Wall clock time and date at job start Wed Apr 1 2020 04:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47453 * 2 1 4 4 N 1.46503 * 109.47088 * 119.99707 * 2 1 3 5 5 C 1.34770 * 120.00299 * 275.00219 * 4 2 1 6 6 O 1.21612 * 120.00028 * 359.97438 * 5 4 2 7 7 C 1.47422 * 120.00196 * 179.97438 * 5 4 2 8 8 C 1.36097 * 126.44870 * 179.69012 * 7 5 4 9 9 O 1.34254 * 106.94593 * 179.84149 * 8 7 5 10 10 C 1.34055 * 108.22844 * 0.42192 * 9 8 7 11 11 C 1.50695 * 125.37655 * 179.69614 * 10 9 8 12 12 C 1.53785 * 113.61782 * 37.53819 * 11 10 9 13 13 C 1.53780 * 87.08401 * 220.01554 * 12 11 10 14 14 C 1.53783 * 113.61762 * 300.04054 * 11 10 9 15 15 N 1.29927 * 109.24165 * 359.73476 * 10 9 8 16 16 C 1.52996 * 109.47482 * 239.99884 * 2 1 3 17 17 H 1.09005 * 109.50076 * 185.06257 * 16 2 1 18 18 C 1.53041 * 109.49820 * 65.00108 * 16 2 1 19 19 C 1.53036 * 109.54195 * 178.68499 * 18 16 2 20 20 C 1.53194 * 109.31497 * 61.36248 * 19 18 16 21 21 N 1.46928 * 108.77270 * 305.37059 * 20 19 18 22 22 C 1.36940 * 120.62848 * 233.58005 * 21 20 19 23 23 H 1.08001 * 119.99882 * 152.30385 * 22 21 20 24 24 C 1.38813 * 120.00112 * 332.31049 * 22 21 20 25 25 N 1.31622 * 119.99793 * 342.60107 * 24 22 21 26 26 Si 1.86802 * 120.00213 * 162.59527 * 24 22 21 27 27 H 1.48504 * 109.46808 * 94.34958 * 26 24 22 28 28 H 1.48494 * 109.46994 * 214.34927 * 26 24 22 29 29 H 1.48502 * 109.46978 * 334.34983 * 26 24 22 30 30 C 1.46919 * 118.74264 * 53.60700 * 21 20 19 31 31 H 1.09008 * 109.47358 * 59.99984 * 1 2 3 32 32 H 1.09002 * 109.47453 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47747 * 300.00313 * 1 2 3 34 34 H 0.97002 * 119.99837 * 94.99989 * 4 2 1 35 35 H 1.07995 * 126.52479 * 0.02562 * 8 7 5 36 36 H 1.09001 * 112.84918 * 168.84632 * 11 10 9 37 37 H 1.08993 * 113.61269 * 334.57111 * 12 11 10 38 38 H 1.09003 * 113.60987 * 105.46621 * 12 11 10 39 39 H 1.08994 * 113.61632 * 270.88719 * 13 12 11 40 40 H 1.08997 * 113.68925 * 139.98591 * 13 12 11 41 41 H 1.08991 * 113.61878 * 254.53100 * 14 11 10 42 42 H 1.09003 * 113.61160 * 25.43810 * 14 11 10 43 43 H 1.09000 * 109.45721 * 298.70689 * 18 16 2 44 44 H 1.09006 * 109.46258 * 58.66220 * 18 16 2 45 45 H 1.09001 * 109.50017 * 181.31798 * 19 18 16 46 46 H 1.08999 * 109.49963 * 301.41364 * 19 18 16 47 47 H 1.08995 * 109.59227 * 185.57840 * 20 19 18 48 48 H 1.09003 * 109.58384 * 65.15033 * 20 19 18 49 49 H 0.97005 * 119.99678 * 179.97438 * 25 24 22 50 50 H 1.09004 * 109.58814 * 186.60252 * 30 21 20 51 51 H 1.08999 * 109.59291 * 66.17682 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8581 1.1618 2.4117 7 6 2.6378 -0.7133 3.5610 8 6 2.8228 -0.1645 4.7926 9 8 3.2753 -1.1427 5.5930 10 6 3.3753 -2.2656 4.8675 11 6 3.8523 -3.5984 5.3840 12 6 3.3900 -3.9046 6.8184 13 6 4.7901 -4.4928 7.0602 14 6 5.2869 -3.5673 5.9370 15 7 2.9967 -2.0228 3.6485 16 6 2.0400 -0.7212 -1.2492 17 1 3.1263 -0.8007 -1.2054 18 6 1.6355 0.0686 -2.4960 19 6 2.1734 -0.6346 -3.7443 20 6 1.5613 -2.0357 -3.8399 21 7 1.8220 -2.7523 -2.5840 22 6 2.4218 -3.9833 -2.5946 23 1 3.0044 -4.3074 -1.7450 24 6 2.2811 -4.8144 -3.6975 25 7 1.3213 -4.5926 -4.5705 26 14 3.4540 -6.2475 -3.9428 27 1 2.8580 -7.4792 -3.3658 28 1 3.6947 -6.4471 -5.3945 29 1 4.7416 -5.9552 -3.2631 30 6 1.4264 -2.1233 -1.3165 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3635 0.5139 0.8899 34 1 2.2489 -1.6317 1.1527 35 1 2.6377 0.8618 5.0733 36 1 3.6724 -4.4132 4.6826 37 1 3.1828 -3.0130 7.4100 38 1 2.5907 -4.6439 6.8710 39 1 4.8662 -5.5528 6.8181 40 1 5.2033 -4.2515 8.0395 41 1 6.0191 -4.0342 5.2784 42 1 5.5983 -2.5833 6.2878 43 1 0.5485 0.1270 -2.5521 44 1 2.0505 1.0750 -2.4389 45 1 1.9050 -0.0591 -4.6302 46 1 3.2583 -0.7154 -3.6774 47 1 2.0149 -2.5768 -4.6703 48 1 0.4858 -1.9546 -3.9978 49 1 1.2233 -5.1732 -5.3414 50 1 1.7910 -2.7222 -0.4819 51 1 0.3400 -2.0493 -1.2686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025592083.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:47 Heat of formation + Delta-G solvation = 16.882668 kcal Electronic energy + Delta-G solvation = -30918.424942 eV Core-core repulsion = 26820.310249 eV Total energy + Delta-G solvation = -4098.114693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.65748 -39.79809 -39.01000 -37.96420 -35.18127 -35.04315 -32.96285 -31.25316 -30.59218 -30.42413 -28.06633 -26.50764 -26.11401 -25.27813 -24.94092 -23.27286 -22.15803 -21.90411 -20.96408 -20.19570 -19.62642 -18.65130 -18.11269 -17.01404 -16.92606 -16.56696 -16.04497 -15.83870 -15.48584 -14.88802 -14.85244 -14.34875 -14.16562 -13.80701 -13.71570 -13.42003 -13.22881 -13.05964 -12.99789 -12.85088 -12.51835 -12.33509 -12.24209 -11.78681 -11.61122 -11.49017 -11.41759 -10.99885 -10.98369 -10.94330 -10.90833 -10.87518 -10.55024 -10.44177 -10.22396 -10.16325 -10.01147 -9.83284 -9.58148 -9.36812 -9.21496 -8.86469 -8.43779 -6.63803 -5.77015 -3.18659 0.93173 1.82765 2.31594 3.14490 3.28316 3.37985 3.45361 3.48022 3.62705 4.06656 4.16105 4.38034 4.43499 4.50420 4.63939 4.75422 5.07843 5.17514 5.23094 5.25544 5.26003 5.36630 5.42295 5.43812 5.46303 5.48486 5.51251 5.60129 5.60448 5.71543 5.73696 5.83669 5.89795 5.95982 6.04970 6.15678 6.25895 6.28071 6.37792 6.52258 6.62679 6.65880 6.73323 6.81841 6.89604 7.01851 7.27148 7.42680 7.66924 7.69648 7.81546 8.22233 8.46794 9.23324 9.87042 10.43678 11.31337 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.002958 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.266868 B = 9463.488927 C =12077.265945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.083 0.917 4 N -0.699 5.699 5 C 0.600 3.400 6 O -0.545 6.545 7 C -0.067 4.067 8 C 0.005 3.995 9 O -0.196 6.196 10 C 0.209 3.791 11 C -0.021 4.021 12 C -0.132 4.132 13 C -0.139 4.139 14 C -0.131 4.131 15 N -0.455 5.455 16 C -0.113 4.113 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.591 5.591 22 C -0.251 4.251 23 H 0.065 0.935 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.279 1.279 30 C 0.151 3.849 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.412 0.588 35 H 0.230 0.770 36 H 0.135 0.865 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.086 0.914 48 H 0.017 0.983 49 H 0.253 0.747 50 H 0.048 0.952 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.218 6.067 21.179 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.101 0.899 4 N -0.350 5.350 5 C 0.385 3.615 6 O -0.423 6.423 7 C -0.187 4.187 8 C -0.068 4.068 9 O -0.082 6.082 10 C 0.000 4.000 11 C -0.040 4.040 12 C -0.171 4.171 13 C -0.177 4.177 14 C -0.169 4.169 15 N -0.184 5.184 16 C -0.134 4.134 17 H 0.091 0.909 18 C -0.138 4.138 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.381 4.381 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.547 5.547 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.204 1.204 30 C 0.024 3.976 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.248 0.752 35 H 0.246 0.754 36 H 0.153 0.847 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.104 0.896 48 H 0.035 0.965 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.954 6.333 20.541 21.856 hybrid contribution 0.608 -0.582 0.181 0.861 sum 4.562 5.751 20.722 21.984 Atomic orbital electron populations 1.22264 0.95237 1.02866 1.01932 1.21109 0.94319 0.96740 0.83399 0.89870 1.46028 1.65023 1.14938 1.08974 1.16749 0.77459 0.85510 0.81756 1.90797 1.51806 1.14882 1.84856 1.21902 1.09503 0.90985 0.96332 1.25255 0.98614 0.94136 0.88827 1.84331 1.64241 1.18495 1.41106 1.26089 0.99554 0.89356 0.85015 1.21354 0.97507 0.87524 0.97622 1.23022 0.98167 1.01940 0.93927 1.22819 0.95882 0.99729 0.99228 1.23025 0.94714 1.01118 0.98026 1.70825 1.14642 1.14154 1.18761 1.21955 1.00981 0.98084 0.92338 0.90935 1.21421 1.00523 0.97185 0.94681 1.22180 1.00614 0.99603 0.95753 1.20793 0.96580 0.88016 0.90228 1.44025 1.69892 1.17444 0.99925 1.19178 1.23556 0.92074 1.03302 0.91758 1.25013 0.97471 0.97644 0.99497 1.70047 1.30349 1.39717 1.14555 0.86319 0.81072 0.82491 0.77141 1.21481 1.21590 1.20445 1.20999 0.96128 0.90370 0.90071 0.91250 0.91486 0.92880 0.75172 0.75369 0.84681 0.89282 0.90177 0.89351 0.90640 0.90037 0.89490 0.92212 0.93528 0.93222 0.92814 0.89577 0.96469 0.93703 0.93333 0.95658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 8.76 37.15 0.33 -2.09 16 2 C 0.15 2.29 2.35 -67.94 -0.16 2.13 16 3 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.70 -10.71 5.01 -54.89 -0.27 -10.99 16 5 C 0.60 9.28 7.78 -12.52 -0.10 9.19 16 6 O -0.55 -9.38 16.55 5.27 0.09 -9.29 16 7 C -0.07 -0.92 6.99 -83.02 -0.58 -1.50 16 8 C 0.01 0.06 11.95 29.96 0.36 0.42 16 9 O -0.20 -2.04 10.39 6.51 0.07 -1.97 16 10 C 0.21 2.31 7.33 -13.09 -0.10 2.22 16 11 C -0.02 -0.17 4.29 -90.96 -0.39 -0.56 16 12 C -0.13 -0.80 7.62 -25.92 -0.20 -1.00 16 13 C -0.14 -0.69 8.08 -25.92 -0.21 -0.90 16 14 C -0.13 -0.83 7.63 -25.91 -0.20 -1.03 16 15 N -0.45 -6.22 11.06 -7.66 -0.08 -6.30 16 16 C -0.11 -1.94 2.27 -90.50 -0.21 -2.15 16 17 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 18 C -0.10 -1.68 4.89 -26.69 -0.13 -1.81 16 19 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 16 20 C 0.17 4.03 5.31 -3.71 -0.02 4.01 16 21 N -0.59 -14.66 2.99 -172.32 -0.52 -15.17 16 22 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 23 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 24 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 25 N -0.90 -26.16 11.19 55.49 0.62 -25.54 16 26 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 C 0.15 3.09 5.26 -3.71 -0.02 3.07 16 31 H 0.07 0.95 6.60 -51.92 -0.34 0.61 16 32 H 0.07 1.02 6.23 -51.93 -0.32 0.70 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.41 6.39 7.01 -40.82 -0.29 6.10 16 35 H 0.23 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 0.55 7.82 -51.93 -0.41 0.15 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 43 H 0.06 0.98 6.63 -51.93 -0.34 0.64 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.05 0.98 6.75 -51.93 -0.35 0.63 16 51 H 0.03 0.53 6.06 -51.93 -0.31 0.22 16 LS Contribution 401.82 15.07 6.06 6.06 Total: -1.00 -31.96 401.82 -9.20 -41.17 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.12 Total: 5.34 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.01 Total: 0.07 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.25 Total: -58.00 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.15 Total: -11.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.96 -9.20 -41.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025592083.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.049 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds