Wall clock time and date at job start Wed Apr 1 2020 04:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47489 * 2 1 4 4 N 1.46510 * 109.46838 * 119.99614 * 2 1 3 5 5 C 1.34772 * 119.99618 * 275.00029 * 4 2 1 6 6 O 1.21495 * 120.00690 * 0.02562 * 5 4 2 7 7 C 1.48336 * 119.99804 * 180.02562 * 5 4 2 8 8 N 1.31495 * 127.15263 * 359.97195 * 7 5 4 9 9 O 1.21436 * 111.52676 * 180.02562 * 8 7 5 10 10 C 1.33189 * 111.56439 * 359.94728 * 9 8 7 11 11 C 1.35375 * 106.63805 * 0.09756 * 10 9 8 12 12 C 1.50059 * 124.93688 * 179.78555 * 11 10 9 13 13 C 1.53547 * 108.23455 * 343.89662 * 12 11 10 14 14 C 1.53108 * 109.51223 * 49.19985 * 13 12 11 15 15 C 1.50598 * 129.60046 * 180.11744 * 10 9 8 16 16 C 1.53003 * 109.47400 * 239.99099 * 2 1 3 17 17 H 1.08997 * 109.49807 * 299.94246 * 16 2 1 18 18 C 1.53043 * 109.49330 * 60.00225 * 16 2 1 19 19 C 1.53035 * 109.53710 * 181.31440 * 18 16 2 20 20 C 1.53188 * 109.31618 * 298.63776 * 19 18 16 21 21 N 1.46934 * 108.77492 * 54.63284 * 20 19 18 22 22 C 1.36936 * 120.62700 * 126.41620 * 21 20 19 23 23 H 1.08006 * 119.99645 * 207.66941 * 22 21 20 24 24 C 1.38808 * 120.00446 * 27.67020 * 22 21 20 25 25 N 1.31617 * 119.99734 * 17.36796 * 24 22 21 26 26 Si 1.86800 * 120.00053 * 197.36730 * 24 22 21 27 27 H 1.48498 * 109.46987 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47236 * 119.99977 * 26 24 22 29 29 H 1.48500 * 109.47053 * 239.99896 * 26 24 22 30 30 C 1.46928 * 118.73854 * 306.39278 * 21 20 19 31 31 H 1.09001 * 109.47024 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47009 * 300.00233 * 1 2 3 33 33 H 1.09004 * 109.46486 * 60.00401 * 1 2 3 34 34 H 0.96999 * 119.99812 * 94.99452 * 4 2 1 35 35 H 1.08999 * 109.71643 * 103.57580 * 12 11 10 36 36 H 1.09006 * 109.70920 * 224.16672 * 12 11 10 37 37 H 1.08998 * 109.45988 * 289.18613 * 13 12 11 38 38 H 1.09004 * 109.46313 * 169.21119 * 13 12 11 39 39 H 1.08997 * 109.43048 * 170.07309 * 14 13 12 40 40 H 1.09002 * 109.42487 * 50.22875 * 14 13 12 41 41 H 1.09000 * 109.69981 * 43.57028 * 15 10 9 42 42 H 1.09005 * 109.73219 * 282.99848 * 15 10 9 43 43 H 1.08997 * 109.46313 * 301.33892 * 18 16 2 44 44 H 1.08998 * 109.45618 * 61.30994 * 18 16 2 45 45 H 1.09002 * 109.49756 * 58.59115 * 19 18 16 46 46 H 1.09000 * 109.49799 * 178.64944 * 19 18 16 47 47 H 1.08998 * 109.59274 * 174.42243 * 20 19 18 48 48 H 1.09001 * 109.58444 * 294.84852 * 20 19 18 49 49 H 0.97007 * 119.99851 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.58819 * 293.82508 * 30 21 20 51 51 H 1.08993 * 109.58421 * 173.39538 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8576 1.1606 2.4118 7 6 2.6419 -0.7171 3.5683 8 7 2.9927 -1.9804 3.6684 9 8 3.3557 -2.2542 4.7945 10 6 3.2938 -1.1951 5.5998 11 6 2.8331 -0.1655 4.8514 12 6 2.6017 1.2283 5.3569 13 6 2.5786 1.1851 6.8916 14 6 3.7980 0.4112 7.3998 15 6 3.6456 -1.0772 7.0594 16 6 2.0401 -0.7214 -1.2491 17 1 1.6779 -1.7495 -1.2489 18 6 1.5303 -0.0006 -2.4992 19 6 2.0128 -0.7402 -3.7490 20 6 3.5443 -0.7373 -3.7800 21 7 4.0439 -1.2974 -2.5168 22 6 4.9329 -2.3390 -2.5188 23 1 4.9620 -3.0256 -1.6855 24 6 5.7965 -2.5125 -3.5915 25 7 6.0122 -1.5209 -4.4297 26 14 6.6526 -4.1532 -3.8455 27 1 6.2445 -5.0957 -2.7729 28 1 6.2706 -4.7115 -5.1675 29 1 8.1238 -3.9566 -3.7976 30 6 3.5720 -0.7183 -1.2516 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 2.2489 -1.6318 1.1528 35 1 3.4076 1.8803 5.0198 36 1 1.6474 1.6008 4.9845 37 1 1.6679 0.6892 7.2272 38 1 2.6043 2.2017 7.2840 39 1 3.8781 0.5296 8.4804 40 1 4.6985 0.8012 6.9254 41 1 4.5839 -1.5965 7.2543 42 1 2.8516 -1.5132 7.6657 43 1 0.4406 0.0202 -2.4875 44 1 1.9129 1.0200 -2.5111 45 1 1.6513 -1.7683 -3.7256 46 1 1.6295 -0.2401 -4.6385 47 1 3.8942 -1.3464 -4.6135 48 1 3.9055 0.2847 -3.8947 49 1 6.6155 -1.6423 -5.1796 50 1 3.9354 0.3053 -1.1602 51 1 3.9400 -1.3148 -0.4170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025541292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:00 Heat of formation + Delta-G solvation = 23.720671 kcal Electronic energy + Delta-G solvation = -31341.901648 eV Core-core repulsion = 27244.083474 eV Total energy + Delta-G solvation = -4097.818175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.24318 -39.86770 -38.11504 -37.78311 -35.28326 -34.10237 -32.99824 -31.24970 -31.15253 -30.51731 -30.26350 -28.50208 -25.57812 -25.08715 -24.39085 -23.11637 -22.95601 -21.93203 -20.79974 -20.44489 -19.81986 -19.01161 -17.99898 -17.75768 -16.76942 -16.58181 -15.89224 -15.38094 -15.00412 -14.75541 -14.38745 -14.32958 -14.25520 -14.05363 -13.70961 -13.49273 -13.45539 -13.38486 -13.18588 -12.71692 -12.66147 -12.46175 -12.25823 -11.81897 -11.64431 -11.56646 -11.37870 -11.31672 -11.11416 -11.03181 -10.97086 -10.67059 -10.42185 -10.37759 -10.24730 -10.15016 -10.12218 -9.88663 -9.56885 -9.42504 -9.30930 -8.97776 -8.45434 -6.65988 -5.77678 -3.19902 0.99617 1.50663 2.65972 2.98779 3.15935 3.37536 3.45455 3.47919 3.85976 4.24218 4.36308 4.43782 4.49035 4.66305 4.73345 4.86075 4.95565 5.05205 5.11986 5.22946 5.25293 5.36715 5.38536 5.40945 5.44576 5.54912 5.56628 5.58980 5.63254 5.73016 5.75243 5.79588 5.89682 5.98385 6.02563 6.06500 6.10604 6.28424 6.34542 6.41657 6.50490 6.62239 6.71014 6.80871 6.87579 6.98136 7.41092 7.44332 7.68577 7.80867 7.87029 8.12310 8.45841 9.22486 9.85886 10.42609 11.30634 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.002766 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.404624 B =10121.174655 C =11709.052743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.089 0.911 4 N -0.701 5.701 5 C 0.600 3.400 6 O -0.525 6.525 7 C -0.015 4.015 8 N -0.333 5.333 9 O 0.128 5.872 10 C -0.041 4.041 11 C -0.153 4.153 12 C -0.045 4.045 13 C -0.123 4.123 14 C -0.119 4.119 15 C -0.034 4.034 16 C -0.111 4.111 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.169 3.831 21 N -0.591 5.591 22 C -0.251 4.251 23 H 0.065 0.935 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.277 1.277 28 H -0.289 1.289 29 H -0.290 1.290 30 C 0.155 3.845 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.407 0.593 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.087 0.913 48 H 0.017 0.983 49 H 0.253 0.747 50 H 0.017 0.983 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.791 3.911 22.142 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.107 0.893 4 N -0.352 5.352 5 C 0.383 3.617 6 O -0.400 6.400 7 C -0.174 4.174 8 N -0.035 5.035 9 O 0.055 5.945 10 C -0.106 4.106 11 C -0.158 4.158 12 C -0.082 4.082 13 C -0.161 4.161 14 C -0.157 4.157 15 C -0.072 4.072 16 C -0.132 4.132 17 H 0.091 0.909 18 C -0.138 4.138 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.313 5.313 22 C -0.381 4.381 23 H 0.083 0.917 24 C -0.197 4.197 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.202 1.202 28 H -0.216 1.216 29 H -0.217 1.217 30 C 0.028 3.972 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.243 0.757 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.105 0.895 48 H 0.035 0.965 49 H 0.063 0.937 50 H 0.034 0.966 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.858 3.771 21.077 23.572 hybrid contribution 0.576 -0.738 -0.034 0.937 sum -9.282 3.033 21.044 23.199 Atomic orbital electron populations 1.22209 0.95394 1.02057 1.02310 1.21166 0.93679 0.97579 0.83261 0.89269 1.46002 1.65494 1.14609 1.09091 1.16815 0.77804 0.85757 0.81295 1.90765 1.50421 1.14533 1.84289 1.23094 1.06131 0.91193 0.96933 1.74610 1.13804 1.16205 0.98835 1.84697 1.61205 1.34490 1.14128 1.24130 1.03510 0.86213 0.96720 1.20647 1.04842 0.99002 0.91260 1.20000 1.03829 0.89950 0.94439 1.21720 0.98375 1.01111 0.94874 1.21661 0.99390 0.92877 1.01773 1.20259 1.03363 0.98656 0.84966 1.21982 0.99630 0.99283 0.92308 0.90926 1.21442 0.98750 0.99045 0.94599 1.22175 1.00871 0.99363 0.95697 1.20804 0.87451 0.97240 0.90213 1.44053 1.49712 1.38097 0.99459 1.19216 1.11193 1.02155 1.05525 0.91730 1.25028 0.97276 0.97514 0.99862 1.70056 1.38088 1.29303 1.17196 0.86243 0.79028 0.83885 0.77768 1.20243 1.21551 1.21747 1.20859 0.89832 0.96358 0.90126 0.92571 0.92607 0.90982 0.75739 0.89788 0.89258 0.91406 0.90591 0.90051 0.90909 0.88803 0.88756 0.93056 0.92528 0.92764 0.93179 0.89517 0.96498 0.93717 0.96551 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.13 37.16 0.34 -1.75 16 2 C 0.15 2.22 2.16 -67.92 -0.15 2.07 16 3 H 0.09 1.47 7.58 -51.93 -0.39 1.07 16 4 N -0.70 -10.57 4.48 -54.59 -0.24 -10.81 16 5 C 0.60 9.46 7.81 -12.11 -0.09 9.36 16 6 O -0.53 -9.13 15.75 5.37 0.08 -9.04 16 7 C -0.02 -0.22 7.19 -82.82 -0.60 -0.82 16 8 N -0.33 -4.77 11.89 33.29 0.40 -4.37 16 9 O 0.13 1.57 11.18 19.19 0.21 1.78 16 10 C -0.04 -0.42 7.38 -35.38 -0.26 -0.68 16 11 C -0.15 -1.81 6.04 -104.92 -0.63 -2.45 16 12 C -0.04 -0.43 5.66 -27.91 -0.16 -0.59 16 13 C -0.12 -0.77 5.92 -26.39 -0.16 -0.93 16 14 C -0.12 -0.61 5.88 -26.45 -0.16 -0.76 16 15 C -0.03 -0.20 6.31 -27.71 -0.17 -0.37 16 16 C -0.11 -1.89 1.97 -90.50 -0.18 -2.07 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.10 -1.66 4.85 -26.69 -0.13 -1.79 16 19 C -0.14 -2.70 6.08 -26.62 -0.16 -2.86 16 20 C 0.17 4.06 5.31 -3.71 -0.02 4.04 16 21 N -0.59 -14.97 3.00 -172.32 -0.52 -15.49 16 22 C -0.25 -6.99 9.58 -15.06 -0.14 -7.14 16 23 H 0.06 1.78 7.89 -52.48 -0.41 1.36 16 24 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 25 N -0.90 -26.51 11.19 55.49 0.62 -25.89 16 26 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 C 0.16 3.31 5.56 -3.71 -0.02 3.29 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.86 6.40 -51.93 -0.33 0.52 16 34 H 0.41 6.01 8.20 -40.82 -0.33 5.67 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.96 7.84 -51.93 -0.41 0.55 16 37 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.72 6.36 -51.93 -0.33 0.39 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.05 1.08 7.45 -51.93 -0.39 0.69 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -32.10 398.27 -9.64 -41.73 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.39 Total: 2.61 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.78 Total: -3.48 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.26 Total: -56.56 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.30 Total: -7.26 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.10 -9.64 -41.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025541292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.452 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds