Wall clock time and date at job start Wed Apr 1 2020 04:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47489 * 2 1 4 4 N 1.46510 * 109.46838 * 119.99614 * 2 1 3 5 5 C 1.34772 * 119.99618 * 275.00029 * 4 2 1 6 6 O 1.21495 * 120.00690 * 0.02562 * 5 4 2 7 7 C 1.48336 * 119.99804 * 180.02562 * 5 4 2 8 8 N 1.31495 * 127.15263 * 359.97195 * 7 5 4 9 9 O 1.21436 * 111.52676 * 180.02562 * 8 7 5 10 10 C 1.33189 * 111.56439 * 359.94728 * 9 8 7 11 11 C 1.35375 * 106.63805 * 0.09756 * 10 9 8 12 12 C 1.50059 * 124.93688 * 179.78555 * 11 10 9 13 13 C 1.53547 * 108.23455 * 343.89662 * 12 11 10 14 14 C 1.53108 * 109.51223 * 49.19985 * 13 12 11 15 15 C 1.50598 * 129.60046 * 180.11744 * 10 9 8 16 16 C 1.53003 * 109.47400 * 239.99099 * 2 1 3 17 17 H 1.08997 * 109.49807 * 299.94246 * 16 2 1 18 18 C 1.53043 * 109.49330 * 60.00225 * 16 2 1 19 19 C 1.53035 * 109.53710 * 181.31440 * 18 16 2 20 20 C 1.53188 * 109.31618 * 298.63776 * 19 18 16 21 21 N 1.46934 * 108.77492 * 54.63284 * 20 19 18 22 22 C 1.36936 * 120.62700 * 126.41620 * 21 20 19 23 23 H 1.08006 * 119.99645 * 207.66941 * 22 21 20 24 24 C 1.38808 * 120.00446 * 27.67020 * 22 21 20 25 25 N 1.31617 * 119.99734 * 17.36796 * 24 22 21 26 26 Si 1.86800 * 120.00053 * 197.36730 * 24 22 21 27 27 H 1.48498 * 109.46987 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47236 * 119.99977 * 26 24 22 29 29 H 1.48500 * 109.47053 * 239.99896 * 26 24 22 30 30 C 1.46928 * 118.73854 * 306.39278 * 21 20 19 31 31 H 1.09001 * 109.47024 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47009 * 300.00233 * 1 2 3 33 33 H 1.09004 * 109.46486 * 60.00401 * 1 2 3 34 34 H 0.96999 * 119.99812 * 94.99452 * 4 2 1 35 35 H 1.08999 * 109.71643 * 103.57580 * 12 11 10 36 36 H 1.09006 * 109.70920 * 224.16672 * 12 11 10 37 37 H 1.08998 * 109.45988 * 289.18613 * 13 12 11 38 38 H 1.09004 * 109.46313 * 169.21119 * 13 12 11 39 39 H 1.08997 * 109.43048 * 170.07309 * 14 13 12 40 40 H 1.09002 * 109.42487 * 50.22875 * 14 13 12 41 41 H 1.09000 * 109.69981 * 43.57028 * 15 10 9 42 42 H 1.09005 * 109.73219 * 282.99848 * 15 10 9 43 43 H 1.08997 * 109.46313 * 301.33892 * 18 16 2 44 44 H 1.08998 * 109.45618 * 61.30994 * 18 16 2 45 45 H 1.09002 * 109.49756 * 58.59115 * 19 18 16 46 46 H 1.09000 * 109.49799 * 178.64944 * 19 18 16 47 47 H 1.08998 * 109.59274 * 174.42243 * 20 19 18 48 48 H 1.09001 * 109.58444 * 294.84852 * 20 19 18 49 49 H 0.97007 * 119.99851 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.58819 * 293.82508 * 30 21 20 51 51 H 1.08993 * 109.58421 * 173.39538 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8576 1.1606 2.4118 7 6 2.6419 -0.7171 3.5683 8 7 2.9927 -1.9804 3.6684 9 8 3.3557 -2.2542 4.7945 10 6 3.2938 -1.1951 5.5998 11 6 2.8331 -0.1655 4.8514 12 6 2.6017 1.2283 5.3569 13 6 2.5786 1.1851 6.8916 14 6 3.7980 0.4112 7.3998 15 6 3.6456 -1.0772 7.0594 16 6 2.0401 -0.7214 -1.2491 17 1 1.6779 -1.7495 -1.2489 18 6 1.5303 -0.0006 -2.4992 19 6 2.0128 -0.7402 -3.7490 20 6 3.5443 -0.7373 -3.7800 21 7 4.0439 -1.2974 -2.5168 22 6 4.9329 -2.3390 -2.5188 23 1 4.9620 -3.0256 -1.6855 24 6 5.7965 -2.5125 -3.5915 25 7 6.0122 -1.5209 -4.4297 26 14 6.6526 -4.1532 -3.8455 27 1 6.2445 -5.0957 -2.7729 28 1 6.2706 -4.7115 -5.1675 29 1 8.1238 -3.9566 -3.7976 30 6 3.5720 -0.7183 -1.2516 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 2.2489 -1.6318 1.1528 35 1 3.4076 1.8803 5.0198 36 1 1.6474 1.6008 4.9845 37 1 1.6679 0.6892 7.2272 38 1 2.6043 2.2017 7.2840 39 1 3.8781 0.5296 8.4804 40 1 4.6985 0.8012 6.9254 41 1 4.5839 -1.5965 7.2543 42 1 2.8516 -1.5132 7.6657 43 1 0.4406 0.0202 -2.4875 44 1 1.9129 1.0200 -2.5111 45 1 1.6513 -1.7683 -3.7256 46 1 1.6295 -0.2401 -4.6385 47 1 3.8942 -1.3464 -4.6135 48 1 3.9055 0.2847 -3.8947 49 1 6.6155 -1.6423 -5.1796 50 1 3.9354 0.3053 -1.1602 51 1 3.9400 -1.3148 -0.4170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025541292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:59 Heat of formation + Delta-G solvation = 5.034896 kcal Electronic energy + Delta-G solvation = -31342.711924 eV Core-core repulsion = 27244.083474 eV Total energy + Delta-G solvation = -4098.628451 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.22257 -41.15000 -39.51113 -38.58180 -36.82119 -35.14155 -34.66370 -32.66663 -32.18931 -31.99595 -31.13297 -29.97359 -27.24623 -26.42899 -25.24928 -24.40706 -23.74365 -23.66256 -22.10223 -21.68333 -20.93690 -20.31679 -19.00712 -18.82246 -18.55261 -17.72832 -17.20097 -16.85603 -16.14929 -16.08686 -15.89704 -15.47569 -15.29655 -15.01114 -14.87159 -14.78695 -14.74457 -14.31504 -14.20823 -14.18054 -14.08665 -13.77407 -13.33405 -13.25999 -13.06213 -12.84377 -12.70503 -12.50245 -12.32204 -12.27453 -11.99558 -11.91250 -11.87274 -11.82579 -11.67366 -11.55535 -11.41755 -11.33117 -11.20780 -11.07474 -10.58352 -10.25665 -10.13369 -8.72794 -7.91421 -5.37409 -0.02823 0.60075 1.42420 1.43871 1.54988 1.74164 1.95030 1.99282 2.46926 2.82209 3.22449 3.43273 3.50655 3.63782 3.85609 3.92582 3.92914 3.98085 3.99998 4.08573 4.22969 4.29910 4.35512 4.38355 4.43942 4.48806 4.57120 4.57864 4.70682 4.77631 4.80949 4.86836 4.88748 4.92880 4.99616 5.00836 5.04699 5.15395 5.17930 5.18944 5.21222 5.27490 5.33450 5.37914 5.42838 5.43813 5.52485 5.62829 5.75105 6.21776 6.34706 6.82682 6.98161 7.10590 7.81148 8.33023 9.14653 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.002766 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.404624 B =10121.174655 C =11709.052743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 H 0.074 0.926 4 N -0.700 5.700 5 C 0.598 3.402 6 O -0.547 6.547 7 C -0.041 4.041 8 N -0.356 5.356 9 O 0.131 5.869 10 C -0.024 4.024 11 C -0.173 4.173 12 C -0.045 4.045 13 C -0.118 4.118 14 C -0.117 4.117 15 C -0.035 4.035 16 C -0.095 4.095 17 H 0.075 0.925 18 C -0.096 4.096 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.609 5.609 22 C -0.264 4.264 23 H 0.063 0.937 24 C -0.050 4.050 25 N -0.934 5.934 26 Si 0.967 3.033 27 H -0.267 1.267 28 H -0.286 1.286 29 H -0.292 1.292 30 C 0.156 3.844 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.408 0.592 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.053 0.947 48 H -0.008 1.008 49 H 0.250 0.750 50 H -0.001 1.001 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.147 3.189 24.548 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 H 0.092 0.908 4 N -0.351 5.351 5 C 0.382 3.618 6 O -0.424 6.424 7 C -0.198 4.198 8 N -0.058 5.058 9 O 0.056 5.944 10 C -0.088 4.088 11 C -0.178 4.178 12 C -0.083 4.083 13 C -0.155 4.155 14 C -0.154 4.154 15 C -0.072 4.072 16 C -0.115 4.115 17 H 0.094 0.906 18 C -0.134 4.134 19 C -0.169 4.169 20 C 0.047 3.953 21 N -0.332 5.332 22 C -0.394 4.394 23 H 0.081 0.919 24 C -0.246 4.246 25 N -0.580 5.580 26 Si 0.795 3.205 27 H -0.192 1.192 28 H -0.213 1.213 29 H -0.219 1.219 30 C 0.030 3.970 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.244 0.756 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.083 0.917 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.072 0.928 48 H 0.010 0.990 49 H 0.060 0.940 50 H 0.017 0.983 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.241 3.047 23.490 26.219 hybrid contribution 1.065 -0.478 -0.708 1.365 sum -10.176 2.569 22.782 25.083 Atomic orbital electron populations 1.22138 0.92942 1.02961 1.02998 1.21068 0.95401 0.96284 0.82285 0.90767 1.46020 1.65390 1.14599 1.09074 1.17027 0.77385 0.85581 0.81793 1.90737 1.51521 1.15404 1.84774 1.23125 1.07434 0.91800 0.97456 1.74586 1.14877 1.16318 1.00021 1.84655 1.60612 1.35247 1.13860 1.24977 1.01087 0.84660 0.98090 1.20988 1.05738 1.00505 0.90587 1.20050 1.02450 0.88549 0.97216 1.21726 0.99437 1.02521 0.91845 1.21707 0.98231 0.91954 1.03524 1.20626 1.05170 0.99625 0.81809 1.21755 0.95919 0.99945 0.93885 0.90642 1.21443 1.01069 0.98210 0.92651 1.22007 0.96535 1.00198 0.98169 1.20670 0.91071 0.94809 0.88791 1.44315 1.49828 1.38018 1.00999 1.19509 1.11522 1.02842 1.05517 0.91946 1.25801 0.98315 1.00676 0.99795 1.70208 1.38980 1.31155 1.17688 0.85213 0.77525 0.79996 0.77762 1.19172 1.21280 1.21923 1.20922 0.93002 0.94719 0.88334 0.91509 0.92963 0.89232 0.75604 0.90776 0.90964 0.90710 0.89098 0.86928 0.91709 0.86797 0.86194 0.89058 0.92766 0.92732 0.90819 0.92837 0.99012 0.94044 0.98339 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.13 71.98 0.66 -2.95 16 2 C 0.15 4.55 2.16 44.99 0.10 4.64 16 3 H 0.07 2.45 7.58 -2.39 -0.02 2.43 16 4 N -0.70 -21.44 4.48 -444.91 -1.99 -23.43 16 5 C 0.60 19.45 7.81 86.93 0.68 20.13 16 6 O -0.55 -19.68 15.75 -3.70 -0.06 -19.74 16 7 C -0.04 -1.23 7.19 42.55 0.31 -0.92 16 8 N -0.36 -10.35 11.89 -48.94 -0.58 -10.93 16 9 O 0.13 3.11 11.18 78.69 0.88 3.99 16 10 C -0.02 -0.44 7.38 24.99 0.18 -0.26 16 11 C -0.17 -4.09 6.04 -20.06 -0.12 -4.21 16 12 C -0.05 -0.87 5.66 29.83 0.17 -0.70 16 13 C -0.12 -1.22 5.92 30.81 0.18 -1.03 16 14 C -0.12 -0.81 5.88 30.78 0.18 -0.63 16 15 C -0.03 -0.28 6.31 29.96 0.19 -0.09 16 16 C -0.09 -3.16 1.97 -10.71 -0.02 -3.18 16 17 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 18 C -0.10 -2.99 4.85 30.62 0.15 -2.84 16 19 C -0.13 -4.81 6.08 30.67 0.19 -4.62 16 20 C 0.17 8.52 5.31 86.36 0.46 8.98 16 21 N -0.61 -31.70 3.00 -699.09 -2.09 -33.79 16 22 C -0.26 -15.04 9.58 84.03 0.81 -14.23 16 23 H 0.06 3.51 7.89 -2.91 -0.02 3.48 16 24 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 25 N -0.93 -56.73 11.19 21.65 0.24 -56.49 16 26 Si 0.97 46.01 29.59 68.60 2.03 48.04 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 28 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 29 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 30 C 0.16 6.84 5.56 86.36 0.48 7.32 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.81 6.40 -2.38 -0.02 1.80 16 34 H 0.41 12.29 8.20 -92.71 -0.76 11.53 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.61 7.84 -2.38 -0.02 1.59 16 37 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.06 0.59 8.12 -2.39 -0.02 0.57 16 41 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 43 H 0.09 2.21 6.36 -2.39 -0.02 2.19 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.05 2.99 6.04 -2.39 -0.01 2.98 16 48 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 49 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 50 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 51 H 0.04 1.88 7.45 -2.39 -0.02 1.86 16 Total: -1.00 -73.31 398.27 3.60 -69.71 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.18 Total: 19.72 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.00 Total: 2.92 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -4.42 Total: -124.64 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.82 Total: -15.75 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -73.31 3.60 -69.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025541292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.743 kcal (2) G-P(sol) polarization free energy of solvation -73.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds