Wall clock time and date at job start Wed Apr 1 2020 04:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46975 * 2 1 4 4 N 1.46504 * 109.46874 * 240.00267 * 2 1 3 5 5 C 1.34774 * 119.99909 * 84.99943 * 4 2 1 6 6 O 1.21586 * 120.00484 * 359.97438 * 5 4 2 7 7 C 1.47515 * 119.99634 * 179.97438 * 5 4 2 8 8 O 1.35184 * 127.15382 * 0.02562 * 7 5 4 9 9 N 1.21478 * 111.55324 * 179.91380 * 8 7 5 10 10 C 1.29072 * 111.68356 * 359.92120 * 9 8 7 11 11 C 1.35246 * 127.15248 * 179.70582 * 7 5 4 12 12 C 1.50121 * 131.33277 * 1.07235 * 11 7 5 13 13 C 1.53575 * 108.07319 * 163.22157 * 12 11 7 14 14 C 1.53001 * 109.80946 * 49.83667 * 13 12 11 15 15 C 1.50654 * 130.33514 * 180.30660 * 10 9 8 16 16 C 1.52993 * 109.47292 * 120.00069 * 2 1 3 17 17 H 1.09002 * 109.52579 * 59.91950 * 16 2 1 18 18 C 1.53044 * 109.49924 * 299.83829 * 16 2 1 19 19 C 1.53066 * 109.66144 * 178.74759 * 18 16 2 20 20 C 1.53202 * 109.29419 * 61.15451 * 19 18 16 21 21 N 1.46921 * 108.89095 * 305.57926 * 20 19 18 22 22 C 1.36936 * 120.62896 * 233.55861 * 21 20 19 23 23 H 1.08007 * 119.99922 * 151.82366 * 22 21 20 24 24 C 1.38810 * 119.99947 * 331.81879 * 22 21 20 25 25 N 1.31613 * 120.00273 * 343.08601 * 24 22 21 26 26 Si 1.86803 * 119.99828 * 163.07892 * 24 22 21 27 27 H 1.48507 * 109.47194 * 60.00090 * 26 24 22 28 28 H 1.48502 * 109.47096 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47239 * 300.00059 * 26 24 22 30 30 C 1.46925 * 118.73959 * 53.53708 * 21 20 19 31 31 H 1.08997 * 109.47418 * 60.00065 * 1 2 3 32 32 H 1.09003 * 109.46975 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47341 * 299.99480 * 1 2 3 34 34 H 0.96999 * 119.99460 * 264.99402 * 4 2 1 35 35 H 1.08997 * 109.89640 * 43.47334 * 12 11 7 36 36 H 1.09000 * 109.55101 * 282.76652 * 12 11 7 37 37 H 1.09004 * 109.41739 * 289.73647 * 13 12 11 38 38 H 1.08994 * 109.41547 * 169.94322 * 13 12 11 39 39 H 1.08996 * 109.38011 * 168.11187 * 14 13 12 40 40 H 1.09005 * 109.37663 * 48.44721 * 14 13 12 41 41 H 1.08999 * 109.74342 * 282.88191 * 15 10 9 42 42 H 1.09002 * 109.74186 * 43.59277 * 15 10 9 43 43 H 1.09002 * 109.46193 * 298.70732 * 18 16 2 44 44 H 1.09008 * 109.45699 * 58.67496 * 18 16 2 45 45 H 1.09002 * 109.39095 * 301.28091 * 19 18 16 46 46 H 1.08998 * 109.62674 * 181.17131 * 19 18 16 47 47 H 1.08997 * 109.58441 * 185.72130 * 20 19 18 48 48 H 1.09001 * 109.58226 * 65.43722 * 20 19 18 49 49 H 0.96997 * 120.00271 * 180.02562 * 25 24 22 50 50 H 1.08996 * 109.59125 * 66.18147 * 30 21 20 51 51 H 1.09006 * 109.58704 * 186.46412 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8574 1.1614 -2.4119 7 6 2.6392 -0.7134 -3.5615 8 8 2.9999 -2.0122 -3.6643 9 7 3.3619 -2.2870 -4.7909 10 6 3.2995 -1.2634 -5.5748 11 6 2.8177 -0.1855 -4.7938 12 6 2.6093 1.2065 -5.3157 13 6 3.3576 1.3317 -6.6510 14 6 2.9933 0.1574 -7.5616 15 6 3.6370 -1.1333 -7.0373 16 6 2.0400 -0.7212 1.2492 17 1 1.6760 -1.7487 1.2508 18 6 1.5336 0.0021 2.4992 19 6 2.0159 -0.7345 3.7513 20 6 3.5477 -0.7379 3.7781 21 7 4.0443 -1.3003 2.5149 22 6 4.9301 -2.3445 2.5167 23 1 4.9508 -3.0366 1.6877 24 6 5.8017 -2.5135 3.5838 25 7 6.0200 -1.5200 4.4189 26 14 6.6646 -4.1512 3.8346 27 1 7.4932 -4.4620 2.6420 28 1 7.5344 -4.0736 5.0357 29 1 5.6517 -5.2203 4.0259 30 6 3.5720 -0.7215 1.2498 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 2.2490 -1.6317 -1.1526 35 1 3.0022 1.9323 -4.6038 36 1 1.5449 1.3819 -5.4721 37 1 4.4319 1.3272 -6.4662 38 1 3.0785 2.2668 -7.1364 39 1 3.3535 0.3570 -8.5708 40 1 1.9100 0.0387 -7.5828 41 1 4.7186 -1.0826 -7.1625 42 1 3.2422 -1.9897 -7.5839 43 1 1.9182 1.0219 2.5096 44 1 0.4438 0.0250 2.4889 45 1 1.6501 -1.7611 3.7307 46 1 1.6376 -0.2309 4.6409 47 1 3.8971 -1.3470 4.6117 48 1 3.9133 0.2825 3.8926 49 1 6.6292 -1.6380 5.1644 50 1 3.9376 0.3011 1.1568 51 1 3.9396 -1.3183 0.4151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025482638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:48 Heat of formation + Delta-G solvation = 4.876288 kcal Electronic energy + Delta-G solvation = -31400.799857 eV Core-core repulsion = 27302.164529 eV Total energy + Delta-G solvation = -4098.635328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.07103 -41.11781 -39.46745 -38.70865 -36.78950 -34.78137 -34.04820 -33.40716 -32.62390 -32.15402 -30.77253 -29.85835 -27.17015 -26.33141 -25.30213 -24.27284 -23.97531 -23.59166 -21.86458 -21.53380 -20.93904 -20.49863 -19.14213 -18.86049 -18.63031 -17.35057 -16.98843 -16.80101 -16.12880 -16.07118 -15.84283 -15.59300 -15.41241 -15.04395 -14.95883 -14.85687 -14.69115 -14.34539 -14.12722 -14.02276 -13.74252 -13.65847 -13.40656 -13.26777 -13.02514 -12.86569 -12.74743 -12.60998 -12.31898 -12.22017 -11.99483 -11.91175 -11.89366 -11.76143 -11.57738 -11.49395 -11.42179 -11.17950 -11.03391 -11.00450 -10.63968 -10.53085 -10.16287 -8.67298 -7.87668 -5.33633 -0.31568 0.96787 1.45728 1.47628 1.48735 1.54447 1.85395 2.14447 2.50049 2.84042 3.26490 3.35854 3.53003 3.68266 3.81269 3.91378 3.93916 3.97432 3.99870 4.06609 4.28683 4.35642 4.37347 4.40864 4.44219 4.50188 4.51985 4.64794 4.77052 4.83108 4.84317 4.88476 4.89253 4.94723 4.97054 5.05061 5.11320 5.12983 5.13517 5.21114 5.28105 5.28634 5.33958 5.39055 5.42969 5.49410 5.57278 5.67274 5.79990 6.23899 6.38840 6.84024 6.98584 7.14861 7.86280 8.37724 9.18127 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.002786 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.205414 B =10047.068018 C =11600.685967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.077 0.923 4 N -0.699 5.699 5 C 0.609 3.391 6 O -0.536 6.536 7 C -0.095 4.095 8 O 0.087 5.913 9 N -0.356 5.356 10 C 0.019 3.981 11 C -0.123 4.123 12 C -0.050 4.050 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.043 4.043 16 C -0.095 4.095 17 H 0.078 0.922 18 C -0.096 4.096 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.608 5.608 22 C -0.263 4.263 23 H 0.066 0.934 24 C -0.050 4.050 25 N -0.935 5.935 26 Si 0.965 3.035 27 H -0.278 1.278 28 H -0.294 1.294 29 H -0.276 1.276 30 C 0.153 3.847 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.413 0.587 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.053 0.947 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.050 0.950 48 H -0.009 1.009 49 H 0.250 0.750 50 H 0.000 1.000 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 4.642 -21.784 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.051 3.949 3 H 0.095 0.905 4 N -0.349 5.349 5 C 0.393 3.607 6 O -0.414 6.414 7 C -0.159 4.159 8 O 0.020 5.980 9 N -0.062 5.062 10 C -0.142 4.142 11 C -0.128 4.128 12 C -0.087 4.087 13 C -0.156 4.156 14 C -0.151 4.151 15 C -0.081 4.081 16 C -0.116 4.116 17 H 0.097 0.903 18 C -0.134 4.134 19 C -0.169 4.169 20 C 0.047 3.953 21 N -0.331 5.331 22 C -0.393 4.393 23 H 0.083 0.917 24 C -0.246 4.246 25 N -0.581 5.581 26 Si 0.793 3.207 27 H -0.203 1.203 28 H -0.220 1.220 29 H -0.202 1.202 30 C 0.028 3.972 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.249 0.751 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.069 0.931 48 H 0.009 0.991 49 H 0.059 0.941 50 H 0.018 0.982 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.021 4.221 -21.794 25.245 hybrid contribution 1.080 -0.631 0.814 1.493 sum -10.941 3.590 -20.980 23.932 Atomic orbital electron populations 1.22151 0.92943 1.03111 1.03016 1.21061 0.95354 0.96390 0.82096 0.90476 1.46023 1.65102 1.14820 1.08922 1.16504 0.77663 0.85362 0.81157 1.90819 1.51603 1.14791 1.84194 1.23512 1.08604 0.85927 0.97877 1.85246 1.62356 1.25265 1.25099 1.73435 1.16482 1.24860 0.91439 1.24079 1.01085 0.88139 1.00937 1.21540 1.00206 1.00150 0.90898 1.20229 1.02458 0.88094 0.97940 1.21703 1.00254 1.00121 0.93549 1.21637 1.01274 0.91943 1.00259 1.20403 1.02910 1.00994 0.83814 1.21760 0.95915 1.00108 0.93795 0.90333 1.21445 1.01056 0.98208 0.92704 1.22012 0.96500 1.00216 0.98217 1.20645 0.91097 0.94739 0.88862 1.44282 1.50017 1.37774 1.01068 1.19471 1.11233 1.02653 1.05986 0.91656 1.25788 0.98365 1.00460 0.99955 1.70184 1.38694 1.31182 1.18066 0.85378 0.78112 0.80229 0.76951 1.20342 1.22045 1.20189 1.20976 0.92979 0.94935 0.88334 0.92738 0.91331 0.89501 0.75120 0.90176 0.88851 0.91641 0.88482 0.87714 0.91175 0.88158 0.88279 0.92815 0.89110 0.92761 0.91041 0.93109 0.99100 0.94137 0.98209 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.14 71.98 0.66 -2.53 16 2 C 0.16 4.04 2.16 44.99 0.10 4.13 16 3 H 0.08 2.26 7.58 -2.39 -0.02 2.25 16 4 N -0.70 -18.20 4.47 -445.73 -1.99 -20.20 16 5 C 0.61 17.13 7.78 86.69 0.67 17.81 16 6 O -0.54 -16.96 15.60 -3.99 -0.06 -17.02 16 7 C -0.10 -2.55 7.28 24.03 0.17 -2.38 16 8 O 0.09 2.43 11.10 59.51 0.66 3.09 16 9 N -0.36 -9.72 12.03 -50.84 -0.61 -10.33 16 10 C 0.02 0.41 7.21 43.77 0.32 0.73 16 11 C -0.12 -2.88 6.03 -19.91 -0.12 -3.00 16 12 C -0.05 -0.90 5.59 29.86 0.17 -0.74 16 13 C -0.12 -1.37 5.87 30.79 0.18 -1.19 16 14 C -0.11 -1.04 5.83 30.75 0.18 -0.86 16 15 C -0.04 -0.58 6.32 29.99 0.19 -0.39 16 16 C -0.10 -2.91 1.98 -10.72 -0.02 -2.93 16 17 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 18 C -0.10 -2.82 4.85 30.63 0.15 -2.67 16 19 C -0.13 -4.64 6.09 30.68 0.19 -4.46 16 20 C 0.17 8.31 5.30 86.37 0.46 8.77 16 21 N -0.61 -30.60 2.99 -699.09 -2.09 -32.69 16 22 C -0.26 -14.60 9.58 84.03 0.81 -13.80 16 23 H 0.07 3.53 7.89 -2.91 -0.02 3.50 16 24 C -0.05 -2.84 4.92 84.86 0.42 -2.43 16 25 N -0.94 -56.16 11.20 21.65 0.24 -55.92 16 26 Si 0.97 45.41 29.59 68.60 2.03 47.44 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 30 C 0.15 6.31 5.55 86.36 0.48 6.79 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.56 6.40 -2.39 -0.02 1.54 16 34 H 0.41 10.08 8.26 -92.71 -0.77 9.31 16 35 H 0.08 1.68 7.77 -2.39 -0.02 1.66 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 0.81 8.11 -2.39 -0.02 0.79 16 38 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.07 0.66 8.10 -2.38 -0.02 0.64 16 41 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.09 2.03 6.37 -2.38 -0.02 2.02 16 45 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 48 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 49 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 50 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 51 H 0.05 1.97 7.44 -2.38 -0.02 1.95 16 Total: -1.00 -69.95 397.92 3.33 -66.61 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.17 Total: 18.15 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 4.99 Total: 0.87 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -4.46 Total: -119.14 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.60 Total: -13.94 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -69.95 3.33 -66.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025482638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.490 kcal (2) G-P(sol) polarization free energy of solvation -69.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds