Wall clock time and date at job start Wed Apr 1 2020 04:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46954 * 2 1 4 4 N 1.46501 * 109.46858 * 240.00811 * 2 1 3 5 5 C 1.34776 * 120.00249 * 84.99666 * 4 2 1 6 6 O 1.21495 * 119.99708 * 0.02562 * 5 4 2 7 7 C 1.48330 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31496 * 127.15558 * 0.03164 * 7 5 4 9 9 O 1.21431 * 111.52721 * 179.97438 * 8 7 5 10 10 C 1.33184 * 111.56657 * 359.96291 * 9 8 7 11 11 C 1.35378 * 106.64006 * 359.80213 * 10 9 8 12 12 C 1.50064 * 124.93280 * 179.41157 * 11 10 9 13 13 C 1.53542 * 108.29985 * 344.49915 * 12 11 10 14 14 C 1.53109 * 109.50869 * 48.95843 * 13 12 11 15 15 C 1.50608 * 129.59817 * 180.19181 * 10 9 8 16 16 C 1.52992 * 109.47661 * 120.00559 * 2 1 3 17 17 H 1.09006 * 109.50035 * 180.02562 * 16 2 1 18 18 C 1.53040 * 109.52580 * 300.14540 * 16 2 1 19 19 C 1.53039 * 109.54198 * 181.32921 * 18 16 2 20 20 C 1.53622 * 109.24473 * 298.51455 * 19 18 16 21 21 N 1.46924 * 108.54399 * 54.84806 * 20 19 18 22 22 C 1.36946 * 120.62919 * 126.37114 * 21 20 19 23 23 H 1.08001 * 119.99879 * 207.53220 * 22 21 20 24 24 C 1.38814 * 119.99719 * 27.52961 * 22 21 20 25 25 N 1.31620 * 119.99709 * 25.84717 * 24 22 21 26 26 Si 1.86797 * 119.99712 * 205.56717 * 24 22 21 27 27 H 1.48493 * 109.47196 * 60.00574 * 26 24 22 28 28 H 1.48500 * 109.46719 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47268 * 299.99796 * 26 24 22 30 30 C 1.46928 * 118.74378 * 306.10142 * 21 20 19 31 31 H 1.09006 * 109.46656 * 299.99178 * 1 2 3 32 32 H 1.08994 * 109.47590 * 59.99276 * 1 2 3 33 33 H 1.08999 * 109.46590 * 180.02562 * 1 2 3 34 34 H 0.97001 * 119.99882 * 264.99312 * 4 2 1 35 35 H 1.08996 * 109.87144 * 224.67396 * 12 11 10 36 36 H 1.09000 * 109.51596 * 104.11116 * 12 11 10 37 37 H 1.09000 * 109.46739 * 288.94140 * 13 12 11 38 38 H 1.09004 * 109.45656 * 168.96124 * 13 12 11 39 39 H 1.09000 * 109.43043 * 170.06631 * 14 13 12 40 40 H 1.08993 * 109.43049 * 50.21490 * 14 13 12 41 41 H 1.08999 * 109.69428 * 282.91429 * 15 10 9 42 42 H 1.08998 * 109.69522 * 43.50111 * 15 10 9 43 43 H 1.08999 * 109.46221 * 301.35296 * 18 16 2 44 44 H 1.09003 * 109.45556 * 61.30999 * 18 16 2 45 45 H 1.09004 * 109.49499 * 58.58593 * 19 18 16 46 46 H 1.08994 * 109.49949 * 178.64805 * 19 18 16 47 47 H 1.09007 * 109.73672 * 295.11836 * 20 19 18 48 48 H 1.08997 * 109.67035 * 174.54572 * 20 19 18 49 49 H 0.96992 * 120.00366 * 4.05609 * 25 24 22 50 50 H 1.08992 * 109.58848 * 173.64203 * 30 21 20 51 51 H 1.08997 * 109.58525 * 294.06878 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0180 -2.3572 6 8 1.8584 1.1609 -2.4115 7 6 2.6418 -0.7170 -3.5683 8 7 2.9927 -1.9803 -3.6686 9 8 3.3556 -2.2539 -4.7946 10 6 3.2919 -1.1954 -5.6003 11 6 2.8278 -0.1665 -4.8527 12 6 2.6098 1.2307 -5.3549 13 6 3.3497 1.3836 -6.6915 14 6 3.0011 0.2065 -7.6065 15 6 3.6372 -1.0791 -7.0616 16 6 2.0401 -0.7213 1.2491 17 1 3.1302 -0.7211 1.2497 18 6 1.5277 -0.0031 2.4996 19 6 2.0649 -0.7047 3.7491 20 6 1.5501 -2.1518 3.7780 21 7 1.9189 -2.8043 2.5143 22 6 2.6074 -3.9881 2.5153 23 1 3.2477 -4.2411 1.6832 24 6 2.4823 -4.8628 3.5859 25 7 1.3919 -4.8492 4.3229 26 14 3.8584 -6.0644 3.9759 27 1 5.1039 -5.3118 4.2713 28 1 3.4816 -6.8819 5.1569 29 1 4.0831 -6.9553 2.8092 30 6 1.5298 -2.1658 1.2496 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3632 -1.0277 0.0005 34 1 2.2490 -1.6316 -1.1528 35 1 3.0006 1.9487 -4.6340 36 1 1.5436 1.4021 -5.5032 37 1 4.4247 1.3982 -6.5121 38 1 3.0484 2.3161 -7.1688 39 1 3.3808 0.4019 -8.6094 40 1 1.9185 0.0865 -7.6464 41 1 4.7197 -1.0324 -7.1807 42 1 3.2446 -1.9407 -7.6016 43 1 1.8690 1.0320 2.4894 44 1 0.4380 -0.0259 2.5105 45 1 3.1547 -0.7041 3.7265 46 1 1.7192 -0.1785 4.6388 47 1 0.4655 -2.1546 3.8877 48 1 2.0051 -2.6865 4.6117 49 1 0.6517 -4.2700 4.0832 50 1 1.9715 -2.7096 0.4146 51 1 0.4438 -2.1697 1.1572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025541294.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:05 Heat of formation + Delta-G solvation = 4.657804 kcal Electronic energy + Delta-G solvation = -31349.834787 eV Core-core repulsion = 27251.189984 eV Total energy + Delta-G solvation = -4098.644802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.26253 -41.27012 -39.72581 -38.60716 -36.99672 -35.20913 -34.78439 -32.56628 -32.27867 -32.01960 -31.16138 -29.64470 -27.12372 -26.61654 -25.38963 -24.68618 -23.95846 -23.76406 -22.22352 -21.61811 -20.60937 -20.23110 -19.41167 -19.02143 -18.69415 -17.78548 -17.18860 -16.42964 -16.35950 -16.05056 -16.01336 -15.61034 -15.47932 -15.27864 -15.03545 -14.87085 -14.79730 -14.46380 -14.32049 -14.21170 -13.98564 -13.77479 -13.63626 -13.27575 -13.00225 -12.82010 -12.66405 -12.52259 -12.19239 -12.01758 -11.94207 -11.89545 -11.88444 -11.79278 -11.72392 -11.63816 -11.49048 -11.35332 -11.27461 -11.12956 -10.46614 -10.33460 -10.16116 -8.93529 -8.30002 -5.41993 -0.06757 0.57166 1.54998 1.62120 1.69910 1.81279 1.91874 1.93600 2.61752 2.77947 3.17388 3.37069 3.45584 3.61177 3.75061 3.80312 3.88881 3.90254 3.98420 4.04851 4.18223 4.20369 4.25551 4.28362 4.35498 4.46491 4.46738 4.49641 4.56552 4.66956 4.67898 4.80402 4.85502 4.87478 4.91701 4.97055 4.99820 5.03837 5.09899 5.15671 5.17802 5.18064 5.22441 5.29418 5.31754 5.33681 5.42793 5.51764 5.79954 6.14558 6.36645 6.75611 6.94887 7.03363 7.75273 8.19404 8.96616 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.002612 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.360652 B =10718.562171 C =12268.959587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.157 3.843 3 H 0.092 0.908 4 N -0.705 5.705 5 C 0.599 3.401 6 O -0.544 6.544 7 C -0.043 4.043 8 N -0.360 5.360 9 O 0.131 5.869 10 C -0.024 4.024 11 C -0.170 4.170 12 C -0.044 4.044 13 C -0.119 4.119 14 C -0.115 4.115 15 C -0.036 4.036 16 C -0.098 4.098 17 H 0.060 0.940 18 C -0.096 4.096 19 C -0.127 4.127 20 C 0.153 3.847 21 N -0.616 5.616 22 C -0.358 4.358 23 H 0.046 0.954 24 C -0.073 4.073 25 N -0.939 5.939 26 Si 1.113 2.887 27 H -0.281 1.281 28 H -0.290 1.290 29 H -0.277 1.277 30 C 0.154 3.846 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.078 0.922 47 H 0.008 0.992 48 H 0.042 0.958 49 H 0.255 0.745 50 H 0.038 0.962 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.350 14.172 -24.639 28.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.053 3.947 3 H 0.110 0.890 4 N -0.356 5.356 5 C 0.384 3.616 6 O -0.420 6.420 7 C -0.200 4.200 8 N -0.062 5.062 9 O 0.056 5.944 10 C -0.089 4.089 11 C -0.176 4.176 12 C -0.082 4.082 13 C -0.157 4.157 14 C -0.153 4.153 15 C -0.073 4.073 16 C -0.118 4.118 17 H 0.079 0.921 18 C -0.134 4.134 19 C -0.166 4.166 20 C 0.027 3.973 21 N -0.341 5.341 22 C -0.488 4.488 23 H 0.064 0.936 24 C -0.270 4.270 25 N -0.581 5.581 26 Si 0.937 3.063 27 H -0.207 1.207 28 H -0.215 1.215 29 H -0.203 1.203 30 C 0.029 3.971 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.242 0.758 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.087 0.913 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.097 0.903 47 H 0.025 0.975 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.057 0.943 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.647 12.837 -22.662 26.300 hybrid contribution -0.736 0.831 -0.710 1.317 sum 2.911 13.668 -23.372 27.231 Atomic orbital electron populations 1.22215 0.94169 1.02321 1.02979 1.21040 0.94955 0.96536 0.82144 0.88982 1.46166 1.65453 1.14663 1.09365 1.17025 0.77338 0.85623 0.81662 1.90732 1.51366 1.15215 1.84731 1.23135 1.07599 0.91744 0.97514 1.74625 1.15001 1.16356 1.00200 1.84664 1.60513 1.35323 1.13867 1.25021 1.01163 0.84578 0.98100 1.20999 1.05701 1.00546 0.90344 1.20054 1.01760 0.88340 0.98006 1.21735 1.00530 1.00167 0.93237 1.21699 1.01488 0.91822 1.00255 1.20643 1.03908 1.01458 0.81304 1.21730 0.99997 0.95912 0.94194 0.92145 1.21436 1.00857 0.98812 0.92286 1.22003 1.00148 0.95854 0.98573 1.20962 0.95405 0.92342 0.88586 1.44327 1.66131 1.22633 1.00985 1.20165 1.22190 0.97398 1.09046 0.93644 1.27146 1.02198 1.00516 0.97144 1.70905 1.03841 1.38899 1.44453 0.82882 0.72983 0.74213 0.76206 1.20691 1.21548 1.20317 1.21033 0.96262 0.91824 0.87997 0.89443 0.92603 0.92763 0.75805 0.91084 0.90282 0.91043 0.88929 0.86978 0.91342 0.86489 0.86648 0.89893 0.91107 0.93272 0.90335 0.97451 0.93963 0.93536 0.94311 0.95824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 8.79 71.98 0.63 -3.73 16 2 C 0.16 4.65 2.41 44.99 0.11 4.76 16 3 H 0.09 2.68 7.58 -2.38 -0.02 2.66 16 4 N -0.71 -22.05 5.00 -444.95 -2.22 -24.27 16 5 C 0.60 19.10 7.81 86.93 0.68 19.78 16 6 O -0.54 -18.64 15.75 -3.70 -0.06 -18.69 16 7 C -0.04 -1.27 7.19 42.55 0.31 -0.97 16 8 N -0.36 -10.66 11.89 -48.94 -0.58 -11.24 16 9 O 0.13 3.15 11.18 78.74 0.88 4.03 16 10 C -0.02 -0.44 7.38 25.00 0.18 -0.25 16 11 C -0.17 -3.89 6.05 -20.05 -0.12 -4.01 16 12 C -0.04 -0.79 5.66 29.83 0.17 -0.62 16 13 C -0.12 -1.13 5.92 30.81 0.18 -0.94 16 14 C -0.12 -0.67 5.88 30.78 0.18 -0.49 16 15 C -0.04 -0.27 6.31 29.96 0.19 -0.08 16 16 C -0.10 -3.29 2.33 -10.72 -0.02 -3.31 16 17 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 18 C -0.10 -2.94 4.77 30.62 0.15 -2.79 16 19 C -0.13 -4.61 6.10 30.82 0.19 -4.42 16 20 C 0.15 7.24 4.72 86.51 0.41 7.65 16 21 N -0.62 -31.37 2.85 -698.25 -1.99 -33.36 16 22 C -0.36 -20.56 9.49 84.03 0.80 -19.76 16 23 H 0.05 2.64 7.95 -2.91 -0.02 2.62 16 24 C -0.07 -4.26 4.66 84.86 0.40 -3.86 16 25 N -0.94 -58.02 12.46 21.65 0.27 -57.75 16 26 Si 1.11 52.12 29.99 68.60 2.06 54.18 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 28 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 30 C 0.15 6.45 5.29 86.36 0.46 6.91 16 31 H 0.09 2.11 6.46 -2.38 -0.02 2.09 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.60 6.32 -2.39 -0.02 1.59 16 34 H 0.41 13.27 6.74 -92.71 -0.62 12.65 16 35 H 0.07 1.52 7.84 -2.39 -0.02 1.50 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 38 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 41 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.12 0.46 8.14 -2.39 -0.02 0.45 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.07 2.06 6.50 -2.39 -0.02 2.05 16 45 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.01 0.36 7.87 -2.38 -0.02 0.35 16 48 H 0.04 2.29 6.31 -2.39 -0.02 2.27 16 49 H 0.25 16.00 6.69 -92.71 -0.62 15.38 16 50 H 0.04 1.67 6.52 -2.39 -0.02 1.65 16 51 H 0.02 1.00 6.18 -2.39 -0.01 0.98 16 Total: -1.00 -73.28 391.78 3.71 -69.57 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.47 Total: 23.69 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 4.88 Total: -6.14 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -4.52 Total: -126.63 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.82 Total: -14.67 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.06 Total: 54.18 kcal Total: -73.28 3.71 -69.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025541294.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.230 kcal (2) G-P(sol) polarization free energy of solvation -73.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds