Wall clock time and date at job start Wed Apr 1 2020 04:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46954 * 2 1 4 4 N 1.46501 * 109.46858 * 240.00811 * 2 1 3 5 5 C 1.34776 * 120.00249 * 84.99666 * 4 2 1 6 6 O 1.21495 * 119.99708 * 0.02562 * 5 4 2 7 7 C 1.48330 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31496 * 127.15558 * 0.03164 * 7 5 4 9 9 O 1.21431 * 111.52721 * 179.97438 * 8 7 5 10 10 C 1.33184 * 111.56657 * 359.96291 * 9 8 7 11 11 C 1.35378 * 106.64006 * 359.80213 * 10 9 8 12 12 C 1.50064 * 124.93280 * 179.41157 * 11 10 9 13 13 C 1.53542 * 108.29985 * 344.49915 * 12 11 10 14 14 C 1.53109 * 109.50869 * 48.95843 * 13 12 11 15 15 C 1.50608 * 129.59817 * 180.19181 * 10 9 8 16 16 C 1.52992 * 109.47661 * 120.00559 * 2 1 3 17 17 H 1.09006 * 109.50035 * 180.02562 * 16 2 1 18 18 C 1.53040 * 109.52580 * 300.14540 * 16 2 1 19 19 C 1.53039 * 109.54198 * 181.32921 * 18 16 2 20 20 C 1.53622 * 109.24473 * 298.51455 * 19 18 16 21 21 N 1.46924 * 108.54399 * 54.84806 * 20 19 18 22 22 C 1.36946 * 120.62919 * 126.37114 * 21 20 19 23 23 H 1.08001 * 119.99879 * 207.53220 * 22 21 20 24 24 C 1.38814 * 119.99719 * 27.52961 * 22 21 20 25 25 N 1.31620 * 119.99709 * 25.84717 * 24 22 21 26 26 Si 1.86797 * 119.99712 * 205.56717 * 24 22 21 27 27 H 1.48493 * 109.47196 * 60.00574 * 26 24 22 28 28 H 1.48500 * 109.46719 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47268 * 299.99796 * 26 24 22 30 30 C 1.46928 * 118.74378 * 306.10142 * 21 20 19 31 31 H 1.09006 * 109.46656 * 299.99178 * 1 2 3 32 32 H 1.08994 * 109.47590 * 59.99276 * 1 2 3 33 33 H 1.08999 * 109.46590 * 180.02562 * 1 2 3 34 34 H 0.97001 * 119.99882 * 264.99312 * 4 2 1 35 35 H 1.08996 * 109.87144 * 224.67396 * 12 11 10 36 36 H 1.09000 * 109.51596 * 104.11116 * 12 11 10 37 37 H 1.09000 * 109.46739 * 288.94140 * 13 12 11 38 38 H 1.09004 * 109.45656 * 168.96124 * 13 12 11 39 39 H 1.09000 * 109.43043 * 170.06631 * 14 13 12 40 40 H 1.08993 * 109.43049 * 50.21490 * 14 13 12 41 41 H 1.08999 * 109.69428 * 282.91429 * 15 10 9 42 42 H 1.08998 * 109.69522 * 43.50111 * 15 10 9 43 43 H 1.08999 * 109.46221 * 301.35296 * 18 16 2 44 44 H 1.09003 * 109.45556 * 61.30999 * 18 16 2 45 45 H 1.09004 * 109.49499 * 58.58593 * 19 18 16 46 46 H 1.08994 * 109.49949 * 178.64805 * 19 18 16 47 47 H 1.09007 * 109.73672 * 295.11836 * 20 19 18 48 48 H 1.08997 * 109.67035 * 174.54572 * 20 19 18 49 49 H 0.96992 * 120.00366 * 4.05609 * 25 24 22 50 50 H 1.08992 * 109.58848 * 173.64203 * 30 21 20 51 51 H 1.08997 * 109.58525 * 294.06878 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0180 -2.3572 6 8 1.8584 1.1609 -2.4115 7 6 2.6418 -0.7170 -3.5683 8 7 2.9927 -1.9803 -3.6686 9 8 3.3556 -2.2539 -4.7946 10 6 3.2919 -1.1954 -5.6003 11 6 2.8278 -0.1665 -4.8527 12 6 2.6098 1.2307 -5.3549 13 6 3.3497 1.3836 -6.6915 14 6 3.0011 0.2065 -7.6065 15 6 3.6372 -1.0791 -7.0616 16 6 2.0401 -0.7213 1.2491 17 1 3.1302 -0.7211 1.2497 18 6 1.5277 -0.0031 2.4996 19 6 2.0649 -0.7047 3.7491 20 6 1.5501 -2.1518 3.7780 21 7 1.9189 -2.8043 2.5143 22 6 2.6074 -3.9881 2.5153 23 1 3.2477 -4.2411 1.6832 24 6 2.4823 -4.8628 3.5859 25 7 1.3919 -4.8492 4.3229 26 14 3.8584 -6.0644 3.9759 27 1 5.1039 -5.3118 4.2713 28 1 3.4816 -6.8819 5.1569 29 1 4.0831 -6.9553 2.8092 30 6 1.5298 -2.1658 1.2496 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3632 -1.0277 0.0005 34 1 2.2490 -1.6316 -1.1528 35 1 3.0006 1.9487 -4.6340 36 1 1.5436 1.4021 -5.5032 37 1 4.4247 1.3982 -6.5121 38 1 3.0484 2.3161 -7.1688 39 1 3.3808 0.4019 -8.6094 40 1 1.9185 0.0865 -7.6464 41 1 4.7197 -1.0324 -7.1807 42 1 3.2446 -1.9407 -7.6016 43 1 1.8690 1.0320 2.4894 44 1 0.4380 -0.0259 2.5105 45 1 3.1547 -0.7041 3.7265 46 1 1.7192 -0.1785 4.6388 47 1 0.4655 -2.1546 3.8877 48 1 2.0051 -2.6865 4.6117 49 1 0.6517 -4.2700 4.0832 50 1 1.9715 -2.7096 0.4146 51 1 0.4438 -2.1697 1.1572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025541294.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:06 Heat of formation + Delta-G solvation = 23.614608 kcal Electronic energy + Delta-G solvation = -31349.012758 eV Core-core repulsion = 27251.189984 eV Total energy + Delta-G solvation = -4097.822774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.29137 -39.97707 -38.28004 -37.90989 -35.42435 -34.15488 -33.18712 -31.29416 -31.21124 -30.41235 -30.36506 -28.18745 -25.57591 -25.10093 -24.53481 -23.41828 -23.08000 -22.24201 -20.83772 -20.42775 -19.69319 -18.73745 -18.05072 -17.82635 -17.34250 -16.68461 -15.92084 -15.43395 -15.05611 -14.65940 -14.52263 -14.37620 -14.24984 -14.17439 -13.81530 -13.58871 -13.56664 -13.49209 -13.35351 -12.85213 -12.74915 -12.59567 -12.21483 -12.04581 -11.69211 -11.63426 -11.42476 -11.36542 -11.07908 -11.05646 -10.84915 -10.59226 -10.43603 -10.43005 -10.26841 -10.17415 -10.04380 -9.90706 -9.81039 -9.35644 -9.26204 -9.06093 -8.35033 -6.86884 -6.09278 -3.22460 0.95172 1.45422 2.61817 2.94142 3.09012 3.49842 3.52897 3.70895 3.81205 4.19812 4.31641 4.39405 4.57579 4.61698 4.68818 4.81669 4.92633 5.01485 5.07299 5.11482 5.20398 5.29343 5.33630 5.34972 5.40390 5.46279 5.51942 5.57992 5.58675 5.59241 5.68406 5.73640 5.85034 5.87802 5.96058 6.01249 6.09208 6.10850 6.20954 6.34477 6.46771 6.49893 6.51440 6.65763 6.69339 6.81959 7.09751 7.20100 7.39175 7.82903 8.00117 8.06115 8.57544 9.11161 9.84667 10.29213 11.21014 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.002612 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.360652 B =10718.562171 C =12268.959587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 H 0.086 0.914 4 N -0.703 5.703 5 C 0.599 3.401 6 O -0.527 6.527 7 C -0.018 4.018 8 N -0.331 5.331 9 O 0.130 5.870 10 C -0.041 4.041 11 C -0.153 4.153 12 C -0.044 4.044 13 C -0.124 4.124 14 C -0.119 4.119 15 C -0.035 4.035 16 C -0.113 4.113 17 H 0.073 0.927 18 C -0.100 4.100 19 C -0.137 4.137 20 C 0.150 3.850 21 N -0.597 5.597 22 C -0.352 4.352 23 H 0.055 0.945 24 C -0.023 4.023 25 N -0.914 5.914 26 Si 1.064 2.936 27 H -0.293 1.293 28 H -0.285 1.285 29 H -0.293 1.293 30 C 0.153 3.847 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.409 0.591 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.017 0.983 48 H 0.078 0.922 49 H 0.269 0.731 50 H 0.049 0.951 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.450 12.773 -22.233 25.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 H 0.104 0.896 4 N -0.355 5.355 5 C 0.383 3.617 6 O -0.402 6.402 7 C -0.176 4.176 8 N -0.033 5.033 9 O 0.056 5.944 10 C -0.106 4.106 11 C -0.158 4.158 12 C -0.082 4.082 13 C -0.161 4.161 14 C -0.156 4.156 15 C -0.073 4.073 16 C -0.134 4.134 17 H 0.092 0.908 18 C -0.138 4.138 19 C -0.176 4.176 20 C 0.024 3.976 21 N -0.321 5.321 22 C -0.481 4.481 23 H 0.073 0.927 24 C -0.225 4.225 25 N -0.554 5.554 26 Si 0.894 3.106 27 H -0.221 1.221 28 H -0.211 1.211 29 H -0.220 1.220 30 C 0.027 3.973 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.246 0.754 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.035 0.965 48 H 0.097 0.903 49 H 0.080 0.920 50 H 0.067 0.933 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.752 11.405 -20.239 23.394 hybrid contribution -0.442 1.261 -1.362 1.908 sum 2.310 12.666 -21.601 25.147 Atomic orbital electron populations 1.22268 0.95126 1.02824 1.02131 1.21114 0.94362 0.96781 0.83180 0.89629 1.46127 1.65399 1.14859 1.09124 1.16846 0.77795 0.85774 0.81330 1.90759 1.50497 1.14595 1.84349 1.23086 1.06368 0.91235 0.96887 1.74642 1.13692 1.16029 0.98919 1.84707 1.61067 1.34470 1.14136 1.24151 1.03588 0.86118 0.96703 1.20646 1.05013 0.98983 0.91161 1.19991 1.01530 0.90127 0.96503 1.21724 1.00902 0.98570 0.94939 1.21655 1.01564 0.93127 0.99292 1.20268 1.02370 1.00068 0.84571 1.21950 1.00954 0.98083 0.92413 0.90825 1.21430 1.00315 0.97655 0.94435 1.22134 1.00790 0.98717 0.95988 1.21053 0.96220 0.89978 0.90389 1.44090 1.65905 1.22923 0.99154 1.19950 1.22502 0.96295 1.09347 0.92716 1.25836 1.00978 0.98743 0.96983 1.70790 1.03282 1.37906 1.43459 0.83531 0.75159 0.75747 0.76173 1.22073 1.21085 1.21961 1.20955 0.96293 0.90003 0.90077 0.91075 0.92694 0.91652 0.75419 0.89227 0.89924 0.91322 0.90576 0.90017 0.90993 0.88667 0.88795 0.93163 0.92090 0.92397 0.92952 0.96539 0.90346 0.92025 0.93290 0.95922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 8.79 37.16 0.33 -2.03 16 2 C 0.15 2.27 2.41 -67.93 -0.16 2.11 16 3 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 4 N -0.70 -10.83 5.00 -54.60 -0.27 -11.10 16 5 C 0.60 9.38 7.81 -12.11 -0.09 9.28 16 6 O -0.53 -8.96 15.75 5.37 0.08 -8.88 16 7 C -0.02 -0.25 7.19 -82.82 -0.60 -0.85 16 8 N -0.33 -4.80 11.89 33.29 0.40 -4.41 16 9 O 0.13 1.59 11.18 19.20 0.21 1.81 16 10 C -0.04 -0.41 7.38 -35.37 -0.26 -0.67 16 11 C -0.15 -1.78 6.05 -104.91 -0.63 -2.41 16 12 C -0.04 -0.41 5.66 -27.91 -0.16 -0.57 16 13 C -0.12 -0.74 5.92 -26.39 -0.16 -0.89 16 14 C -0.12 -0.56 5.88 -26.45 -0.16 -0.71 16 15 C -0.03 -0.19 6.31 -27.70 -0.17 -0.36 16 16 C -0.11 -1.94 2.33 -90.50 -0.21 -2.15 16 17 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 18 C -0.10 -1.64 4.77 -26.69 -0.13 -1.77 16 19 C -0.14 -2.57 6.10 -26.39 -0.16 -2.73 16 20 C 0.15 3.48 4.72 -3.49 -0.02 3.46 16 21 N -0.60 -14.84 2.85 -172.05 -0.49 -15.33 16 22 C -0.35 -9.84 9.49 -15.05 -0.14 -9.98 16 23 H 0.06 1.55 7.95 -52.49 -0.42 1.13 16 24 C -0.02 -0.66 4.66 -17.43 -0.08 -0.74 16 25 N -0.91 -27.42 12.46 55.49 0.69 -26.72 16 26 Si 1.06 25.45 29.99 -169.99 -5.10 20.35 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 C 0.15 3.15 5.29 -3.71 -0.02 3.13 16 31 H 0.07 0.94 6.46 -51.93 -0.34 0.60 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.98 6.32 -51.93 -0.33 0.65 16 34 H 0.41 6.45 6.74 -40.82 -0.28 6.17 16 35 H 0.09 0.94 7.84 -51.93 -0.41 0.54 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 41 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.97 6.50 -51.93 -0.34 0.63 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.02 0.39 7.87 -51.93 -0.41 -0.02 16 48 H 0.08 2.06 6.31 -51.93 -0.33 1.73 16 49 H 0.27 8.11 6.69 -40.82 -0.27 7.84 16 50 H 0.05 1.02 6.52 -51.93 -0.34 0.68 16 51 H 0.02 0.47 6.18 -51.93 -0.32 0.15 16 LS Contribution 391.78 15.07 5.90 5.90 Total: -1.00 -32.36 391.78 -9.42 -41.79 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -8.03 Total: 4.46 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.83 Total: -7.88 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.32 Total: -57.56 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.30 Total: -7.07 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.10 Total: 20.35 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.36 -9.42 -41.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025541294.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.401 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds