Wall clock time and date at job start Wed Apr 1 2020 04:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47395 * 2 1 4 4 N 1.46501 * 109.46947 * 120.00146 * 2 1 3 5 5 C 1.34775 * 120.00215 * 274.99705 * 4 2 1 6 6 O 1.21496 * 119.99486 * 0.02562 * 5 4 2 7 7 C 1.48328 * 120.00298 * 179.97438 * 5 4 2 8 8 N 1.31494 * 127.15305 * 359.68840 * 7 5 4 9 9 O 1.21434 * 111.52345 * 179.80012 * 8 7 5 10 10 C 1.33189 * 111.57162 * 0.43424 * 9 8 7 11 11 C 1.35380 * 106.62991 * 359.78546 * 10 9 8 12 12 C 1.50066 * 124.93244 * 179.82707 * 11 10 9 13 13 C 1.53549 * 108.23420 * 343.87890 * 12 11 10 14 14 C 1.53102 * 109.51045 * 49.19995 * 13 12 11 15 15 C 1.50595 * 129.60792 * 179.81330 * 10 9 8 16 16 C 1.52999 * 109.47048 * 240.00064 * 2 1 3 17 17 H 1.09005 * 109.49994 * 184.93690 * 16 2 1 18 18 C 1.53031 * 109.50175 * 64.83809 * 16 2 1 19 19 C 1.53034 * 109.54355 * 178.68366 * 18 16 2 20 20 C 1.53191 * 109.31408 * 61.36519 * 19 18 16 21 21 N 1.46921 * 108.77407 * 305.36729 * 20 19 18 22 22 C 1.36936 * 120.63293 * 233.58036 * 21 20 19 23 23 H 1.08001 * 119.99858 * 151.84170 * 22 21 20 24 24 C 1.38815 * 119.99936 * 331.84974 * 22 21 20 25 25 N 1.31617 * 119.99760 * 343.07184 * 24 22 21 26 26 Si 1.86807 * 119.99693 * 163.06773 * 24 22 21 27 27 H 1.48502 * 109.46807 * 60.00382 * 26 24 22 28 28 H 1.48504 * 109.46614 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47102 * 300.00081 * 26 24 22 30 30 C 1.46930 * 118.73985 * 53.60897 * 21 20 19 31 31 H 1.09002 * 109.47299 * 59.99794 * 1 2 3 32 32 H 1.08998 * 109.47576 * 300.00016 * 1 2 3 33 33 H 1.09002 * 109.47566 * 180.02562 * 1 2 3 34 34 H 0.97006 * 120.00385 * 94.99689 * 4 2 1 35 35 H 1.08992 * 109.71560 * 103.56604 * 12 11 10 36 36 H 1.09001 * 109.70783 * 224.15783 * 12 11 10 37 37 H 1.09005 * 109.46244 * 169.21728 * 13 12 11 38 38 H 1.09005 * 109.46623 * 289.18720 * 13 12 11 39 39 H 1.08996 * 109.43240 * 50.23611 * 14 13 12 40 40 H 1.09002 * 109.42715 * 170.07974 * 14 13 12 41 41 H 1.09005 * 109.69045 * 43.53536 * 15 10 9 42 42 H 1.09004 * 109.73346 * 282.96743 * 15 10 9 43 43 H 1.09002 * 109.46230 * 298.70630 * 18 16 2 44 44 H 1.09009 * 109.45766 * 58.66035 * 18 16 2 45 45 H 1.09003 * 109.49763 * 301.41606 * 19 18 16 46 46 H 1.09001 * 109.52954 * 181.33896 * 19 18 16 47 47 H 1.08998 * 109.58810 * 185.57977 * 20 19 18 48 48 H 1.08999 * 109.70077 * 65.22392 * 20 19 18 49 49 H 0.97005 * 119.99660 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.58664 * 186.60188 * 30 21 20 51 51 H 1.09003 * 109.58818 * 66.17587 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1470 -0.0184 2.3572 6 8 1.8577 1.1604 2.4118 7 6 2.6408 -0.7177 3.5684 8 7 2.9858 -1.9826 3.6700 9 8 3.3537 -2.2551 4.7947 10 6 3.2920 -1.1962 5.6001 11 6 2.8322 -0.1662 4.8515 12 6 2.6023 1.2280 5.3569 13 6 2.5787 1.1849 6.8916 14 6 3.7971 0.4097 7.4001 15 6 3.6432 -1.0784 7.0598 16 6 2.0399 -0.7212 -1.2492 17 1 3.1264 -0.7987 -1.2066 18 6 1.6320 0.0665 -2.4962 19 6 2.1697 -0.6367 -3.7446 20 6 1.5607 -2.0392 -3.8380 21 7 1.8247 -2.7541 -2.5819 22 6 2.4273 -3.9837 -2.5922 23 1 3.0180 -4.3027 -1.7462 24 6 2.2790 -4.8201 -3.6901 25 7 1.3170 -4.5989 -4.5607 26 14 3.4451 -6.2594 -3.9319 27 1 3.3485 -7.1757 -2.7673 28 1 3.0764 -6.9924 -5.1697 29 1 4.8365 -5.7546 -4.0507 30 6 1.4294 -2.1248 -1.3144 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 2.2489 -1.6319 1.1527 35 1 3.4088 1.8790 5.0198 36 1 1.6484 1.6014 4.9844 37 1 2.6052 2.2015 7.2839 38 1 1.6673 0.6899 7.2272 39 1 4.6982 0.7987 6.9260 40 1 3.8770 0.5280 8.4808 41 1 4.5810 -1.5988 7.2551 42 1 2.8486 -1.5137 7.6659 43 1 0.5447 0.1223 -2.5509 44 1 2.0448 1.0738 -2.4406 45 1 3.2549 -0.7150 -3.6790 46 1 1.8993 -0.0628 -4.6310 47 1 2.0144 -2.5800 -4.6685 48 1 0.4849 -1.9629 -3.9959 49 1 1.2132 -5.1836 -5.3277 50 1 1.7965 -2.7221 -0.4798 51 1 0.3428 -2.0533 -1.2652 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025541291.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:55 Heat of formation + Delta-G solvation = 7.624477 kcal Electronic energy + Delta-G solvation = -31276.723067 eV Core-core repulsion = 27178.206909 eV Total energy + Delta-G solvation = -4098.516158 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.22868 -41.19552 -39.58405 -38.57843 -36.78191 -35.14055 -34.65527 -32.58490 -32.28933 -31.99419 -31.13731 -29.57550 -27.26163 -26.59436 -25.34577 -24.58232 -23.89777 -23.73902 -22.20932 -21.55684 -20.57185 -20.15361 -19.00965 -18.81354 -18.52810 -17.74217 -17.09199 -16.86823 -16.26653 -16.06153 -15.84888 -15.71465 -15.30298 -15.07550 -14.85012 -14.81279 -14.73012 -14.31752 -14.20112 -14.12678 -14.00995 -13.75836 -13.37186 -13.25632 -13.08595 -12.80056 -12.74919 -12.49422 -12.35076 -12.12175 -11.99841 -11.91832 -11.86323 -11.77452 -11.65072 -11.54863 -11.40386 -11.33233 -11.18523 -11.10098 -10.54482 -10.27456 -10.13429 -8.67982 -7.89507 -5.34898 -0.03237 0.60032 1.43990 1.46009 1.52921 1.74092 1.96093 1.96800 2.48450 2.81879 3.24612 3.44329 3.54183 3.63857 3.83877 3.92291 3.93277 3.98511 4.00578 4.08161 4.23016 4.30266 4.33176 4.38057 4.42078 4.49122 4.58286 4.59471 4.63554 4.79411 4.81365 4.88610 4.89320 4.93607 4.99748 5.01512 5.08808 5.14056 5.18033 5.19458 5.24159 5.30133 5.33628 5.35354 5.43618 5.44424 5.53976 5.64673 5.77233 6.20447 6.37005 6.80732 6.98175 7.13113 7.84279 8.35598 9.16198 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014488 B = 0.002582 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.188628 B =10840.861954 C =12411.178137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 H 0.091 0.909 4 N -0.704 5.704 5 C 0.599 3.401 6 O -0.545 6.545 7 C -0.042 4.042 8 N -0.359 5.359 9 O 0.130 5.870 10 C -0.024 4.024 11 C -0.171 4.171 12 C -0.044 4.044 13 C -0.119 4.119 14 C -0.115 4.115 15 C -0.036 4.036 16 C -0.098 4.098 17 H 0.062 0.938 18 C -0.096 4.096 19 C -0.131 4.131 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.265 4.265 23 H 0.062 0.938 24 C -0.048 4.048 25 N -0.932 5.932 26 Si 0.964 3.036 27 H -0.276 1.276 28 H -0.292 1.292 29 H -0.279 1.279 30 C 0.151 3.849 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.407 0.593 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.073 0.927 47 H 0.051 0.949 48 H -0.001 1.001 49 H 0.250 0.750 50 H 0.042 0.958 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 13.202 25.010 28.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.109 0.891 4 N -0.354 5.354 5 C 0.383 3.617 6 O -0.422 6.422 7 C -0.199 4.199 8 N -0.060 5.060 9 O 0.056 5.944 10 C -0.089 4.089 11 C -0.176 4.176 12 C -0.082 4.082 13 C -0.157 4.157 14 C -0.153 4.153 15 C -0.073 4.073 16 C -0.119 4.119 17 H 0.080 0.920 18 C -0.133 4.133 19 C -0.170 4.170 20 C 0.048 3.952 21 N -0.332 5.332 22 C -0.395 4.395 23 H 0.079 0.921 24 C -0.244 4.244 25 N -0.578 5.578 26 Si 0.792 3.208 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.205 1.205 30 C 0.026 3.974 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.243 0.757 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.017 0.983 49 H 0.059 0.941 50 H 0.060 0.940 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.453 12.954 23.940 27.438 hybrid contribution 0.320 -1.072 -0.730 1.336 sum 3.773 11.882 23.210 26.346 Atomic orbital electron populations 1.22211 0.94320 1.02421 1.02755 1.21035 0.94855 0.96516 0.82214 0.89120 1.46131 1.65349 1.14665 1.09299 1.17021 0.77362 0.85617 0.81681 1.90734 1.51425 1.15313 1.84703 1.23132 1.07571 0.91640 0.97536 1.74619 1.14948 1.16293 1.00170 1.84664 1.60398 1.35367 1.13977 1.24995 1.01165 0.84652 0.98062 1.20993 1.05649 1.00564 0.90436 1.20052 1.02547 0.88487 0.97087 1.21734 0.99392 1.02545 0.91995 1.21697 0.98284 0.91795 1.03507 1.20630 1.05137 0.99758 0.81783 1.21743 1.00019 0.96211 0.93893 0.91950 1.21409 1.01107 0.98177 0.92653 1.22016 0.99828 0.96973 0.98219 1.20634 0.95400 0.90261 0.88870 1.44263 1.70005 1.17421 1.01510 1.19426 1.23204 0.93165 1.03753 0.92059 1.25763 0.98839 1.00306 0.99473 1.70175 1.31692 1.40671 1.15243 0.85390 0.79026 0.79347 0.76993 1.20205 1.21798 1.20548 1.21088 0.96230 0.91957 0.88138 0.89763 0.92718 0.92525 0.75720 0.90307 0.91091 0.88993 0.91033 0.91367 0.87029 0.86685 0.86496 0.91416 0.90332 0.93448 0.90848 0.93100 0.98328 0.94062 0.93979 0.95702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 8.76 71.98 0.63 -3.81 16 2 C 0.16 4.66 2.35 44.99 0.11 4.77 16 3 H 0.09 2.65 7.58 -2.39 -0.02 2.64 16 4 N -0.70 -21.60 5.01 -444.97 -2.23 -23.83 16 5 C 0.60 18.86 7.81 86.93 0.68 19.54 16 6 O -0.54 -18.62 15.75 -3.70 -0.06 -18.68 16 7 C -0.04 -1.22 7.19 42.55 0.31 -0.91 16 8 N -0.36 -10.36 11.89 -48.95 -0.58 -10.95 16 9 O 0.13 3.07 11.18 78.69 0.88 3.95 16 10 C -0.02 -0.43 7.38 24.99 0.18 -0.25 16 11 C -0.17 -3.86 6.04 -20.05 -0.12 -3.98 16 12 C -0.04 -0.79 5.66 29.83 0.17 -0.62 16 13 C -0.12 -1.12 5.92 30.81 0.18 -0.94 16 14 C -0.12 -0.66 5.88 30.77 0.18 -0.48 16 15 C -0.04 -0.26 6.31 29.96 0.19 -0.07 16 16 C -0.10 -3.29 2.27 -10.72 -0.02 -3.32 16 17 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 18 C -0.10 -2.99 4.89 30.62 0.15 -2.85 16 19 C -0.13 -4.89 6.08 30.67 0.19 -4.70 16 20 C 0.17 8.46 5.30 86.36 0.46 8.92 16 21 N -0.61 -30.96 2.99 -699.09 -2.09 -33.05 16 22 C -0.27 -14.91 9.58 84.03 0.81 -14.10 16 23 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 24 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 25 N -0.93 -55.80 11.20 21.65 0.24 -55.55 16 26 Si 0.96 45.75 29.59 68.60 2.03 47.78 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 29 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 30 C 0.15 6.27 5.26 86.36 0.45 6.73 16 31 H 0.08 2.12 6.59 -2.39 -0.02 2.10 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.69 6.23 -2.39 -0.01 1.68 16 34 H 0.41 12.85 7.04 -92.70 -0.65 12.20 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.51 7.83 -2.39 -0.02 1.49 16 37 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.07 0.65 8.12 -2.38 -0.02 0.63 16 39 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 40 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.07 2.05 6.63 -2.39 -0.02 2.04 16 44 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.05 2.81 6.06 -2.39 -0.01 2.80 16 48 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 49 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 50 H 0.04 1.75 6.75 -2.39 -0.02 1.74 16 51 H 0.03 1.05 6.06 -2.39 -0.01 1.04 16 Total: -1.00 -70.83 393.30 3.44 -67.40 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.29 Total: 21.32 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 4.95 Total: 1.60 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -4.66 Total: -123.38 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.82 Total: -14.73 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -70.83 3.44 -67.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025541291.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.023 kcal (2) G-P(sol) polarization free energy of solvation -70.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds