Wall clock time and date at job start Wed Apr 1 2020 04:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46804 * 2 1 4 4 N 1.46501 * 109.46718 * 240.00651 * 2 1 3 5 5 C 1.34773 * 120.00256 * 85.00459 * 4 2 1 6 6 O 1.21609 * 120.00208 * 359.97438 * 5 4 2 7 7 C 1.47416 * 120.00260 * 179.97438 * 5 4 2 8 8 C 1.36095 * 126.45110 * 180.02562 * 7 5 4 9 9 O 1.34260 * 106.95049 * 179.97438 * 8 7 5 10 10 C 1.34051 * 108.22533 * 0.02562 * 9 8 7 11 11 C 1.50703 * 125.37771 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.46789 * 270.02077 * 11 10 9 13 13 C 1.52994 * 117.49944 * 243.62195 * 12 11 10 14 14 C 1.52994 * 117.49952 * 174.99678 * 12 11 10 15 15 N 1.29939 * 109.24379 * 359.72149 * 10 9 8 16 16 C 1.52993 * 109.47334 * 120.00657 * 2 1 3 17 17 H 1.08999 * 109.50168 * 59.93134 * 16 2 1 18 18 C 1.53051 * 109.52109 * 299.85274 * 16 2 1 19 19 C 1.53040 * 109.53536 * 178.66961 * 18 16 2 20 20 C 1.52759 * 109.38545 * 61.23641 * 19 18 16 21 21 N 1.46923 * 109.01237 * 305.59084 * 20 19 18 22 22 C 1.36935 * 120.62889 * 233.58434 * 21 20 19 23 23 H 1.07998 * 119.99964 * 152.10883 * 22 21 20 24 24 C 1.38806 * 119.99901 * 332.09815 * 22 21 20 25 25 N 1.31623 * 120.00510 * 335.27507 * 24 22 21 26 26 Si 1.86803 * 120.00033 * 154.99824 * 24 22 21 27 27 H 1.48499 * 109.47244 * 89.99976 * 26 24 22 28 28 H 1.48497 * 109.47129 * 210.00254 * 26 24 22 29 29 H 1.48505 * 109.46806 * 330.00107 * 26 24 22 30 30 C 1.46923 * 118.73676 * 53.30433 * 21 20 19 31 31 H 1.08999 * 109.46657 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46989 * 299.99339 * 1 2 3 33 33 H 1.09001 * 109.46941 * 59.99785 * 1 2 3 34 34 H 0.96998 * 119.99895 * 264.99633 * 4 2 1 35 35 H 1.07995 * 126.52426 * 0.02562 * 8 7 5 36 36 H 1.09001 * 109.47220 * 30.01319 * 11 10 9 37 37 H 1.08995 * 109.47196 * 150.02121 * 11 10 9 38 38 H 1.09002 * 115.54709 * 29.32634 * 12 11 10 39 39 H 1.09003 * 117.49646 * 359.97438 * 13 12 11 40 40 H 1.09003 * 117.50145 * 145.02032 * 13 12 11 41 41 H 1.09004 * 117.50134 * 214.97599 * 14 12 11 42 42 H 1.08999 * 117.49771 * 0.02562 * 14 12 11 43 43 H 1.08990 * 109.45897 * 298.68739 * 18 16 2 44 44 H 1.09000 * 109.45851 * 58.64847 * 18 16 2 45 45 H 1.08998 * 109.49326 * 181.31985 * 19 18 16 46 46 H 1.09008 * 109.49676 * 301.38061 * 19 18 16 47 47 H 1.09000 * 109.50763 * 185.70096 * 20 19 18 48 48 H 1.09006 * 109.42391 * 65.42647 * 20 19 18 49 49 H 0.97000 * 119.99468 * 353.97254 * 25 24 22 50 50 H 1.09006 * 109.58528 * 66.43357 * 30 21 20 51 51 H 1.09001 * 109.58720 * 186.85647 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1471 -0.0181 -2.3572 6 8 1.8575 1.1618 -2.4118 7 6 2.6389 -0.7127 -3.5608 8 6 2.8190 -0.1651 -4.7936 9 8 3.2785 -1.1415 -5.5923 10 6 3.3781 -2.2645 -4.8670 11 6 3.8561 -3.5972 -5.3833 12 6 2.6635 -4.3966 -5.9124 13 6 2.3184 -5.7056 -5.1995 14 6 2.9561 -5.7367 -6.5900 15 7 3.0035 -2.0208 -3.6469 16 6 2.0401 -0.7213 1.2491 17 1 1.6760 -1.7487 1.2501 18 6 1.5336 0.0012 2.4996 19 6 2.0160 -0.7391 3.7491 20 6 3.5433 -0.7434 3.7779 21 7 4.0443 -1.3013 2.5144 22 6 4.9301 -2.3456 2.5155 23 1 4.9568 -3.0320 1.6821 24 6 5.7939 -2.5218 3.5877 25 7 6.1263 -1.4948 4.3408 26 14 6.4786 -4.2180 3.9665 27 1 7.7523 -4.4139 3.2286 28 1 6.7285 -4.3364 5.4255 29 1 5.4991 -5.2522 3.5466 30 6 3.5720 -0.7216 1.2497 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6316 -1.1528 35 1 2.6293 0.8600 -5.0755 36 1 4.5733 -3.4388 -6.1887 37 1 4.3340 -4.1499 -4.5746 38 1 1.8373 -3.8039 -6.3049 39 1 2.9412 -5.9975 -4.3539 40 1 1.2649 -5.9744 -5.1229 41 1 2.3221 -6.0260 -7.4281 42 1 3.9981 -6.0491 -6.6585 43 1 1.9182 1.0209 2.5105 44 1 0.4439 0.0244 2.4893 45 1 1.6355 -0.2374 4.6388 46 1 1.6517 -1.7663 3.7268 47 1 3.8900 -1.3554 4.6106 48 1 3.9066 0.2776 3.8960 49 1 5.8391 -0.6011 4.0964 50 1 3.9376 0.3011 1.1574 51 1 3.9376 -1.3193 0.4147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025582673.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:49 Heat of formation + Delta-G solvation = -6.803143 kcal Electronic energy + Delta-G solvation = -30869.668244 eV Core-core repulsion = 26770.526458 eV Total energy + Delta-G solvation = -4099.141786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.52832 -41.05680 -39.57574 -38.49988 -36.96449 -36.00136 -34.83945 -32.99278 -32.41884 -32.17014 -29.93216 -28.97278 -27.11620 -25.87996 -24.39347 -23.80285 -23.23123 -23.01071 -22.15190 -21.60594 -21.38890 -20.72574 -19.43103 -19.16041 -17.89748 -17.65366 -17.27207 -16.70581 -16.38306 -16.17708 -15.90268 -15.57951 -15.45198 -15.36298 -15.18052 -14.93534 -14.80890 -14.55676 -14.27953 -14.03549 -13.86513 -13.76777 -13.50643 -12.95434 -12.79924 -12.71005 -12.63167 -12.36214 -12.34367 -12.29526 -11.96606 -11.92779 -11.88027 -11.75352 -11.65835 -11.53351 -11.31807 -11.23364 -11.09261 -10.91126 -10.48822 -10.28305 -10.01160 -8.94892 -8.26055 -5.41663 0.00478 0.87641 1.48867 1.56764 1.65220 1.82880 1.99871 2.16363 2.64132 2.73711 2.90753 3.19261 3.41135 3.58769 3.72376 3.77511 3.79076 3.89876 3.94594 4.00029 4.09475 4.20966 4.24360 4.32937 4.37251 4.42080 4.48915 4.55951 4.61427 4.66746 4.71679 4.72548 4.75382 4.82270 4.85126 4.90715 4.97214 5.00502 5.08442 5.10027 5.15164 5.19130 5.24767 5.25317 5.29813 5.36593 5.42781 5.54332 5.81290 6.24027 6.37308 6.52483 7.00162 7.04283 7.76792 8.20982 8.98079 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008483 B = 0.003049 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3299.863071 B = 9181.833571 C =11346.933717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.072 0.928 4 N -0.699 5.699 5 C 0.601 3.399 6 O -0.568 6.568 7 C -0.103 4.103 8 C 0.029 3.971 9 O -0.192 6.192 10 C 0.207 3.793 11 C 0.008 3.992 12 C -0.162 4.162 13 C -0.186 4.186 14 C -0.156 4.156 15 N -0.481 5.481 16 C -0.094 4.094 17 H 0.073 0.927 18 C -0.097 4.097 19 C -0.126 4.126 20 C 0.152 3.848 21 N -0.616 5.616 22 C -0.355 4.355 23 H 0.049 0.951 24 C -0.076 4.076 25 N -0.943 5.943 26 Si 1.116 2.884 27 H -0.284 1.284 28 H -0.288 1.288 29 H -0.274 1.274 30 C 0.159 3.841 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.410 0.590 35 H 0.258 0.742 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.055 0.945 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.055 0.945 47 H 0.044 0.956 48 H -0.001 1.001 49 H 0.253 0.747 50 H -0.002 1.002 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.447 -3.963 -21.877 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.090 0.910 4 N -0.349 5.349 5 C 0.387 3.613 6 O -0.448 6.448 7 C -0.222 4.222 8 C -0.046 4.046 9 O -0.078 6.078 10 C -0.002 4.002 11 C -0.030 4.030 12 C -0.181 4.181 13 C -0.223 4.223 14 C -0.193 4.193 15 N -0.211 5.211 16 C -0.114 4.114 17 H 0.091 0.909 18 C -0.135 4.135 19 C -0.165 4.165 20 C 0.026 3.974 21 N -0.340 5.340 22 C -0.484 4.484 23 H 0.067 0.933 24 C -0.272 4.272 25 N -0.585 5.585 26 Si 0.940 3.060 27 H -0.210 1.210 28 H -0.214 1.214 29 H -0.199 1.199 30 C 0.034 3.966 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.246 0.754 35 H 0.274 0.726 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.017 0.983 49 H 0.062 0.938 50 H 0.016 0.984 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.721 -4.465 -20.344 23.426 hybrid contribution -0.396 1.393 -1.244 1.909 sum -11.117 -3.072 -21.588 24.476 Atomic orbital electron populations 1.22130 0.93056 1.02872 1.02933 1.21008 0.95347 0.96191 0.82561 0.90952 1.45929 1.65257 1.14691 1.08976 1.16953 0.76843 0.85254 0.82220 1.90774 1.52962 1.15740 1.85349 1.21764 1.12082 0.91788 0.96528 1.25784 0.95886 0.95034 0.87858 1.84426 1.63735 1.18572 1.41044 1.26802 0.98709 0.90102 0.84634 1.19945 0.97406 0.82889 1.02740 1.22072 0.99515 0.90469 1.06059 1.23151 1.02189 1.00165 0.96804 1.23108 1.03070 0.97315 0.95770 1.70768 1.15945 1.14227 1.20132 1.21728 0.95704 0.99884 0.94091 0.90875 1.21454 1.01312 0.98178 0.92510 1.21853 0.95536 1.00514 0.98551 1.20789 0.93211 0.94667 0.88720 1.44339 1.50172 1.38605 1.00912 1.20222 1.14737 1.04440 1.09050 0.93347 1.27227 0.95648 1.07309 0.97041 1.70874 1.44677 0.99371 1.43541 0.82868 0.75756 0.71337 0.76024 1.21034 1.21438 1.19946 1.20903 0.93130 0.94488 0.88105 0.91608 0.89408 0.92900 0.75410 0.72614 0.85732 0.86960 0.88171 0.88482 0.88792 0.87538 0.87080 0.92617 0.88843 0.90402 0.92603 0.93779 0.98329 0.93763 0.98384 0.93973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.14 71.98 0.66 -2.93 16 2 C 0.15 4.51 2.16 44.99 0.10 4.61 16 3 H 0.07 2.38 7.58 -2.39 -0.02 2.36 16 4 N -0.70 -21.13 4.47 -445.82 -1.99 -23.12 16 5 C 0.60 18.77 7.78 86.66 0.67 19.44 16 6 O -0.57 -19.84 16.55 -4.06 -0.07 -19.91 16 7 C -0.10 -2.80 6.99 40.41 0.28 -2.52 16 8 C 0.03 0.60 11.95 67.32 0.80 1.40 16 9 O -0.19 -3.79 10.73 0.34 0.00 -3.79 16 10 C 0.21 4.31 7.51 88.39 0.66 4.97 16 11 C 0.01 0.10 6.12 29.85 0.18 0.29 16 12 C -0.16 -2.03 5.72 -10.80 -0.06 -2.10 16 13 C -0.19 -2.39 10.18 30.59 0.31 -2.08 16 14 C -0.16 -1.41 10.25 30.59 0.31 -1.10 16 15 N -0.48 -12.85 11.06 -293.03 -3.24 -16.09 16 16 C -0.09 -3.11 1.97 -10.72 -0.02 -3.13 16 17 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 18 C -0.10 -2.96 4.86 30.62 0.15 -2.81 16 19 C -0.13 -4.54 6.06 30.53 0.19 -4.36 16 20 C 0.15 7.32 4.66 86.22 0.40 7.73 16 21 N -0.62 -31.87 2.86 -699.94 -2.00 -33.87 16 22 C -0.35 -20.40 9.49 84.03 0.80 -19.60 16 23 H 0.05 2.79 7.94 -2.91 -0.02 2.77 16 24 C -0.08 -4.43 4.69 84.86 0.40 -4.03 16 25 N -0.94 -58.77 12.40 21.65 0.27 -58.50 16 26 Si 1.12 51.68 29.99 68.60 2.06 53.73 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 28 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 30 C 0.16 6.97 5.56 86.36 0.48 7.45 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.77 6.41 -2.39 -0.02 1.75 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.41 12.40 8.14 -92.71 -0.76 11.64 16 35 H 0.26 3.59 8.06 -2.91 -0.02 3.56 16 36 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 1.51 7.87 -2.39 -0.02 1.49 16 38 H 0.10 1.39 8.07 -2.39 -0.02 1.37 16 39 H 0.10 1.32 8.03 -2.39 -0.02 1.30 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.09 2.22 6.37 -2.39 -0.02 2.20 16 45 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 47 H 0.04 2.41 6.30 -2.39 -0.02 2.39 16 48 H 0.00 -0.06 7.87 -2.38 -0.02 -0.08 16 49 H 0.25 16.16 6.71 -92.71 -0.62 15.54 16 50 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 51 H 0.04 1.90 7.44 -2.39 -0.02 1.88 16 Total: -1.00 -74.42 410.81 1.67 -72.75 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.33 Total: 27.55 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 6.32 Total: 1.23 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -6.96 Total: -131.57 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.06 Total: -23.69 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.06 Total: 53.73 kcal Total: -74.42 1.67 -72.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025582673.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.949 kcal (2) G-P(sol) polarization free energy of solvation -74.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds