Wall clock time and date at job start Wed Apr 1 2020 04:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46975 * 2 1 4 4 N 1.46504 * 109.46874 * 240.00267 * 2 1 3 5 5 C 1.34774 * 119.99909 * 84.99943 * 4 2 1 6 6 O 1.21586 * 120.00484 * 359.97438 * 5 4 2 7 7 C 1.47515 * 119.99634 * 179.97438 * 5 4 2 8 8 O 1.35184 * 127.15382 * 0.02562 * 7 5 4 9 9 N 1.21478 * 111.55324 * 179.91380 * 8 7 5 10 10 C 1.29072 * 111.68356 * 359.92120 * 9 8 7 11 11 C 1.35246 * 127.15248 * 179.70582 * 7 5 4 12 12 C 1.50121 * 131.33277 * 1.07235 * 11 7 5 13 13 C 1.53575 * 108.07319 * 163.22157 * 12 11 7 14 14 C 1.53001 * 109.80946 * 49.83667 * 13 12 11 15 15 C 1.50654 * 130.33514 * 180.30660 * 10 9 8 16 16 C 1.52993 * 109.47292 * 120.00069 * 2 1 3 17 17 H 1.09002 * 109.52579 * 59.91950 * 16 2 1 18 18 C 1.53044 * 109.49924 * 299.83829 * 16 2 1 19 19 C 1.53066 * 109.66144 * 178.74759 * 18 16 2 20 20 C 1.53202 * 109.29419 * 61.15451 * 19 18 16 21 21 N 1.46921 * 108.89095 * 305.57926 * 20 19 18 22 22 C 1.36936 * 120.62896 * 233.55861 * 21 20 19 23 23 H 1.08007 * 119.99922 * 151.82366 * 22 21 20 24 24 C 1.38810 * 119.99947 * 331.81879 * 22 21 20 25 25 N 1.31613 * 120.00273 * 343.08601 * 24 22 21 26 26 Si 1.86803 * 119.99828 * 163.07892 * 24 22 21 27 27 H 1.48507 * 109.47194 * 60.00090 * 26 24 22 28 28 H 1.48502 * 109.47096 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47239 * 300.00059 * 26 24 22 30 30 C 1.46925 * 118.73959 * 53.53708 * 21 20 19 31 31 H 1.08997 * 109.47418 * 60.00065 * 1 2 3 32 32 H 1.09003 * 109.46975 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47341 * 299.99480 * 1 2 3 34 34 H 0.96999 * 119.99460 * 264.99402 * 4 2 1 35 35 H 1.08997 * 109.89640 * 43.47334 * 12 11 7 36 36 H 1.09000 * 109.55101 * 282.76652 * 12 11 7 37 37 H 1.09004 * 109.41739 * 289.73647 * 13 12 11 38 38 H 1.08994 * 109.41547 * 169.94322 * 13 12 11 39 39 H 1.08996 * 109.38011 * 168.11187 * 14 13 12 40 40 H 1.09005 * 109.37663 * 48.44721 * 14 13 12 41 41 H 1.08999 * 109.74342 * 282.88191 * 15 10 9 42 42 H 1.09002 * 109.74186 * 43.59277 * 15 10 9 43 43 H 1.09002 * 109.46193 * 298.70732 * 18 16 2 44 44 H 1.09008 * 109.45699 * 58.67496 * 18 16 2 45 45 H 1.09002 * 109.39095 * 301.28091 * 19 18 16 46 46 H 1.08998 * 109.62674 * 181.17131 * 19 18 16 47 47 H 1.08997 * 109.58441 * 185.72130 * 20 19 18 48 48 H 1.09001 * 109.58226 * 65.43722 * 20 19 18 49 49 H 0.96997 * 120.00271 * 180.02562 * 25 24 22 50 50 H 1.08996 * 109.59125 * 66.18147 * 30 21 20 51 51 H 1.09006 * 109.58704 * 186.46412 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8574 1.1614 -2.4119 7 6 2.6392 -0.7134 -3.5615 8 8 2.9999 -2.0122 -3.6643 9 7 3.3619 -2.2870 -4.7909 10 6 3.2995 -1.2634 -5.5748 11 6 2.8177 -0.1855 -4.7938 12 6 2.6093 1.2065 -5.3157 13 6 3.3576 1.3317 -6.6510 14 6 2.9933 0.1574 -7.5616 15 6 3.6370 -1.1333 -7.0373 16 6 2.0400 -0.7212 1.2492 17 1 1.6760 -1.7487 1.2508 18 6 1.5336 0.0021 2.4992 19 6 2.0159 -0.7345 3.7513 20 6 3.5477 -0.7379 3.7781 21 7 4.0443 -1.3003 2.5149 22 6 4.9301 -2.3445 2.5167 23 1 4.9508 -3.0366 1.6877 24 6 5.8017 -2.5135 3.5838 25 7 6.0200 -1.5200 4.4189 26 14 6.6646 -4.1512 3.8346 27 1 7.4932 -4.4620 2.6420 28 1 7.5344 -4.0736 5.0357 29 1 5.6517 -5.2203 4.0259 30 6 3.5720 -0.7215 1.2498 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 2.2490 -1.6317 -1.1526 35 1 3.0022 1.9323 -4.6038 36 1 1.5449 1.3819 -5.4721 37 1 4.4319 1.3272 -6.4662 38 1 3.0785 2.2668 -7.1364 39 1 3.3535 0.3570 -8.5708 40 1 1.9100 0.0387 -7.5828 41 1 4.7186 -1.0826 -7.1625 42 1 3.2422 -1.9897 -7.5839 43 1 1.9182 1.0219 2.5096 44 1 0.4438 0.0250 2.4889 45 1 1.6501 -1.7611 3.7307 46 1 1.6376 -0.2309 4.6409 47 1 3.8971 -1.3470 4.6117 48 1 3.9133 0.2825 3.8926 49 1 6.6292 -1.6380 5.1644 50 1 3.9376 0.3011 1.1568 51 1 3.9396 -1.3183 0.4151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025482638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:50 Heat of formation + Delta-G solvation = 22.570462 kcal Electronic energy + Delta-G solvation = -31400.032580 eV Core-core repulsion = 27302.164529 eV Total energy + Delta-G solvation = -4097.868051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.11463 -39.94875 -38.15751 -37.83337 -35.34785 -33.32347 -32.91794 -32.58763 -31.19389 -30.49147 -29.86639 -28.50529 -25.59925 -25.18180 -24.21208 -23.44586 -22.70932 -21.92664 -20.52261 -20.51316 -20.07683 -19.13917 -18.07558 -17.87550 -16.74873 -16.14451 -16.00174 -15.31600 -15.11076 -14.76673 -14.72760 -14.33540 -14.28147 -14.11206 -13.68972 -13.51254 -13.40077 -13.20152 -12.91882 -12.76568 -12.69642 -12.47410 -12.29228 -12.00179 -11.82926 -11.59625 -11.35148 -11.29643 -11.12934 -10.95860 -10.85321 -10.67319 -10.46311 -10.33168 -10.19323 -10.15387 -10.12569 -9.89948 -9.67598 -9.57916 -9.44398 -9.02928 -8.45336 -6.65981 -5.78171 -3.21103 0.70858 1.87730 2.51625 2.94045 3.18444 3.39051 3.44623 3.45868 3.63812 4.21120 4.42296 4.47868 4.48481 4.65095 4.74401 4.89875 4.94973 5.08415 5.13023 5.20589 5.23917 5.34636 5.39224 5.41164 5.47016 5.53086 5.56966 5.59164 5.65106 5.72537 5.76651 5.77826 5.90911 5.94219 5.97326 6.04481 6.08168 6.25747 6.32735 6.37973 6.45248 6.61107 6.69532 6.78950 6.86179 6.96771 7.33461 7.40378 7.68102 7.79819 7.88832 8.01351 8.45693 9.22020 9.85311 10.42073 11.30168 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.002786 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.205414 B =10047.068018 C =11600.685967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.091 0.909 4 N -0.701 5.701 5 C 0.607 3.393 6 O -0.515 6.515 7 C -0.076 4.076 8 O 0.103 5.897 9 N -0.332 5.332 10 C 0.014 3.986 11 C -0.123 4.123 12 C -0.048 4.048 13 C -0.122 4.122 14 C -0.119 4.119 15 C -0.040 4.040 16 C -0.112 4.112 17 H 0.074 0.926 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.169 3.831 21 N -0.590 5.590 22 C -0.254 4.254 23 H 0.065 0.935 24 C 0.003 3.997 25 N -0.902 5.902 26 Si 0.902 3.098 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.284 1.284 30 C 0.154 3.846 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.408 0.592 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.086 0.914 48 H 0.017 0.983 49 H 0.254 0.746 50 H 0.017 0.983 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.611 4.765 -19.641 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.109 0.891 4 N -0.351 5.351 5 C 0.390 3.610 6 O -0.392 6.392 7 C -0.141 4.141 8 O 0.034 5.966 9 N -0.035 5.035 10 C -0.147 4.147 11 C -0.128 4.128 12 C -0.085 4.085 13 C -0.160 4.160 14 C -0.157 4.157 15 C -0.078 4.078 16 C -0.133 4.133 17 H 0.092 0.908 18 C -0.138 4.138 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.313 5.313 22 C -0.384 4.384 23 H 0.082 0.918 24 C -0.195 4.195 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.210 1.210 30 C 0.027 3.973 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.244 0.756 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.104 0.896 48 H 0.035 0.965 49 H 0.064 0.936 50 H 0.035 0.965 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.310 4.349 -19.651 22.614 hybrid contribution 0.510 -0.717 0.211 0.904 sum -9.801 3.632 -19.440 22.072 Atomic orbital electron populations 1.22213 0.95286 1.02172 1.02380 1.21187 0.93739 0.97615 0.83137 0.89143 1.46038 1.65315 1.14651 1.09134 1.16463 0.78046 0.85630 0.80883 1.90838 1.50534 1.14006 1.83774 1.23521 1.07408 0.85644 0.97507 1.85280 1.61553 1.25086 1.24730 1.73451 1.15218 1.23718 0.91111 1.23410 1.02770 0.89068 0.99449 1.21094 1.01432 0.98965 0.91334 1.20106 1.01674 0.89972 0.96762 1.21683 1.00868 0.98574 0.94855 1.21620 1.01250 0.93489 0.99300 1.20128 1.01959 0.99435 0.86294 1.21989 0.99676 0.99339 0.92250 0.90792 1.21443 0.98760 0.99048 0.94588 1.22182 1.00879 0.99382 0.95685 1.20790 0.87457 0.97235 0.90217 1.44013 1.49949 1.37862 0.99433 1.19128 1.11170 1.01967 1.06086 0.91774 1.25035 0.97192 0.97434 0.99870 1.70023 1.37720 1.29365 1.17542 0.86386 0.79185 0.83963 0.77333 1.20875 1.21651 1.21013 1.20872 0.89775 0.96434 0.90184 0.92549 0.92451 0.90966 0.75620 0.88805 0.89544 0.91335 0.90590 0.90457 0.91285 0.89255 0.89483 0.92543 0.93058 0.92768 0.93169 0.89615 0.96503 0.93591 0.96532 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.14 37.16 0.34 -1.56 16 2 C 0.15 2.01 2.16 -67.93 -0.15 1.86 16 3 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 4 N -0.70 -9.25 4.47 -54.85 -0.25 -9.50 16 5 C 0.61 8.50 7.78 -12.48 -0.10 8.40 16 6 O -0.52 -8.15 15.60 5.29 0.08 -8.06 16 7 C -0.08 -1.02 7.28 -36.87 -0.27 -1.28 16 8 O 0.10 1.42 11.10 13.83 0.15 1.57 16 9 N -0.33 -4.55 12.03 33.15 0.40 -4.15 16 10 C 0.01 0.16 7.21 -82.51 -0.60 -0.44 16 11 C -0.12 -1.47 6.03 -104.70 -0.63 -2.10 16 12 C -0.05 -0.46 5.59 -27.86 -0.16 -0.61 16 13 C -0.12 -0.85 5.87 -26.43 -0.16 -1.00 16 14 C -0.12 -0.73 5.83 -26.49 -0.15 -0.88 16 15 C -0.04 -0.31 6.32 -27.67 -0.17 -0.49 16 16 C -0.11 -1.77 1.98 -90.50 -0.18 -1.95 16 17 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.10 -1.58 4.85 -26.67 -0.13 -1.71 16 19 C -0.14 -2.61 6.09 -26.59 -0.16 -2.77 16 20 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 21 N -0.59 -14.51 2.99 -172.32 -0.52 -15.02 16 22 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 23 H 0.06 1.71 7.89 -52.48 -0.41 1.29 16 24 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 25 N -0.90 -26.16 11.20 55.49 0.62 -25.54 16 26 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 C 0.15 3.12 5.55 -3.71 -0.02 3.10 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.79 6.40 -51.93 -0.33 0.45 16 34 H 0.41 5.02 8.26 -40.82 -0.34 4.68 16 35 H 0.09 0.99 7.77 -51.93 -0.40 0.59 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.68 6.37 -51.92 -0.33 0.35 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 50 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.05 1.03 7.44 -51.93 -0.39 0.64 16 LS Contribution 397.92 15.07 6.00 6.00 Total: -1.00 -31.11 397.92 -9.70 -40.81 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.39 Total: 1.77 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.78 Total: -4.53 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.26 Total: -54.21 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: 0.24 Total: -6.49 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.11 -9.70 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025482638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.385 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds