Wall clock time and date at job start Wed Apr 1 2020 04:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 N 1.46500 * 109.46896 * 239.99919 * 2 1 3 5 5 C 1.34781 * 119.99871 * 85.00075 * 4 2 1 6 6 O 1.21502 * 119.99675 * 0.02562 * 5 4 2 7 7 C 1.48331 * 120.00345 * 179.97438 * 5 4 2 8 8 N 1.31497 * 127.15292 * 359.68182 * 7 5 4 9 9 O 1.21426 * 111.52614 * 179.80226 * 8 7 5 10 10 C 1.33187 * 111.56847 * 0.43956 * 9 8 7 11 11 C 1.35374 * 106.63700 * 359.78023 * 10 9 8 12 12 C 1.50062 * 124.94049 * 179.82187 * 11 10 9 13 13 C 1.53551 * 108.23370 * 343.89179 * 12 11 10 14 14 C 1.53104 * 109.51154 * 49.19420 * 13 12 11 15 15 C 1.50599 * 129.60326 * 179.82046 * 10 9 8 16 16 C 1.52998 * 109.47298 * 120.00428 * 2 1 3 17 17 H 1.09005 * 109.52424 * 59.91283 * 16 2 1 18 18 C 1.53041 * 109.49655 * 299.83927 * 16 2 1 19 19 C 1.53070 * 109.65895 * 178.74768 * 18 16 2 20 20 C 1.53192 * 109.29486 * 61.15317 * 19 18 16 21 21 N 1.46923 * 108.89086 * 305.57609 * 20 19 18 22 22 C 1.36938 * 120.62890 * 233.55909 * 21 20 19 23 23 H 1.08011 * 119.99821 * 151.82869 * 22 21 20 24 24 C 1.38810 * 120.00150 * 331.82504 * 22 21 20 25 25 N 1.31613 * 120.00273 * 343.07447 * 24 22 21 26 26 Si 1.86803 * 119.99828 * 163.06738 * 24 22 21 27 27 H 1.48503 * 109.47179 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.47229 * 120.00279 * 26 24 22 29 29 H 1.48502 * 109.47136 * 240.00365 * 26 24 22 30 30 C 1.46928 * 118.73969 * 53.53853 * 21 20 19 31 31 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46896 * 299.99539 * 1 2 3 33 33 H 1.08999 * 109.47018 * 59.99567 * 1 2 3 34 34 H 0.96997 * 120.00877 * 264.99723 * 4 2 1 35 35 H 1.09009 * 109.70712 * 103.57156 * 12 11 10 36 36 H 1.08993 * 109.71304 * 224.15764 * 12 11 10 37 37 H 1.09004 * 109.46165 * 169.20732 * 13 12 11 38 38 H 1.08998 * 109.46117 * 289.18205 * 13 12 11 39 39 H 1.08998 * 109.43333 * 50.23744 * 14 13 12 40 40 H 1.08997 * 109.42933 * 170.08233 * 14 13 12 41 41 H 1.08995 * 109.70089 * 43.53236 * 15 10 9 42 42 H 1.08997 * 109.73249 * 282.95482 * 15 10 9 43 43 H 1.09004 * 109.45782 * 298.70130 * 18 16 2 44 44 H 1.08998 * 109.46417 * 58.67464 * 18 16 2 45 45 H 1.08996 * 109.39171 * 301.27441 * 19 18 16 46 46 H 1.09003 * 109.62547 * 181.16407 * 19 18 16 47 47 H 1.09002 * 109.58742 * 185.72218 * 20 19 18 48 48 H 1.08998 * 109.59351 * 65.43846 * 20 19 18 49 49 H 0.96997 * 120.00271 * 180.02562 * 25 24 22 50 50 H 1.09004 * 109.58144 * 66.18005 * 30 21 20 51 51 H 1.08998 * 109.58393 * 186.45981 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8585 1.1608 -2.4115 7 6 2.6419 -0.7173 -3.5682 8 7 2.9987 -1.9791 -3.6668 9 8 3.3566 -2.2541 -4.7941 10 6 3.2925 -1.1958 -5.6001 11 6 2.8335 -0.1656 -4.8513 12 6 2.6085 1.2299 -5.3552 13 6 3.3494 1.3834 -6.6914 14 6 3.0028 0.2059 -7.6065 15 6 3.6395 -1.0791 -7.0609 16 6 2.0401 -0.7213 1.2492 17 1 1.6759 -1.7488 1.2507 18 6 1.5336 0.0019 2.4992 19 6 2.0159 -0.7348 3.7513 20 6 3.5476 -0.7382 3.7781 21 7 4.0442 -1.3006 2.5149 22 6 4.9301 -2.3449 2.5166 23 1 4.9508 -3.0369 1.6876 24 6 5.8015 -2.5140 3.5838 25 7 6.0199 -1.5205 4.4189 26 14 6.6641 -4.1518 3.8347 27 1 6.2515 -5.0974 2.7666 28 1 8.1344 -3.9510 3.7765 29 1 6.2926 -4.7090 5.1602 30 6 3.5719 -0.7217 1.2498 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2491 -1.6318 -1.1528 35 1 1.5421 1.3993 -5.5046 36 1 2.9973 1.9484 -4.6338 37 1 3.0476 2.3157 -7.1689 38 1 4.4242 1.3991 -6.5110 39 1 1.9203 0.0849 -7.6476 40 1 3.3833 0.4016 -8.6090 41 1 3.2483 -1.9410 -7.6014 42 1 4.7220 -1.0316 -7.1793 43 1 1.9183 1.0217 2.5096 44 1 0.4439 0.0249 2.4890 45 1 1.6501 -1.7613 3.7307 46 1 1.6377 -0.2311 4.6409 47 1 3.8971 -1.3474 4.6117 48 1 3.9134 0.2822 3.8926 49 1 6.6292 -1.6385 5.1644 50 1 3.9377 0.3009 1.1569 51 1 3.9396 -1.3185 0.4151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025541293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:03 Heat of formation + Delta-G solvation = 23.540008 kcal Electronic energy + Delta-G solvation = -31342.663042 eV Core-core repulsion = 27244.837033 eV Total energy + Delta-G solvation = -4097.826009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.24496 -39.86587 -38.11287 -37.78018 -35.28098 -34.10200 -32.99639 -31.24825 -31.15311 -30.51642 -30.26353 -28.50353 -25.57736 -25.08644 -24.39048 -23.11525 -22.95682 -21.93464 -20.80068 -20.44677 -19.81456 -19.01125 -17.99336 -17.76304 -16.77356 -16.57512 -15.89275 -15.37893 -15.00002 -14.75529 -14.38965 -14.35021 -14.22030 -14.08892 -13.67657 -13.50071 -13.46155 -13.37701 -13.18455 -12.72109 -12.66332 -12.45830 -12.25977 -11.81951 -11.64777 -11.56708 -11.37856 -11.30855 -11.11331 -11.02967 -10.96813 -10.67123 -10.43081 -10.36530 -10.25192 -10.14874 -10.12143 -9.88779 -9.56970 -9.42506 -9.30922 -8.97597 -8.45567 -6.65225 -5.77668 -3.20471 0.99699 1.50663 2.65951 2.98767 3.16025 3.37461 3.45349 3.47803 3.86019 4.24216 4.36620 4.43508 4.48936 4.66234 4.73246 4.86155 4.95589 5.06495 5.11700 5.23020 5.25325 5.36661 5.37577 5.41050 5.44838 5.54977 5.56254 5.59072 5.63188 5.73272 5.75192 5.79642 5.90345 5.98502 6.02945 6.06481 6.10659 6.28541 6.34496 6.41760 6.50599 6.62314 6.70967 6.81045 6.87568 6.98303 7.40972 7.44361 7.68809 7.80861 7.87133 8.12374 8.46182 9.22630 9.85838 10.42802 11.30683 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.002762 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.294445 B =10136.306305 C =11688.932731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.089 0.911 4 N -0.701 5.701 5 C 0.600 3.400 6 O -0.525 6.525 7 C -0.015 4.015 8 N -0.333 5.333 9 O 0.128 5.872 10 C -0.041 4.041 11 C -0.153 4.153 12 C -0.044 4.044 13 C -0.124 4.124 14 C -0.118 4.118 15 C -0.035 4.035 16 C -0.111 4.111 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.169 3.831 21 N -0.591 5.591 22 C -0.252 4.252 23 H 0.065 0.935 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.277 1.277 28 H -0.290 1.290 29 H -0.289 1.289 30 C 0.155 3.845 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.086 0.914 48 H 0.017 0.983 49 H 0.253 0.747 50 H 0.016 0.984 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.811 3.910 -22.123 24.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.107 0.893 4 N -0.352 5.352 5 C 0.383 3.617 6 O -0.400 6.400 7 C -0.174 4.174 8 N -0.034 5.034 9 O 0.055 5.945 10 C -0.106 4.106 11 C -0.158 4.158 12 C -0.082 4.082 13 C -0.162 4.162 14 C -0.156 4.156 15 C -0.073 4.073 16 C -0.132 4.132 17 H 0.091 0.909 18 C -0.138 4.138 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.313 5.313 22 C -0.381 4.381 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.202 1.202 28 H -0.217 1.217 29 H -0.215 1.215 30 C 0.028 3.972 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.243 0.757 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.035 0.965 49 H 0.063 0.937 50 H 0.034 0.966 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.869 3.772 -21.055 23.557 hybrid contribution 0.570 -0.740 0.031 0.935 sum -9.299 3.033 -21.025 23.188 Atomic orbital electron populations 1.22208 0.95394 1.02056 1.02311 1.21159 0.93679 0.97575 0.83259 0.89269 1.46000 1.65492 1.14612 1.09089 1.16819 0.77805 0.85762 0.81290 1.90766 1.50399 1.14517 1.84329 1.23092 1.06083 0.91276 0.96901 1.74609 1.13778 1.16233 0.98827 1.84693 1.61349 1.34446 1.14025 1.24129 1.03683 0.86088 0.96667 1.20648 1.04985 0.98909 0.91220 1.19997 1.01418 0.90238 0.96524 1.21728 1.01008 0.98514 0.94939 1.21652 1.01478 0.93170 0.99289 1.20263 1.02404 1.00010 0.84604 1.21974 0.99631 0.99276 0.92307 0.90926 1.21443 0.98755 0.99045 0.94584 1.22180 1.00875 0.99373 0.95681 1.20790 0.87467 0.97245 0.90197 1.44038 1.49940 1.37887 0.99437 1.19213 1.11038 1.01865 1.06003 0.91752 1.25041 0.97223 0.97489 0.99884 1.70045 1.37769 1.29284 1.17548 0.86244 0.79073 0.83840 0.77762 1.20235 1.21736 1.21548 1.20858 0.89814 0.96373 0.90132 0.92571 0.90986 0.92605 0.75739 0.89953 0.89141 0.90588 0.91258 0.91050 0.90056 0.88875 0.88647 0.92544 0.93061 0.92784 0.93143 0.89585 0.96496 0.93709 0.96572 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.14 37.16 0.34 -1.75 16 2 C 0.15 2.22 2.16 -67.93 -0.15 2.07 16 3 H 0.09 1.47 7.58 -51.93 -0.39 1.07 16 4 N -0.70 -10.57 4.47 -54.59 -0.24 -10.82 16 5 C 0.60 9.46 7.81 -12.11 -0.09 9.36 16 6 O -0.53 -9.13 15.75 5.36 0.08 -9.05 16 7 C -0.02 -0.22 7.19 -82.82 -0.60 -0.82 16 8 N -0.33 -4.77 11.89 33.29 0.40 -4.37 16 9 O 0.13 1.57 11.18 19.20 0.21 1.79 16 10 C -0.04 -0.42 7.38 -35.38 -0.26 -0.68 16 11 C -0.15 -1.81 6.04 -104.92 -0.63 -2.45 16 12 C -0.04 -0.43 5.66 -27.91 -0.16 -0.59 16 13 C -0.12 -0.80 5.92 -26.39 -0.16 -0.96 16 14 C -0.12 -0.58 5.88 -26.45 -0.16 -0.74 16 15 C -0.03 -0.20 6.31 -27.70 -0.17 -0.37 16 16 C -0.11 -1.89 1.98 -90.50 -0.18 -2.07 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.10 -1.66 4.85 -26.67 -0.13 -1.79 16 19 C -0.14 -2.70 6.09 -26.60 -0.16 -2.86 16 20 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 21 N -0.59 -14.97 3.00 -172.32 -0.52 -15.48 16 22 C -0.25 -7.00 9.58 -15.06 -0.14 -7.14 16 23 H 0.06 1.77 7.89 -52.48 -0.41 1.36 16 24 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 25 N -0.90 -26.52 11.20 55.49 0.62 -25.90 16 26 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 30 C 0.16 3.31 5.55 -3.71 -0.02 3.29 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.86 6.41 -51.93 -0.33 0.52 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.41 6.01 8.19 -40.82 -0.33 5.68 16 35 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.09 1.01 7.83 -51.93 -0.41 0.61 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 39 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.72 6.37 -51.93 -0.33 0.39 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.05 1.08 7.44 -51.93 -0.39 0.69 16 LS Contribution 398.30 15.07 6.00 6.00 Total: -1.00 -32.11 398.30 -9.64 -41.74 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.39 Total: 2.60 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.78 Total: -3.47 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.26 Total: -56.57 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.30 Total: -7.26 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.11 -9.64 -41.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025541293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.281 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds