7182 -1.2518 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2489 -1.6317 1.1528 35 1 3.4003 1.8591 4.9885 36 1 1.6387 1.5821 4.9588 37 1 1.6769 0.6198 7.1837 38 1 2.5936 2.1428 7.2618 39 1 3.9076 0.4998 8.4263 40 1 4.7002 0.7555 6.8554 41 1 2.8663 -1.5579 7.6443 42 1 4.5990 -1.6411 7.2310 43 1 0.4405 0.0203 -2.4875 44 1 1.9127 1.0202 -2.5112 45 1 1.6512 -1.7682 -3.7256 46 1 1.6293 -0.2400 -4.6385 47 1 3.8941 -1.3463 -4.6135 48 1 3.9054 0.2849 -3.8948 49 1 6.9913 -3.7858 -0.5023 50 1 3.9353 0.3054 -1.1603 51 1 3.9400 -1.3147 -0.4170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025482637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:46 Heat of formation + Delta-G solvation = 28.691714 kcal Electronic energy + Delta-G solvation = -32169.510538 eV Core-core repulsion = 28071.907924 eV Total energy + Delta-G solvation = -4097.602614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.02416 -39.96199 -38.27529 -37.88666 -35.42941 -33.30684 -32.96256 -32.51624 -31.56830 -30.60459 -29.89013 -28.92129 -25.60571 -25.19560 -24.15799 -23.37144 -22.95068 -22.27273 -20.49673 -20.43564 -20.04172 -19.36120 -18.08277 -17.77921 -16.84583 -16.18325 -15.99245 -15.53427 -15.17934 -14.97090 -14.70146 -14.27021 -14.17844 -14.10678 -13.91265 -13.56994 -13.48651 -13.32002 -12.89599 -12.83864 -12.78847 -12.69949 -12.40525 -12.16594 -11.92993 -11.66639 -11.44020 -11.29994 -11.26794 -11.25267 -10.80163 -10.78617 -10.52187 -10.47484 -10.26206 -10.11583 -10.04507 -9.88571 -9.72124 -9.58449 -9.44683 -9.03697 -8.62751 -6.98025 -5.96057 -3.31714 0.78037 1.96093 2.58783 2.98430 3.22854 3.30683 3.48439 3.50185 3.71625 4.27375 4.47716 4.50865 4.53868 4.68608 4.71855 4.82909 4.98003 5.10362 5.12377 5.15384 5.19460 5.26720 5.30454 5.35701 5.43534 5.47820 5.52303 5.56049 5.60803 5.64629 5.69879 5.81279 5.84802 5.89335 5.95535 5.96849 6.00323 6.06480 6.09524 6.24533 6.29236 6.33051 6.42028 6.55451 6.60844 6.69217 6.70333 6.95991 7.36435 7.94055 7.95387 8.07149 8.32003 8.93368 9.71200 10.09202 11.19729 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.003719 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.151391 B = 7527.325834 C = 9001.701047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.090 0.910 4 N -0.704 5.704 5 C 0.608 3.392 6 O -0.517 6.517 7 C -0.078 4.078 8 O 0.106 5.894 9 N -0.330 5.330 10 C 0.012 3.988 11 C -0.124 4.124 12 C -0.048 4.048 13 C -0.121 4.121 14 C -0.120 4.120 15 C -0.039 4.039 16 C -0.114 4.114 17 H 0.081 0.919 18 C -0.102 4.102 19 C -0.135 4.135 20 C 0.146 3.854 21 N -0.605 5.605 22 C -0.260 4.260 23 H 0.087 0.913 24 C 0.026 3.974 25 N -0.906 5.906 26 Si 0.877 3.123 27 H -0.289 1.289 28 H -0.304 1.304 29 H -0.271 1.271 30 C 0.134 3.866 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.411 0.589 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.021 0.979 49 H 0.263 0.737 50 H 0.025 0.975 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 9.401 12.944 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.108 0.892 4 N -0.354 5.354 5 C 0.391 3.609 6 O -0.394 6.394 7 C -0.142 4.142 8 O 0.036 5.964 9 N -0.032 5.032 10 C -0.149 4.149 11 C -0.129 4.129 12 C -0.085 4.085 13 C -0.158 4.158 14 C -0.158 4.158 15 C -0.077 4.077 16 C -0.135 4.135 17 H 0.099 0.901 18 C -0.140 4.140 19 C -0.174 4.174 20 C 0.020 3.980 21 N -0.328 5.328 22 C -0.388 4.388 23 H 0.104 0.896 24 C -0.173 4.173 25 N -0.549 5.549 26 Si 0.708 3.292 27 H -0.217 1.217 28 H -0.232 1.232 29 H -0.196 1.196 30 C 0.008 3.992 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.246 0.754 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.042 0.958 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.585 8.864 13.177 19.658 hybrid contribution 0.410 0.816 0.740 1.175 sum -11.176 9.680 13.917 20.305 Atomic orbital electron populations 1.22207 0.94999 1.02338 1.02404 1.21181 0.93967 0.97525 0.83222 0.89210 1.46058 1.65304 1.14884 1.09128 1.16466 0.77871 0.85616 0.80937 1.90820 1.50805 1.13895 1.83833 1.23489 1.07364 0.85804 0.97542 1.85304 1.61398 1.25013 1.24703 1.73467 1.14898 1.23774 0.91060 1.23417 1.02831 0.89077 0.99532 1.21081 1.01430 0.99043 0.91359 1.20105 1.03888 0.89756 0.94754 1.21673 0.98468 1.01033 0.94629 1.21645 0.99052 0.93432 1.01648 1.20132 1.02836 0.98040 0.86713 1.22026 0.99079 0.99929 0.92442 0.90089 1.21450 0.99369 0.98935 0.94239 1.21998 0.98683 1.00347 0.96359 1.20958 0.91268 0.96494 0.89265 1.44335 1.50298 1.38858 0.99346 1.18932 1.10284 1.01643 1.07984 0.89587 1.25245 0.97430 0.96433 0.98166 1.69819 1.32665 1.21507 1.30888 0.87039 0.76556 0.84981 0.80648 1.21667 1.23237 1.19588 1.21347 0.90630 0.96925 0.90256 0.90979 0.92259 0.92418 0.75364 0.89444 0.88953 0.91440 0.90633 0.90439 0.91170 0.89307 0.89413 0.92367 0.92376 0.91919 0.92593 0.91944 0.96066 0.92754 0.95759 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.13 37.15 0.34 -1.58 16 2 C 0.15 2.12 2.16 -67.93 -0.15 1.97 16 3 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 4 N -0.70 -10.88 4.48 -54.86 -0.25 -11.13 16 5 C 0.61 9.81 7.78 -12.48 -0.10 9.71 16 6 O -0.52 -8.89 15.60 5.29 0.08 -8.81 16 7 C -0.08 -1.22 7.28 -36.87 -0.27 -1.49 16 8 O 0.11 1.76 11.10 13.84 0.15 1.92 16 9 N -0.33 -5.31 12.03 33.15 0.40 -4.91 16 10 C 0.01 0.16 7.21 -82.50 -0.60 -0.43 16 11 C -0.12 -1.72 6.03 -104.70 -0.63 -2.35 16 12 C -0.05 -0.52 5.59 -27.87 -0.16 -0.68 16 13 C -0.12 -0.94 5.87 -26.43 -0.16 -1.10 16 14 C -0.12 -0.91 5.84 -26.44 -0.15 -1.06 16 15 C -0.04 -0.36 6.32 -27.63 -0.17 -0.54 16 16 C -0.11 -1.85 1.97 -90.50 -0.18 -2.03 16 17 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 18 C -0.10 -1.45 4.85 -26.69 -0.13 -1.58 16 19 C -0.13 -2.07 6.08 -26.60 -0.16 -2.23 16 20 C 0.15 2.80 6.52 -3.71 -0.02 2.78 16 21 N -0.61 -14.09 2.77 -172.31 -0.48 -14.57 16 22 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 23 H 0.09 2.53 8.05 -52.49 -0.42 2.11 16 24 C 0.03 0.76 5.24 -17.43 -0.09 0.67 16 25 N -0.91 -27.77 13.97 55.49 0.78 -26.99 16 26 Si 0.88 22.84 24.35 -169.99 -4.14 18.70 16 27 H -0.29 -7.28 6.70 56.52 0.38 -6.90 16 28 H -0.30 -8.15 7.11 56.52 0.40 -7.74 16 29 H -0.27 -6.99 6.46 56.52 0.36 -6.62 16 30 C 0.13 2.84 3.23 -3.71 -0.01 2.83 16 31 H 0.07 0.76 6.40 -51.93 -0.33 0.42 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.41 6.28 8.27 -40.82 -0.34 5.94 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.03 7.78 -51.93 -0.40 0.63 16 37 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.69 6.36 -51.93 -0.33 0.36 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 50 H 0.02 0.54 6.98 -51.93 -0.36 0.18 16 51 H 0.07 1.64 4.02 -51.93 -0.21 1.43 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -32.59 391.29 -8.66 -41.24 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -8.31 Total: 3.13 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.79 Total: -4.46 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.45 Total: -57.61 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: 0.24 Total: -6.89 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.14 Total: 18.70 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.59 -8.66 -41.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025482637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.932 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds