Wall clock time and date at job start Wed Apr 1 2020 04:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47291 * 2 1 4 4 N 1.46499 * 109.47486 * 239.99964 * 2 1 3 5 5 C 1.34775 * 119.99894 * 84.99474 * 4 2 1 6 6 O 1.21606 * 120.00111 * 0.02562 * 5 4 2 7 7 C 1.47422 * 119.99915 * 180.02562 * 5 4 2 8 8 C 1.36088 * 126.44888 * 180.02562 * 7 5 4 9 9 O 1.34253 * 106.95015 * 179.97438 * 8 7 5 10 10 C 1.34045 * 108.22961 * 359.97438 * 9 8 7 11 11 C 1.50699 * 125.38281 * 180.02562 * 10 9 8 12 12 C 1.53781 * 113.61381 * 37.47063 * 11 10 9 13 13 C 1.53783 * 87.08204 * 220.02135 * 12 11 10 14 14 C 1.53781 * 87.07984 * 25.43378 * 13 12 11 15 15 N 1.29939 * 109.24194 * 359.74544 * 10 9 8 16 16 C 1.53006 * 109.47301 * 119.99918 * 2 1 3 17 17 H 1.09003 * 109.52279 * 180.02562 * 16 2 1 18 18 C 1.53042 * 109.49496 * 300.16257 * 16 2 1 19 19 C 1.53358 * 109.60286 * 181.32351 * 18 16 2 20 20 C 1.53190 * 109.14937 * 298.71210 * 19 18 16 21 21 N 1.46924 * 108.89627 * 54.58001 * 20 19 18 22 22 C 1.36930 * 120.63300 * 126.33733 * 21 20 19 23 23 H 1.08005 * 120.00167 * 331.83136 * 22 21 20 24 24 C 1.38816 * 120.00324 * 151.82723 * 22 21 20 25 25 N 1.31624 * 119.99356 * 343.06571 * 24 22 21 26 26 Si 1.86793 * 120.00395 * 163.06593 * 24 22 21 27 27 H 1.48500 * 109.46960 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47338 * 119.99948 * 26 24 22 29 29 H 1.48503 * 109.47085 * 239.99957 * 26 24 22 30 30 C 1.46930 * 118.73859 * 306.32351 * 21 20 19 31 31 H 1.08998 * 109.46774 * 299.99574 * 1 2 3 32 32 H 1.08996 * 109.46910 * 60.00391 * 1 2 3 33 33 H 1.09004 * 109.46609 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.99848 * 265.00643 * 4 2 1 35 35 H 1.08001 * 126.52653 * 359.94518 * 8 7 5 36 36 H 1.08996 * 112.85121 * 168.77891 * 11 10 9 37 37 H 1.08999 * 113.61857 * 334.56956 * 12 11 10 38 38 H 1.08996 * 113.61402 * 105.47118 * 12 11 10 39 39 H 1.08997 * 113.61577 * 270.88026 * 13 12 11 40 40 H 1.09007 * 113.61565 * 139.97979 * 13 12 11 41 41 H 1.08995 * 113.61399 * 220.01826 * 14 13 12 42 42 H 1.08998 * 113.61766 * 89.11757 * 14 13 12 43 43 H 1.08998 * 109.46031 * 301.33617 * 18 16 2 44 44 H 1.08999 * 109.45876 * 61.31331 * 18 16 2 45 45 H 1.08996 * 109.67935 * 178.74691 * 19 18 16 46 46 H 1.08996 * 109.47244 * 58.55500 * 19 18 16 47 47 H 1.09000 * 109.58857 * 294.72113 * 20 19 18 48 48 H 1.09000 * 109.58354 * 174.44083 * 20 19 18 49 49 H 0.96997 * 119.99488 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.59094 * 173.39705 * 30 21 20 51 51 H 1.09008 * 109.58128 * 293.67719 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1617 -2.4116 7 6 2.6380 -0.7133 -3.5609 8 6 2.8179 -0.1659 -4.7938 9 8 3.2765 -1.1426 -5.5926 10 6 3.3769 -2.2652 -4.8671 11 6 3.8543 -3.5981 -5.3834 12 6 5.0033 -3.4894 -6.3996 13 6 4.3112 -4.6163 -7.1844 14 6 2.9969 -4.1570 -6.5312 15 7 3.0031 -2.0213 -3.6467 16 6 2.0401 -0.7212 1.2493 17 1 3.1301 -0.7213 1.2503 18 6 1.5269 -0.0026 2.4992 19 6 2.0638 -0.7040 3.7529 20 6 1.5534 -2.1481 3.7782 21 7 1.9181 -2.8039 2.5151 22 6 2.6066 -3.9876 2.5168 23 1 3.2674 -4.2267 3.3370 24 6 2.4552 -4.8802 1.4645 25 7 1.4301 -4.7658 0.6469 26 14 3.7062 -6.2436 1.2089 27 1 4.7558 -6.1550 2.2558 28 1 3.0275 -7.5613 1.2982 29 1 4.3304 -6.0980 -0.1307 30 6 1.5298 -2.1657 1.2499 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 2.6275 0.8591 -5.0760 36 1 4.0407 -4.3184 -4.5869 37 1 5.0275 -2.5382 -6.9313 38 1 5.9741 -3.7729 -5.9930 39 1 4.6238 -5.6154 -6.8810 40 1 4.3347 -4.4742 -8.2649 41 1 2.3479 -4.9795 -6.2308 42 1 2.4725 -3.3883 -7.0988 43 1 1.8682 1.0325 2.4888 44 1 0.4372 -0.0256 2.5097 45 1 1.7172 -0.1799 4.6435 46 1 3.1535 -0.7035 3.7309 47 1 0.4693 -2.1506 3.8914 48 1 2.0091 -2.6821 4.6121 49 1 1.3242 -5.3897 -0.0881 50 1 1.9719 -2.7098 0.4153 51 1 0.4438 -2.1718 1.1558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025592081.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:39 Heat of formation + Delta-G solvation = -3.304618 kcal Electronic energy + Delta-G solvation = -31551.431923 eV Core-core repulsion = 27452.441844 eV Total energy + Delta-G solvation = -4098.990079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.55494 -41.03418 -39.62243 -39.38882 -36.61177 -36.00432 -34.80386 -32.88532 -31.82662 -31.50629 -29.66513 -27.22351 -27.18525 -26.62810 -26.07054 -24.59220 -23.88468 -22.78899 -22.08146 -21.44981 -20.50890 -20.04292 -19.14192 -18.60951 -17.91155 -17.71877 -17.23858 -16.73583 -16.62468 -16.19181 -16.04967 -15.74378 -15.66537 -15.23452 -15.01657 -14.75921 -14.64776 -14.15377 -13.96754 -13.80740 -13.71648 -13.56631 -13.37251 -13.28962 -12.98759 -12.80175 -12.67472 -12.43659 -12.38638 -12.09030 -11.98431 -11.90892 -11.84832 -11.75649 -11.50713 -11.46686 -11.45168 -11.34011 -11.08864 -11.04795 -10.50892 -10.24425 -9.97301 -8.62771 -7.84980 -5.30009 0.00624 0.86850 1.44324 1.46844 1.47146 1.56325 2.06170 2.16869 2.51563 2.77462 3.28336 3.50117 3.53572 3.61128 3.64991 3.78197 3.87536 3.92486 4.00641 4.02130 4.14206 4.30916 4.37683 4.42428 4.47662 4.55161 4.62339 4.68282 4.74037 4.74810 4.82027 4.84247 4.85633 4.92711 4.98650 5.01207 5.04291 5.07156 5.10743 5.16323 5.18341 5.27434 5.40659 5.44647 5.46577 5.49078 5.56788 5.68615 5.80224 6.28137 6.41231 6.54715 7.01190 7.17765 7.89294 8.40791 9.20020 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.003787 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.955395 B = 7391.432949 C =10018.155993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.088 0.912 4 N -0.703 5.703 5 C 0.599 3.401 6 O -0.565 6.565 7 C -0.107 4.107 8 C 0.032 3.968 9 O -0.187 6.187 10 C 0.213 3.787 11 C -0.037 4.037 12 C -0.125 4.125 13 C -0.125 4.125 14 C -0.128 4.128 15 N -0.493 5.493 16 C -0.109 4.109 17 H 0.054 0.946 18 C -0.099 4.099 19 C -0.123 4.123 20 C 0.137 3.863 21 N -0.612 5.612 22 C -0.265 4.265 23 H 0.061 0.939 24 C -0.042 4.042 25 N -0.925 5.925 26 Si 0.957 3.043 27 H -0.270 1.270 28 H -0.291 1.291 29 H -0.289 1.289 30 C 0.190 3.810 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.407 0.593 35 H 0.265 0.735 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.050 0.950 47 H 0.015 0.985 48 H 0.049 0.951 49 H 0.249 0.751 50 H 0.053 0.947 51 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.134 7.382 -14.244 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.051 3.949 3 H 0.106 0.894 4 N -0.352 5.352 5 C 0.386 3.614 6 O -0.446 6.446 7 C -0.225 4.225 8 C -0.042 4.042 9 O -0.073 6.073 10 C 0.004 3.996 11 C -0.056 4.056 12 C -0.163 4.163 13 C -0.163 4.163 14 C -0.167 4.167 15 N -0.222 5.222 16 C -0.130 4.130 17 H 0.072 0.928 18 C -0.136 4.136 19 C -0.162 4.162 20 C 0.012 3.988 21 N -0.335 5.335 22 C -0.396 4.396 23 H 0.079 0.921 24 C -0.239 4.239 25 N -0.571 5.571 26 Si 0.786 3.214 27 H -0.195 1.195 28 H -0.218 1.218 29 H -0.215 1.215 30 C 0.064 3.936 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.244 0.756 35 H 0.280 0.720 36 H 0.142 0.858 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.033 0.967 48 H 0.068 0.932 49 H 0.058 0.942 50 H 0.072 0.928 51 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 3.885 7.646 -13.850 16.291 hybrid contribution 0.378 -0.965 -0.300 1.079 sum 4.263 6.681 -14.151 16.219 Atomic orbital electron populations 1.22175 0.94623 1.01906 1.02617 1.21031 0.94741 0.96241 0.82883 0.89368 1.46175 1.64788 1.14833 1.09419 1.16965 0.76964 0.85348 0.82121 1.90740 1.53205 1.15356 1.85318 1.21867 1.12161 0.91548 0.96966 1.25830 0.95826 0.95011 0.87533 1.84356 1.63828 1.18287 1.40803 1.26675 0.98451 0.90194 0.84322 1.21659 1.00069 0.85385 0.98479 1.23031 0.96844 1.00913 0.95524 1.22788 0.93895 0.98706 1.00871 1.23046 0.97774 1.01131 0.94709 1.70858 1.16094 1.14792 1.20498 1.21919 0.99582 0.97376 0.94118 0.92784 1.21504 1.00684 0.98648 0.92812 1.21948 1.00201 0.95946 0.98122 1.21102 0.96298 0.93137 0.88307 1.44304 1.65552 1.22441 1.01204 1.19483 1.17930 0.95040 1.07118 0.92080 1.25676 0.98531 0.99607 1.00037 1.70167 1.28728 1.39100 1.19105 0.85363 0.79292 0.79162 0.77617 1.19504 1.21836 1.21524 1.20598 0.95158 0.88968 0.88850 0.89403 0.92948 0.93401 0.75644 0.71959 0.85761 0.88902 0.89663 0.88628 0.88973 0.90217 0.89283 0.90409 0.91465 0.89545 0.93084 0.96743 0.93232 0.94204 0.92834 0.97693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 8.79 71.98 0.63 -4.46 16 2 C 0.16 5.40 2.41 44.99 0.11 5.51 16 3 H 0.09 2.94 7.58 -2.38 -0.02 2.93 16 4 N -0.70 -26.51 5.00 -445.79 -2.23 -28.73 16 5 C 0.60 21.70 7.78 86.66 0.67 22.37 16 6 O -0.57 -21.24 16.55 -4.05 -0.07 -21.31 16 7 C -0.11 -3.48 6.99 40.41 0.28 -3.20 16 8 C 0.03 0.78 11.94 67.32 0.80 1.58 16 9 O -0.19 -4.39 10.39 0.47 0.00 -4.39 16 10 C 0.21 5.76 7.33 88.39 0.65 6.41 16 11 C -0.04 -0.75 4.29 -11.01 -0.05 -0.80 16 12 C -0.13 -1.79 7.62 31.12 0.24 -1.56 16 13 C -0.13 -1.43 8.08 31.12 0.25 -1.18 16 14 C -0.13 -2.03 7.63 31.12 0.24 -1.79 16 15 N -0.49 -16.98 11.06 -293.04 -3.24 -20.22 16 16 C -0.11 -4.11 2.33 -10.71 -0.03 -4.14 16 17 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 18 C -0.10 -3.08 4.78 30.73 0.15 -2.94 16 19 C -0.12 -4.02 6.11 30.78 0.19 -3.83 16 20 C 0.14 5.68 6.50 86.36 0.56 6.24 16 21 N -0.61 -30.87 2.99 -699.08 -2.09 -32.96 16 22 C -0.27 -14.77 9.58 84.04 0.81 -13.97 16 23 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 24 C -0.04 -2.38 4.92 84.86 0.42 -1.96 16 25 N -0.93 -54.36 11.20 21.65 0.24 -54.12 16 26 Si 0.96 45.22 29.59 68.60 2.03 47.25 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 28 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 29 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 30 C 0.19 8.99 4.08 86.36 0.35 9.34 16 31 H 0.09 2.46 6.46 -2.39 -0.02 2.44 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.78 6.32 -2.39 -0.02 1.76 16 34 H 0.41 17.13 6.70 -92.71 -0.62 16.51 16 35 H 0.26 4.19 8.06 -2.91 -0.02 4.16 16 36 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.09 1.27 7.81 -2.39 -0.02 1.25 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.07 2.04 6.50 -2.39 -0.02 2.02 16 45 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 49 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 50 H 0.05 2.88 4.64 -2.39 -0.01 2.87 16 51 H 0.01 0.26 6.19 -2.38 -0.01 0.24 16 Total: -1.00 -69.91 401.31 1.25 -68.67 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.32 Total: 34.17 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 6.28 Total: 11.65 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -7.32 Total: -136.03 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.69 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.91 1.25 -68.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025592081.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.361 kcal (2) G-P(sol) polarization free energy of solvation -69.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds