Wall clock time and date at job start Wed Apr 1 2020 04:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47130 * 2 1 4 4 N 1.46506 * 109.47102 * 119.99646 * 2 1 3 5 5 C 1.34773 * 119.99746 * 275.00210 * 4 2 1 6 6 O 1.21590 * 120.00218 * 359.97438 * 5 4 2 7 7 C 1.47515 * 120.00028 * 179.97438 * 5 4 2 8 8 O 1.35183 * 127.15245 * 0.03115 * 7 5 4 9 9 N 1.21473 * 111.55925 * 179.97438 * 8 7 5 10 10 C 1.29077 * 111.67848 * 359.88880 * 9 8 7 11 11 C 1.35244 * 127.15494 * 179.97438 * 7 5 4 12 12 C 1.50110 * 131.33966 * 0.39492 * 11 7 5 13 13 C 1.53568 * 108.02051 * 163.72547 * 12 11 7 14 14 C 1.53015 * 109.80420 * 50.03246 * 13 12 11 15 15 C 1.50651 * 130.33129 * 180.43018 * 10 9 8 16 16 C 1.52997 * 109.47289 * 239.99568 * 2 1 3 17 17 H 1.08996 * 109.50003 * 299.93485 * 16 2 1 18 18 C 1.53039 * 109.49802 * 60.00295 * 16 2 1 19 19 C 1.53048 * 109.53840 * 181.31946 * 18 16 2 20 20 C 1.53198 * 109.30899 * 298.62870 * 19 18 16 21 21 N 1.46924 * 108.77295 * 54.63706 * 20 19 18 22 22 C 1.36938 * 120.62973 * 126.40811 * 21 20 19 23 23 H 1.07999 * 120.00156 * 332.75154 * 22 21 20 24 24 C 1.38818 * 119.99931 * 152.74453 * 22 21 20 25 25 N 1.31615 * 119.99753 * 159.74275 * 24 22 21 26 26 Si 1.86800 * 120.00040 * 339.74507 * 24 22 21 27 27 H 1.48501 * 109.46961 * 94.91353 * 26 24 22 28 28 H 1.48498 * 109.46814 * 214.91267 * 26 24 22 29 29 H 1.48500 * 109.47022 * 334.91187 * 26 24 22 30 30 C 1.46927 * 118.74303 * 306.39125 * 21 20 19 31 31 H 1.09004 * 109.46947 * 60.00578 * 1 2 3 32 32 H 1.09002 * 109.47541 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47734 * 300.00344 * 1 2 3 34 34 H 0.96993 * 119.99968 * 94.99875 * 4 2 1 35 35 H 1.09000 * 109.74993 * 283.36271 * 12 11 7 36 36 H 1.09004 * 109.74675 * 44.09977 * 12 11 7 37 37 H 1.08992 * 109.42049 * 289.93317 * 13 12 11 38 38 H 1.08998 * 109.36111 * 170.09339 * 13 12 11 39 39 H 1.08993 * 109.38066 * 168.09630 * 14 13 12 40 40 H 1.08997 * 109.37717 * 48.42734 * 14 13 12 41 41 H 1.08994 * 109.74027 * 282.78867 * 15 10 9 42 42 H 1.09006 * 109.74385 * 43.49677 * 15 10 9 43 43 H 1.08999 * 109.46084 * 301.33496 * 18 16 2 44 44 H 1.08998 * 109.46294 * 61.30720 * 18 16 2 45 45 H 1.08999 * 109.49633 * 58.57960 * 19 18 16 46 46 H 1.08995 * 109.49476 * 178.65001 * 19 18 16 47 47 H 1.08994 * 109.58423 * 174.42050 * 20 19 18 48 48 H 1.09000 * 109.58571 * 294.85013 * 20 19 18 49 49 H 0.97008 * 120.00234 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.58409 * 293.82206 * 30 21 20 51 51 H 1.09004 * 109.58821 * 173.39940 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1469 -0.0181 2.3571 6 8 1.8581 1.1617 2.4116 7 6 2.6381 -0.7135 3.5618 8 8 2.9988 -2.0122 3.6648 9 7 3.3619 -2.2867 4.7910 10 6 3.3041 -1.2620 5.5737 11 6 2.8221 -0.1841 4.7926 12 6 2.5951 1.2031 5.3193 13 6 2.5803 1.1324 6.8533 14 6 3.8092 0.3672 7.3489 15 6 3.6584 -1.1275 7.0317 16 6 2.0400 -0.7213 -1.2491 17 1 1.6779 -1.7494 -1.2490 18 6 1.5302 -0.0004 -2.4992 19 6 2.0126 -0.7402 -3.7491 20 6 3.5443 -0.7371 -3.7801 21 7 4.0439 -1.2972 -2.5170 22 6 4.9328 -2.3388 -2.5188 23 1 4.9486 -3.0337 -3.3454 24 6 5.8136 -2.5015 -1.4583 25 7 6.3760 -3.6719 -1.2437 26 14 6.2006 -1.0593 -0.3359 27 1 5.3132 -1.1061 0.8539 28 1 7.6179 -1.1380 0.1002 29 1 5.9783 0.2125 -1.0696 30 6 3.5719 -0.7182 -1.2518 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2489 -1.6317 1.1528 35 1 3.4003 1.8591 4.9885 36 1 1.6387 1.5821 4.9588 37 1 1.6769 0.6198 7.1837 38 1 2.5936 2.1428 7.2618 39 1 3.9076 0.4998 8.4263 40 1 4.7002 0.7555 6.8554 41 1 2.8663 -1.5579 7.6443 42 1 4.5990 -1.6411 7.2310 43 1 0.4405 0.0203 -2.4875 44 1 1.9127 1.0202 -2.5112 45 1 1.6512 -1.7682 -3.7256 46 1 1.6293 -0.2400 -4.6385 47 1 3.8941 -1.3463 -4.6135 48 1 3.9054 0.2849 -3.8948 49 1 6.9913 -3.7858 -0.5023 50 1 3.9353 0.3054 -1.1603 51 1 3.9400 -1.3147 -0.4170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025482637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:45 Heat of formation + Delta-G solvation = 8.000825 kcal Electronic energy + Delta-G solvation = -32170.407763 eV Core-core repulsion = 28071.907924 eV Total energy + Delta-G solvation = -4098.499838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -46.14107 -41.22994 -39.67481 -38.77087 -36.84948 -34.92590 -34.16388 -33.47573 -33.09733 -32.21246 -30.90140 -30.15988 -27.16713 -26.37041 -25.32363 -24.38978 -24.27563 -23.78954 -21.77593 -21.62134 -21.03003 -20.65425 -19.24089 -18.92975 -18.82310 -17.49334 -17.39251 -16.92648 -16.23484 -16.09920 -15.93968 -15.70222 -15.48825 -15.16637 -15.06338 -14.93244 -14.74974 -14.61096 -14.38199 -14.12346 -13.89431 -13.72112 -13.64448 -13.46216 -13.33576 -12.92553 -12.75850 -12.69999 -12.56870 -12.13972 -11.97495 -11.94893 -11.93082 -11.71374 -11.61626 -11.55694 -11.47095 -11.27000 -11.21007 -11.08454 -10.71480 -10.69778 -10.25038 -8.94225 -8.21908 -5.51027 -0.40353 0.90278 1.18631 1.30270 1.37188 1.42504 1.75555 2.06142 2.32484 2.78252 2.99217 3.27102 3.30430 3.59662 3.73475 3.75441 3.88024 3.89954 3.91112 3.96952 4.23725 4.27824 4.30402 4.35235 4.35923 4.39938 4.47409 4.48873 4.60378 4.69163 4.76075 4.79169 4.84421 4.85846 4.92560 4.97100 4.98463 5.08491 5.08912 5.10551 5.15740 5.20185 5.23911 5.25653 5.35434 5.38516 5.42729 5.61048 5.84162 6.09228 6.11969 6.71705 6.89240 6.90294 7.60133 8.00891 8.97838 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.003719 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.151391 B = 7527.325834 C = 9001.701047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.082 0.918 4 N -0.706 5.706 5 C 0.608 3.392 6 O -0.531 6.531 7 C -0.103 4.103 8 O 0.078 5.922 9 N -0.359 5.359 10 C 0.019 3.981 11 C -0.121 4.121 12 C -0.050 4.050 13 C -0.115 4.115 14 C -0.116 4.116 15 C -0.043 4.043 16 C -0.102 4.102 17 H 0.076 0.924 18 C -0.099 4.099 19 C -0.125 4.125 20 C 0.136 3.864 21 N -0.620 5.620 22 C -0.241 4.241 23 H 0.059 0.941 24 C -0.025 4.025 25 N -0.951 5.951 26 Si 0.934 3.066 27 H -0.284 1.284 28 H -0.316 1.316 29 H -0.266 1.266 30 C 0.132 3.868 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.409 0.591 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.031 0.969 49 H 0.260 0.740 50 H 0.018 0.982 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.177 11.863 14.182 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.044 3.956 3 H 0.100 0.900 4 N -0.356 5.356 5 C 0.392 3.608 6 O -0.409 6.409 7 C -0.167 4.167 8 O 0.013 5.987 9 N -0.065 5.065 10 C -0.142 4.142 11 C -0.126 4.126 12 C -0.088 4.088 13 C -0.152 4.152 14 C -0.154 4.154 15 C -0.080 4.080 16 C -0.122 4.122 17 H 0.094 0.906 18 C -0.137 4.137 19 C -0.164 4.164 20 C 0.012 3.988 21 N -0.344 5.344 22 C -0.371 4.371 23 H 0.076 0.924 24 C -0.220 4.220 25 N -0.598 5.598 26 Si 0.765 3.235 27 H -0.211 1.211 28 H -0.245 1.245 29 H -0.191 1.191 30 C 0.007 3.993 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.244 0.756 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.128 0.872 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.110 0.890 47 H 0.072 0.928 48 H 0.049 0.951 49 H 0.069 0.931 50 H 0.036 0.964 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.928 11.371 14.360 23.011 hybrid contribution 1.113 0.048 0.296 1.153 sum -12.815 11.419 14.655 22.569 Atomic orbital electron populations 1.22140 0.92293 1.03134 1.03372 1.21229 0.95931 0.96511 0.81956 0.89974 1.46174 1.65168 1.14845 1.09403 1.16519 0.77654 0.85478 0.81176 1.90794 1.51661 1.14288 1.84165 1.23646 1.08747 0.86000 0.98319 1.85262 1.62586 1.25581 1.25320 1.73453 1.16481 1.25213 0.91387 1.24190 1.00790 0.88052 1.01146 1.21605 0.99892 1.00435 0.90653 1.20273 1.03485 0.87775 0.97232 1.21692 0.98924 1.02672 0.91927 1.21683 0.98477 0.91716 1.03525 1.20447 1.03763 0.99827 0.83998 1.21860 0.95119 1.00517 0.94740 0.90555 1.21497 1.01583 0.98545 0.92028 1.21900 0.95162 1.00701 0.98602 1.21215 0.94269 0.96327 0.87025 1.44514 1.49935 1.38273 1.01726 1.18916 1.10095 1.01755 1.06303 0.92371 1.25715 0.98222 0.98016 1.00065 1.69928 1.34432 1.23234 1.32192 0.86116 0.75417 0.82563 0.79430 1.21137 1.24544 1.19061 1.21319 0.94183 0.95470 0.88356 0.88667 0.91547 0.92739 0.75575 0.89575 0.89324 0.90783 0.88264 0.87283 0.91964 0.87242 0.88811 0.88655 0.91665 0.92689 0.89050 0.92783 0.95139 0.93132 0.96414 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.13 71.98 0.66 -2.51 16 2 C 0.15 4.07 2.16 44.99 0.10 4.16 16 3 H 0.08 2.43 7.58 -2.39 -0.02 2.41 16 4 N -0.71 -21.88 4.48 -445.74 -1.99 -23.87 16 5 C 0.61 19.76 7.78 86.69 0.67 20.44 16 6 O -0.53 -18.10 15.60 -4.00 -0.06 -18.16 16 7 C -0.10 -3.32 7.28 24.03 0.17 -3.15 16 8 O 0.08 2.71 11.10 59.54 0.66 3.37 16 9 N -0.36 -11.82 12.03 -50.86 -0.61 -12.43 16 10 C 0.02 0.51 7.21 43.77 0.32 0.83 16 11 C -0.12 -3.30 6.03 -19.92 -0.12 -3.42 16 12 C -0.05 -1.03 5.59 29.85 0.17 -0.86 16 13 C -0.11 -1.45 5.87 30.79 0.18 -1.27 16 14 C -0.12 -1.39 5.84 30.78 0.18 -1.21 16 15 C -0.04 -0.70 6.32 30.01 0.19 -0.51 16 16 C -0.10 -3.14 1.97 -10.72 -0.02 -3.16 16 17 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 18 C -0.10 -2.44 4.85 30.62 0.15 -2.29 16 19 C -0.12 -3.44 6.08 30.68 0.19 -3.25 16 20 C 0.14 5.04 6.52 86.36 0.56 5.60 16 21 N -0.62 -28.88 2.77 -699.07 -1.94 -30.82 16 22 C -0.24 -13.69 10.04 84.03 0.84 -12.85 16 23 H 0.06 3.58 8.05 -2.91 -0.02 3.55 16 24 C -0.03 -1.49 5.24 84.86 0.44 -1.05 16 25 N -0.95 -60.73 13.97 21.65 0.30 -60.43 16 26 Si 0.93 49.05 24.35 68.60 1.67 50.72 16 27 H -0.28 -14.48 6.70 99.48 0.67 -13.81 16 28 H -0.32 -17.05 7.11 99.48 0.71 -16.35 16 29 H -0.27 -13.53 6.46 99.48 0.64 -12.89 16 30 C 0.13 5.52 3.23 86.36 0.28 5.80 16 31 H 0.09 1.56 6.40 -2.38 -0.02 1.54 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.41 12.91 8.27 -92.71 -0.77 12.14 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.09 1.88 7.78 -2.38 -0.02 1.86 16 37 H 0.07 0.87 8.10 -2.39 -0.02 0.85 16 38 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16 41 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.10 1.74 6.36 -2.39 -0.02 1.73 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 48 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 50 H 0.02 0.77 6.98 -2.39 -0.02 0.76 16 51 H 0.04 2.10 4.02 -2.39 -0.01 2.09 16 Total: -1.00 -74.30 391.29 3.06 -71.24 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.07 Total: 19.05 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 4.96 Total: 1.31 kcal Atomic # 7 Polarization: -123.30 SS G_CDS: -4.24 Total: -127.54 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.60 Total: -14.79 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.67 Total: 50.72 kcal Total: -74.30 3.06 -71.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025482637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.244 kcal (2) G-P(sol) polarization free energy of solvation -74.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds