Wall clock time and date at job start Wed Apr 1 2020 04:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47395 * 2 1 4 4 N 1.46501 * 109.46947 * 120.00146 * 2 1 3 5 5 C 1.34775 * 120.00215 * 274.99705 * 4 2 1 6 6 O 1.21496 * 119.99486 * 0.02562 * 5 4 2 7 7 C 1.48328 * 120.00298 * 179.97438 * 5 4 2 8 8 N 1.31494 * 127.15305 * 359.68840 * 7 5 4 9 9 O 1.21434 * 111.52345 * 179.80012 * 8 7 5 10 10 C 1.33189 * 111.57162 * 0.43424 * 9 8 7 11 11 C 1.35380 * 106.62991 * 359.78546 * 10 9 8 12 12 C 1.50066 * 124.93244 * 179.82707 * 11 10 9 13 13 C 1.53549 * 108.23420 * 343.87890 * 12 11 10 14 14 C 1.53102 * 109.51045 * 49.19995 * 13 12 11 15 15 C 1.50595 * 129.60792 * 179.81330 * 10 9 8 16 16 C 1.52999 * 109.47048 * 240.00064 * 2 1 3 17 17 H 1.09005 * 109.49994 * 184.93690 * 16 2 1 18 18 C 1.53031 * 109.50175 * 64.83809 * 16 2 1 19 19 C 1.53034 * 109.54355 * 178.68366 * 18 16 2 20 20 C 1.53191 * 109.31408 * 61.36519 * 19 18 16 21 21 N 1.46921 * 108.77407 * 305.36729 * 20 19 18 22 22 C 1.36936 * 120.63293 * 233.58036 * 21 20 19 23 23 H 1.08001 * 119.99858 * 151.84170 * 22 21 20 24 24 C 1.38815 * 119.99936 * 331.84974 * 22 21 20 25 25 N 1.31617 * 119.99760 * 343.07184 * 24 22 21 26 26 Si 1.86807 * 119.99693 * 163.06773 * 24 22 21 27 27 H 1.48502 * 109.46807 * 60.00382 * 26 24 22 28 28 H 1.48504 * 109.46614 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47102 * 300.00081 * 26 24 22 30 30 C 1.46930 * 118.73985 * 53.60897 * 21 20 19 31 31 H 1.09002 * 109.47299 * 59.99794 * 1 2 3 32 32 H 1.08998 * 109.47576 * 300.00016 * 1 2 3 33 33 H 1.09002 * 109.47566 * 180.02562 * 1 2 3 34 34 H 0.97006 * 120.00385 * 94.99689 * 4 2 1 35 35 H 1.08992 * 109.71560 * 103.56604 * 12 11 10 36 36 H 1.09001 * 109.70783 * 224.15783 * 12 11 10 37 37 H 1.09005 * 109.46244 * 169.21728 * 13 12 11 38 38 H 1.09005 * 109.46623 * 289.18720 * 13 12 11 39 39 H 1.08996 * 109.43240 * 50.23611 * 14 13 12 40 40 H 1.09002 * 109.42715 * 170.07974 * 14 13 12 41 41 H 1.09005 * 109.69045 * 43.53536 * 15 10 9 42 42 H 1.09004 * 109.73346 * 282.96743 * 15 10 9 43 43 H 1.09002 * 109.46230 * 298.70630 * 18 16 2 44 44 H 1.09009 * 109.45766 * 58.66035 * 18 16 2 45 45 H 1.09003 * 109.49763 * 301.41606 * 19 18 16 46 46 H 1.09001 * 109.52954 * 181.33896 * 19 18 16 47 47 H 1.08998 * 109.58810 * 185.57977 * 20 19 18 48 48 H 1.08999 * 109.70077 * 65.22392 * 20 19 18 49 49 H 0.97005 * 119.99660 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.58664 * 186.60188 * 30 21 20 51 51 H 1.09003 * 109.58818 * 66.17587 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1470 -0.0184 2.3572 6 8 1.8577 1.1604 2.4118 7 6 2.6408 -0.7177 3.5684 8 7 2.9858 -1.9826 3.6700 9 8 3.3537 -2.2551 4.7947 10 6 3.2920 -1.1962 5.6001 11 6 2.8322 -0.1662 4.8515 12 6 2.6023 1.2280 5.3569 13 6 2.5787 1.1849 6.8916 14 6 3.7971 0.4097 7.4001 15 6 3.6432 -1.0784 7.0598 16 6 2.0399 -0.7212 -1.2492 17 1 3.1264 -0.7987 -1.2066 18 6 1.6320 0.0665 -2.4962 19 6 2.1697 -0.6367 -3.7446 20 6 1.5607 -2.0392 -3.8380 21 7 1.8247 -2.7541 -2.5819 22 6 2.4273 -3.9837 -2.5922 23 1 3.0180 -4.3027 -1.7462 24 6 2.2790 -4.8201 -3.6901 25 7 1.3170 -4.5989 -4.5607 26 14 3.4451 -6.2594 -3.9319 27 1 3.3485 -7.1757 -2.7673 28 1 3.0764 -6.9924 -5.1697 29 1 4.8365 -5.7546 -4.0507 30 6 1.4294 -2.1248 -1.3144 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 2.2489 -1.6319 1.1527 35 1 3.4088 1.8790 5.0198 36 1 1.6484 1.6014 4.9844 37 1 2.6052 2.2015 7.2839 38 1 1.6673 0.6899 7.2272 39 1 4.6982 0.7987 6.9260 40 1 3.8770 0.5280 8.4808 41 1 4.5810 -1.5988 7.2551 42 1 2.8486 -1.5137 7.6659 43 1 0.5447 0.1223 -2.5509 44 1 2.0448 1.0738 -2.4406 45 1 3.2549 -0.7150 -3.6790 46 1 1.8993 -0.0628 -4.6310 47 1 2.0144 -2.5800 -4.6685 48 1 0.4849 -1.9629 -3.9959 49 1 1.2132 -5.1836 -5.3277 50 1 1.7965 -2.7221 -0.4798 51 1 0.3428 -2.0533 -1.2652 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025541291.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:56 Heat of formation + Delta-G solvation = 25.823241 kcal Electronic energy + Delta-G solvation = -31275.933909 eV Core-core repulsion = 27178.206909 eV Total energy + Delta-G solvation = -4097.727000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.27225 -39.91651 -38.19055 -37.84973 -35.23920 -34.12831 -33.00276 -31.27870 -31.19013 -30.45062 -30.35433 -28.12078 -25.52325 -25.29747 -24.51787 -23.32263 -23.05312 -22.16184 -20.84385 -20.38032 -19.66167 -18.68393 -18.02321 -17.76375 -16.85103 -16.52497 -15.83165 -15.41388 -15.00101 -14.88591 -14.42955 -14.37103 -14.29486 -14.14084 -13.82672 -13.57763 -13.48542 -13.44146 -13.09293 -12.73424 -12.55192 -12.37492 -12.27586 -11.82660 -11.67299 -11.63224 -11.40998 -11.35263 -11.06474 -10.98864 -10.91597 -10.57653 -10.50301 -10.40410 -10.27552 -10.19355 -10.05106 -9.86357 -9.61785 -9.40026 -9.34006 -9.00595 -8.45296 -6.65625 -5.78574 -3.21236 0.97069 1.47410 2.63402 2.97776 3.12199 3.38843 3.44271 3.45923 3.83613 4.21720 4.33346 4.40560 4.48958 4.63222 4.70547 4.83858 5.00890 5.02789 5.08664 5.19979 5.23104 5.34952 5.39060 5.41066 5.41894 5.53094 5.56668 5.59915 5.67349 5.69820 5.70091 5.83910 5.86548 5.96899 6.00168 6.10490 6.21445 6.23778 6.32440 6.47113 6.57007 6.60148 6.70230 6.77767 6.86387 6.97750 7.40070 7.43554 7.67699 7.79605 7.85022 8.09796 8.45287 9.21616 9.84793 10.41586 11.29703 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014488 B = 0.002582 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.188628 B =10840.861954 C =12411.178137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.085 0.915 4 N -0.703 5.703 5 C 0.599 3.401 6 O -0.527 6.527 7 C -0.017 4.017 8 N -0.331 5.331 9 O 0.129 5.871 10 C -0.042 4.042 11 C -0.153 4.153 12 C -0.044 4.044 13 C -0.124 4.124 14 C -0.119 4.119 15 C -0.035 4.035 16 C -0.113 4.113 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.590 5.590 22 C -0.254 4.254 23 H 0.064 0.936 24 C 0.003 3.997 25 N -0.902 5.902 26 Si 0.902 3.098 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.284 1.284 30 C 0.151 3.849 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.409 0.591 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.086 0.914 48 H 0.018 0.982 49 H 0.254 0.746 50 H 0.047 0.953 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 12.073 22.397 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.103 0.897 4 N -0.354 5.354 5 C 0.382 3.618 6 O -0.402 6.402 7 C -0.175 4.175 8 N -0.033 5.033 9 O 0.056 5.944 10 C -0.106 4.106 11 C -0.158 4.158 12 C -0.082 4.082 13 C -0.161 4.161 14 C -0.156 4.156 15 C -0.073 4.073 16 C -0.134 4.134 17 H 0.091 0.909 18 C -0.138 4.138 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.384 4.384 23 H 0.082 0.918 24 C -0.195 4.195 25 N -0.546 5.546 26 Si 0.732 3.268 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.210 1.210 30 C 0.024 3.976 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.245 0.755 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.104 0.896 48 H 0.036 0.964 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.523 11.805 21.313 24.494 hybrid contribution 0.621 -0.717 -0.002 0.949 sum 3.145 11.088 21.311 24.228 Atomic orbital electron populations 1.22267 0.95095 1.02934 1.02042 1.21139 0.94407 0.96756 0.83159 0.89704 1.46112 1.65328 1.14804 1.09150 1.16842 0.77840 0.85780 0.81335 1.90760 1.50526 1.14626 1.84308 1.23099 1.06318 0.91107 0.96974 1.74637 1.13722 1.16032 0.98920 1.84706 1.60959 1.34540 1.14239 1.24140 1.03532 0.86206 0.96702 1.20648 1.04912 0.99029 0.91223 1.19994 1.03796 0.89904 0.94465 1.21724 0.98442 1.01110 0.94855 1.21654 0.99327 0.92883 1.01782 1.20261 1.03398 0.98632 0.84981 1.21968 1.00997 0.98134 0.92330 0.90916 1.21414 1.00545 0.97183 0.94618 1.22178 1.00621 0.99607 0.95744 1.20788 0.96623 0.87999 0.90197 1.44008 1.69756 1.17625 0.99864 1.19128 1.23328 0.92115 1.03800 0.91838 1.25033 0.97367 0.97635 0.99490 1.70027 1.30138 1.39612 1.14843 0.86381 0.80963 0.82258 0.77248 1.20857 1.21623 1.21041 1.21002 0.96177 0.90305 0.90125 0.91096 0.92837 0.91460 0.75489 0.89896 0.89228 0.90592 0.91335 0.90990 0.90040 0.88819 0.88687 0.92169 0.93490 0.92806 0.93166 0.89605 0.96412 0.93592 0.93469 0.95607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 8.76 37.15 0.33 -2.06 16 2 C 0.15 2.27 2.35 -67.93 -0.16 2.11 16 3 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.70 -10.70 5.01 -54.60 -0.27 -10.97 16 5 C 0.60 9.30 7.81 -12.11 -0.09 9.21 16 6 O -0.53 -8.95 15.75 5.37 0.08 -8.87 16 7 C -0.02 -0.24 7.19 -82.83 -0.60 -0.83 16 8 N -0.33 -4.73 11.89 33.29 0.40 -4.34 16 9 O 0.13 1.56 11.18 19.19 0.21 1.78 16 10 C -0.04 -0.41 7.38 -35.38 -0.26 -0.67 16 11 C -0.15 -1.77 6.04 -104.91 -0.63 -2.40 16 12 C -0.04 -0.41 5.66 -27.90 -0.16 -0.57 16 13 C -0.12 -0.73 5.92 -26.39 -0.16 -0.89 16 14 C -0.12 -0.55 5.88 -26.46 -0.16 -0.71 16 15 C -0.03 -0.19 6.31 -27.71 -0.17 -0.36 16 16 C -0.11 -1.94 2.27 -90.50 -0.21 -2.15 16 17 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 18 C -0.10 -1.66 4.89 -26.70 -0.13 -1.79 16 19 C -0.14 -2.71 6.08 -26.61 -0.16 -2.88 16 20 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 21 N -0.59 -14.69 2.99 -172.32 -0.52 -15.21 16 22 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 23 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 24 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 25 N -0.90 -26.22 11.20 55.49 0.62 -25.60 16 26 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 30 C 0.15 3.08 5.26 -3.71 -0.02 3.06 16 31 H 0.07 0.96 6.59 -51.93 -0.34 0.62 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.02 6.23 -51.93 -0.32 0.69 16 34 H 0.41 6.29 7.04 -40.82 -0.29 6.00 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.94 7.83 -51.93 -0.41 0.53 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 39 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.98 6.63 -51.93 -0.34 0.64 16 44 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.05 0.96 6.75 -51.93 -0.35 0.61 16 51 H 0.03 0.54 6.06 -51.93 -0.31 0.23 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -31.56 393.30 -9.53 -41.08 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -8.12 Total: 3.38 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.83 Total: -4.02 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.23 Total: -56.11 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.30 Total: -7.09 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.56 -9.53 -41.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025541291.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.908 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds