Wall clock time and date at job start Wed Apr 1 2020 04:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47137 * 2 1 4 4 N 1.46497 * 109.46947 * 239.99831 * 2 1 3 5 5 C 1.34775 * 119.99985 * 85.00661 * 4 2 1 6 6 O 1.21616 * 120.00249 * 359.97438 * 5 4 2 7 7 C 1.47422 * 120.00261 * 179.97438 * 5 4 2 8 8 C 1.36090 * 126.44958 * 179.68492 * 7 5 4 9 9 O 1.34254 * 106.94901 * 179.84413 * 8 7 5 10 10 C 1.34053 * 108.22754 * 0.42288 * 9 8 7 11 11 C 1.50704 * 125.38117 * 179.69436 * 10 9 8 12 12 C 1.53779 * 113.61258 * 37.54168 * 11 10 9 13 13 C 1.53780 * 87.08282 * 220.02046 * 12 11 10 14 14 C 1.53777 * 87.08121 * 25.43099 * 13 12 11 15 15 N 1.29934 * 109.24075 * 359.73327 * 10 9 8 16 16 C 1.52999 * 109.46905 * 120.00134 * 2 1 3 17 17 H 1.09000 * 109.49835 * 59.93159 * 16 2 1 18 18 C 1.53042 * 109.49740 * 299.83862 * 16 2 1 19 19 C 1.53034 * 109.54020 * 178.68298 * 18 16 2 20 20 C 1.53199 * 109.31349 * 61.36448 * 19 18 16 21 21 N 1.46925 * 108.77171 * 305.36664 * 20 19 18 22 22 C 1.36937 * 120.62885 * 233.58260 * 21 20 19 23 23 H 1.08007 * 120.00040 * 152.31096 * 22 21 20 24 24 C 1.38814 * 120.00113 * 332.31018 * 22 21 20 25 25 N 1.31613 * 119.99857 * 342.60082 * 24 22 21 26 26 Si 1.86798 * 119.99662 * 162.59947 * 24 22 21 27 27 H 1.48501 * 109.47517 * 94.35255 * 26 24 22 28 28 H 1.48508 * 109.46905 * 214.35099 * 26 24 22 29 29 H 1.48496 * 109.47683 * 334.34864 * 26 24 22 30 30 C 1.46924 * 118.74160 * 53.60940 * 21 20 19 31 31 H 1.08996 * 109.46969 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47056 * 300.00168 * 1 2 3 33 33 H 1.09007 * 109.46659 * 59.99671 * 1 2 3 34 34 H 0.96999 * 120.00434 * 264.99974 * 4 2 1 35 35 H 1.07998 * 126.52707 * 0.02562 * 8 7 5 36 36 H 1.08991 * 112.84769 * 168.84845 * 11 10 9 37 37 H 1.09004 * 113.61522 * 334.56754 * 12 11 10 38 38 H 1.08997 * 113.61521 * 105.46841 * 12 11 10 39 39 H 1.09001 * 113.61241 * 270.88962 * 13 12 11 40 40 H 1.08999 * 113.69235 * 139.98954 * 13 12 11 41 41 H 1.09002 * 113.61963 * 220.01965 * 14 13 12 42 42 H 1.09011 * 113.61724 * 89.11522 * 14 13 12 43 43 H 1.08996 * 109.45922 * 298.70503 * 18 16 2 44 44 H 1.09004 * 109.46060 * 58.65930 * 18 16 2 45 45 H 1.09001 * 109.49732 * 301.41657 * 19 18 16 46 46 H 1.09000 * 109.53044 * 181.33087 * 19 18 16 47 47 H 1.08994 * 109.58691 * 185.58293 * 20 19 18 48 48 H 1.08996 * 109.58762 * 65.14965 * 20 19 18 49 49 H 0.97001 * 119.99577 * 180.02562 * 25 24 22 50 50 H 1.09000 * 109.58934 * 186.60585 * 30 21 20 51 51 H 1.08994 * 109.58789 * 66.17253 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8576 1.1616 -2.4119 7 6 2.6391 -0.7131 -3.5607 8 6 2.8131 -0.1671 -4.7950 9 8 3.2778 -1.1422 -5.5923 10 6 3.3783 -2.2649 -4.8667 11 6 3.8550 -3.5980 -5.3832 12 6 5.0046 -3.4897 -6.3988 13 6 4.3121 -4.6159 -7.1843 14 6 2.9978 -4.1560 -6.5316 15 7 2.9989 -2.0224 -3.6479 16 6 2.0400 -0.7213 1.2492 17 1 1.6759 -1.7487 1.2503 18 6 1.5335 0.0020 2.4992 19 6 2.0157 -0.7375 3.7492 20 6 3.5474 -0.7381 3.7783 21 7 4.0441 -1.3006 2.5151 22 6 4.9306 -2.3442 2.5169 23 1 4.9569 -3.0319 1.6845 24 6 5.7956 -2.5183 3.5886 25 7 6.0153 -1.5260 4.4248 26 14 6.6476 -4.1610 3.8437 27 1 7.9886 -4.1274 3.2067 28 1 6.7970 -4.4204 5.2983 29 1 5.8346 -5.2411 3.2293 30 6 3.5719 -0.7217 1.2499 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 2.6177 0.8565 -5.0786 36 1 4.0405 -4.3186 -4.5869 37 1 5.0297 -2.5383 -6.9302 38 1 5.9750 -3.7741 -5.9918 39 1 4.6238 -5.6154 -6.8809 40 1 4.3357 -4.4748 -8.2649 41 1 2.3480 -4.9782 -6.2318 42 1 2.4742 -3.3866 -7.0993 43 1 1.9181 1.0218 2.5096 44 1 0.4437 0.0253 2.4888 45 1 1.6519 -1.7648 3.7272 46 1 1.6353 -0.2358 4.6389 47 1 3.8968 -1.3472 4.6119 48 1 3.9112 0.2831 3.8915 49 1 6.6200 -1.6476 5.1734 50 1 3.9375 -1.3200 0.4153 51 1 3.9376 0.3009 1.1570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025592080.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:35 Heat of formation + Delta-G solvation = -6.543284 kcal Electronic energy + Delta-G solvation = -30928.996788 eV Core-core repulsion = 26829.866270 eV Total energy + Delta-G solvation = -4099.130518 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.53698 -41.00598 -39.58268 -39.35746 -36.76082 -35.98943 -34.67981 -32.66596 -32.20279 -31.58450 -29.91801 -27.24759 -27.10299 -26.59294 -25.88112 -24.38931 -23.62904 -22.77938 -22.08581 -21.56162 -20.89127 -20.18088 -19.09321 -18.65976 -17.89034 -17.72586 -17.19671 -16.82154 -16.64211 -16.17937 -15.96842 -15.91089 -15.41643 -15.20301 -14.97606 -14.73835 -14.65988 -14.14979 -14.04725 -13.77465 -13.72751 -13.53533 -13.34277 -13.29493 -13.02844 -12.80121 -12.65178 -12.40924 -12.28200 -12.24930 -11.98890 -11.93980 -11.92964 -11.78342 -11.53885 -11.46254 -11.42723 -11.36431 -11.17222 -11.03201 -10.54845 -10.23969 -9.95981 -8.69322 -7.88480 -5.34089 0.02058 0.88211 1.44918 1.46175 1.49603 1.56867 2.03344 2.18995 2.49793 2.77729 3.25646 3.49958 3.53974 3.61731 3.65229 3.79942 3.90914 3.91365 3.98199 4.02269 4.05978 4.33541 4.40992 4.44185 4.48457 4.56069 4.61547 4.72020 4.74821 4.78270 4.83818 4.84790 4.86426 4.91225 4.96721 5.03928 5.04792 5.08997 5.10802 5.13908 5.22045 5.24847 5.31855 5.43312 5.48435 5.50274 5.55880 5.65651 5.77625 6.27206 6.37522 6.55606 7.04022 7.13553 7.84532 8.36605 9.17697 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.003009 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.484353 B = 9303.232950 C =11772.758633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.072 0.928 4 N -0.699 5.699 5 C 0.601 3.399 6 O -0.568 6.568 7 C -0.101 4.101 8 C 0.026 3.974 9 O -0.190 6.190 10 C 0.213 3.787 11 C -0.032 4.032 12 C -0.132 4.132 13 C -0.128 4.128 14 C -0.125 4.125 15 N -0.486 5.486 16 C -0.094 4.094 17 H 0.075 0.925 18 C -0.096 4.096 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.608 5.608 22 C -0.264 4.264 23 H 0.064 0.936 24 C -0.051 4.051 25 N -0.935 5.935 26 Si 0.967 3.033 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.268 1.268 30 C 0.157 3.843 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.410 0.590 35 H 0.258 0.742 36 H 0.135 0.865 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.053 0.947 48 H -0.009 1.009 49 H 0.250 0.750 50 H 0.044 0.956 51 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 -3.308 -22.622 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.090 0.910 4 N -0.348 5.348 5 C 0.387 3.613 6 O -0.448 6.448 7 C -0.220 4.220 8 C -0.048 4.048 9 O -0.076 6.076 10 C 0.003 3.997 11 C -0.051 4.051 12 C -0.170 4.170 13 C -0.165 4.165 14 C -0.164 4.164 15 N -0.215 5.215 16 C -0.114 4.114 17 H 0.093 0.907 18 C -0.134 4.134 19 C -0.169 4.169 20 C 0.047 3.953 21 N -0.331 5.331 22 C -0.394 4.394 23 H 0.082 0.918 24 C -0.246 4.246 25 N -0.582 5.582 26 Si 0.795 3.205 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.192 1.192 30 C 0.031 3.969 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.246 0.754 35 H 0.274 0.726 36 H 0.153 0.847 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.071 0.929 48 H 0.009 0.991 49 H 0.059 0.941 50 H 0.062 0.938 51 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -10.272 -2.931 -22.006 24.462 hybrid contribution 1.114 -0.220 0.286 1.171 sum -9.158 -3.151 -21.719 23.781 Atomic orbital electron populations 1.22130 0.93145 1.02868 1.02850 1.21019 0.95275 0.96226 0.82616 0.91016 1.45926 1.65177 1.14704 1.08944 1.16944 0.76871 0.85257 0.82226 1.90776 1.52977 1.15737 1.85351 1.21786 1.11975 0.91723 0.96530 1.25788 0.96095 0.95015 0.87887 1.84369 1.63612 1.18564 1.41034 1.26755 0.98306 0.90113 0.84488 1.21673 0.99497 0.85347 0.98560 1.23047 0.97179 1.00795 0.96004 1.22797 0.94264 0.98750 1.00676 1.23027 0.97555 1.01164 0.94609 1.70764 1.16269 1.14344 1.20100 1.21741 0.95940 0.99887 0.93869 0.90682 1.21444 1.01031 0.98177 0.92776 1.22006 0.96567 1.00187 0.98131 1.20661 0.91065 0.94749 0.88848 1.44310 1.50004 1.37842 1.00986 1.19500 1.11535 1.02728 1.05621 0.91810 1.25804 0.98331 1.00677 0.99820 1.70205 1.38849 1.31240 1.17862 0.85271 0.78280 0.80196 0.76775 1.21379 1.21650 1.19225 1.20914 0.92969 0.94669 0.88319 0.91555 0.89481 0.92988 0.75358 0.72580 0.84684 0.89499 0.89860 0.88345 0.89523 0.89466 0.89657 0.92868 0.89159 0.92714 0.90922 0.92865 0.99098 0.94102 0.93758 0.98488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.14 71.98 0.66 -2.96 16 2 C 0.15 4.53 2.16 44.99 0.10 4.63 16 3 H 0.07 2.39 7.58 -2.39 -0.02 2.37 16 4 N -0.70 -21.14 4.47 -445.80 -1.99 -23.14 16 5 C 0.60 18.90 7.78 86.66 0.67 19.57 16 6 O -0.57 -19.99 16.55 -4.08 -0.07 -20.06 16 7 C -0.10 -2.80 6.99 40.41 0.28 -2.52 16 8 C 0.03 0.56 11.95 67.32 0.80 1.36 16 9 O -0.19 -3.84 10.39 0.38 0.00 -3.84 16 10 C 0.21 4.63 7.33 88.39 0.65 5.27 16 11 C -0.03 -0.47 4.29 -11.01 -0.05 -0.52 16 12 C -0.13 -1.49 7.62 31.12 0.24 -1.25 16 13 C -0.13 -0.98 8.08 31.12 0.25 -0.73 16 14 C -0.13 -1.30 7.63 31.12 0.24 -1.06 16 15 N -0.49 -13.29 11.06 -293.03 -3.24 -16.53 16 16 C -0.09 -3.13 1.97 -10.72 -0.02 -3.16 16 17 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 18 C -0.10 -3.02 4.86 30.62 0.15 -2.88 16 19 C -0.13 -4.81 6.08 30.67 0.19 -4.62 16 20 C 0.17 8.53 5.31 86.36 0.46 8.99 16 21 N -0.61 -31.57 2.99 -699.10 -2.09 -33.67 16 22 C -0.26 -14.93 9.58 84.03 0.81 -14.13 16 23 H 0.06 3.54 7.89 -2.91 -0.02 3.51 16 24 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 25 N -0.94 -56.66 11.19 21.65 0.24 -56.42 16 26 Si 0.97 45.56 29.59 68.60 2.03 47.59 16 27 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 28 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 30 C 0.16 6.87 5.55 86.36 0.48 7.35 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.79 6.40 -2.39 -0.02 1.77 16 33 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.41 12.33 8.15 -92.71 -0.76 11.57 16 35 H 0.26 3.67 8.06 -2.91 -0.02 3.65 16 36 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.09 1.03 7.82 -2.38 -0.02 1.01 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.93 8.09 -2.38 -0.02 0.91 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.09 2.20 6.36 -2.38 -0.02 2.19 16 45 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.05 2.97 6.04 -2.39 -0.01 2.95 16 48 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 49 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 50 H 0.04 1.96 7.44 -2.39 -0.02 1.94 16 51 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 Total: -1.00 -72.47 406.79 1.38 -71.10 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.18 Total: 24.11 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 6.32 Total: 10.86 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -7.08 Total: -129.76 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.06 Total: -23.90 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -72.47 1.38 -71.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025592080.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.552 kcal (2) G-P(sol) polarization free energy of solvation -72.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds