Wall clock time and date at job start Wed Apr 1 2020 04:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47139 * 2 1 4 4 C 1.52997 * 109.47263 * 240.00594 * 2 1 3 5 5 C 1.50699 * 109.47204 * 64.99728 * 4 2 1 6 6 O 1.21277 * 120.00057 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99811 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99756 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47149 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.51384 * 305.10266 * 9 8 7 11 11 C 1.53293 * 109.51356 * 185.00149 * 9 8 7 12 12 N 1.47162 * 108.38336 * 187.77645 * 11 9 8 13 13 C 1.36938 * 120.98122 * 230.50924 * 12 11 9 14 14 H 1.07998 * 120.00056 * 153.74169 * 13 12 11 15 15 C 1.38816 * 119.99798 * 333.74779 * 13 12 11 16 16 N 1.31620 * 119.99719 * 160.03621 * 15 13 12 17 17 Si 1.86800 * 120.00175 * 340.03766 * 15 13 12 18 18 H 1.48490 * 109.47099 * 91.89070 * 17 15 13 19 19 H 1.48499 * 109.46851 * 211.89128 * 17 15 13 20 20 H 1.48500 * 109.47034 * 331.88913 * 17 15 13 21 21 C 1.47152 * 118.03641 * 50.53448 * 12 11 9 22 22 C 1.53300 * 108.37999 * 309.46360 * 21 12 11 23 23 O 1.42955 * 109.22396 * 52.30375 * 22 21 12 24 24 C 1.50698 * 109.47666 * 120.00282 * 2 1 3 25 25 C 1.38659 * 120.78853 * 59.71638 * 24 2 1 26 26 C 1.38197 * 119.16225 * 179.76028 * 25 24 2 27 27 N 1.31870 * 120.76359 * 0.53131 * 26 25 24 28 28 C 1.31867 * 121.72738 * 359.74407 * 27 26 25 29 29 C 1.38204 * 120.76225 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47614 * 60.00045 * 1 2 3 31 31 H 1.09006 * 109.46811 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47213 * 299.99509 * 1 2 3 33 33 H 1.08998 * 109.47359 * 184.99934 * 4 2 1 34 34 H 1.09005 * 109.47064 * 304.99438 * 4 2 1 35 35 H 0.96997 * 120.00222 * 359.97438 * 7 5 4 36 36 H 1.08994 * 109.47576 * 299.99701 * 8 7 5 37 37 H 1.09007 * 109.47003 * 59.99781 * 8 7 5 38 38 H 1.08998 * 109.47517 * 59.99771 * 10 9 8 39 39 H 1.09003 * 109.47124 * 180.02562 * 10 9 8 40 40 H 1.09003 * 109.47009 * 299.99481 * 10 9 8 41 41 H 1.09002 * 109.68106 * 307.49708 * 11 9 8 42 42 H 1.08996 * 109.68398 * 68.01679 * 11 9 8 43 43 H 0.97004 * 120.00049 * 179.97438 * 16 15 13 44 44 H 1.08994 * 109.67926 * 69.18783 * 21 12 11 45 45 H 1.09000 * 109.68043 * 189.74457 * 21 12 11 46 46 H 1.09000 * 109.50587 * 172.23213 * 22 21 12 47 47 H 1.08997 * 109.51331 * 292.32384 * 22 21 12 48 48 H 1.08006 * 120.41517 * 0.02562 * 25 24 2 49 49 H 1.08004 * 119.61879 * 180.30230 * 26 25 24 50 50 H 1.07998 * 119.61511 * 179.97438 * 28 27 26 51 51 H 1.08004 * 120.41593 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0573 -2.4766 6 8 1.0116 1.0876 -2.3632 7 7 1.9844 -0.3916 -3.7002 8 6 1.5973 0.3653 -4.8932 9 6 2.1072 -0.3558 -6.1425 10 6 3.6161 -0.5798 -6.0233 11 6 1.8125 0.4966 -7.3820 12 7 2.1394 -0.2954 -8.5785 13 6 2.9367 0.2170 -9.5668 14 1 3.5095 -0.4470 -10.1972 15 6 3.0088 1.5900 -9.7585 16 7 4.0288 2.1112 -10.4068 17 14 1.6583 2.6977 -9.0963 18 1 2.0213 3.1597 -7.7326 19 1 1.4986 3.8723 -9.9907 20 1 0.3814 1.9416 -9.0393 21 6 1.5836 -1.6540 -8.6816 22 6 1.8896 -2.4016 -7.3787 23 8 1.4451 -1.6164 -6.2699 24 6 2.0324 -0.7104 1.2304 25 6 1.7027 -2.0360 1.4689 26 6 2.1861 -2.6561 2.6055 27 7 2.9431 -1.9989 3.4622 28 6 3.2720 -0.7364 3.2706 29 6 2.8304 -0.0525 2.1537 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 3.1262 -0.7993 -1.2057 34 1 1.6054 -1.7197 -1.2952 35 1 2.4883 -1.2155 -3.7909 36 1 0.5111 0.4443 -4.9369 37 1 2.0326 1.3637 -4.8472 38 1 3.8248 -1.1874 -5.1428 39 1 3.9787 -1.0932 -6.9139 40 1 4.1198 0.3823 -5.9286 41 1 0.7569 0.7679 -7.3985 42 1 2.4232 1.3992 -7.3605 43 1 4.0790 3.0706 -10.5411 44 1 0.5051 -1.5992 -8.8289 45 1 2.0433 -2.1759 -9.5209 46 1 1.3698 -3.3597 -7.3782 47 1 2.9635 -2.5702 -7.2993 48 1 1.0796 -2.5782 0.7731 49 1 1.9379 -3.6898 2.7961 50 1 3.8937 -0.2310 3.9948 51 1 3.1035 0.9813 2.0021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108022867.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:45 Heat of formation + Delta-G solvation = -22.705347 kcal Electronic energy + Delta-G solvation = -30925.084926 eV Core-core repulsion = 26825.253568 eV Total energy + Delta-G solvation = -4099.831358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.75610 -40.00126 -39.12935 -36.12871 -35.07768 -34.57591 -32.14027 -31.63427 -31.60182 -31.19187 -28.63363 -28.29940 -26.56738 -25.56085 -24.46680 -23.73761 -23.65464 -21.53028 -20.92088 -20.17502 -19.15618 -17.72559 -17.24449 -16.63519 -16.61621 -16.20617 -15.92752 -15.69286 -15.57242 -15.25164 -14.69113 -14.44144 -14.35111 -14.09728 -14.04725 -13.86326 -13.73873 -13.61282 -13.26805 -12.93846 -12.64324 -12.40084 -12.38389 -12.16641 -11.94293 -11.65163 -11.61071 -11.58058 -11.44849 -11.13338 -11.11212 -10.90978 -10.43471 -10.25121 -9.98331 -9.86601 -9.79394 -9.69147 -9.57005 -9.49551 -9.44502 -9.01344 -8.63355 -7.08577 -6.05281 -3.42702 0.79402 0.90109 2.59529 3.11974 3.23846 3.42689 3.44300 3.48483 3.97686 4.12538 4.21610 4.30427 4.42566 4.59759 4.68909 4.74494 4.77399 4.81289 4.84417 5.07898 5.15387 5.18384 5.25877 5.27448 5.32606 5.35090 5.38430 5.45067 5.59000 5.68311 5.70257 5.71037 5.76755 5.80327 5.86373 5.93259 6.00461 6.07243 6.14174 6.18843 6.20652 6.36053 6.39878 6.41522 6.48184 6.55523 6.69833 7.48928 7.56870 7.63731 7.77987 8.19622 8.20391 8.77897 9.58911 9.94916 11.10161 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019756 B = 0.002180 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.979157 B =12840.994942 C =13324.861716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 H 0.092 0.908 4 C -0.134 4.134 5 C 0.511 3.489 6 O -0.541 6.541 7 N -0.718 5.718 8 C 0.135 3.865 9 C 0.089 3.911 10 C -0.164 4.164 11 C 0.108 3.892 12 N -0.603 5.603 13 C -0.261 4.261 14 H 0.089 0.911 15 C 0.025 3.975 16 N -0.905 5.905 17 Si 0.878 3.122 18 H -0.286 1.286 19 H -0.301 1.301 20 H -0.270 1.270 21 C 0.112 3.888 22 C 0.044 3.956 23 O -0.380 6.380 24 C -0.030 4.030 25 C -0.168 4.168 26 C 0.098 3.902 27 N -0.492 5.492 28 C 0.099 3.901 29 C -0.170 4.170 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.403 0.597 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.036 0.964 42 H 0.083 0.917 43 H 0.264 0.736 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.053 0.947 48 H 0.134 0.866 49 H 0.155 0.845 50 H 0.155 0.845 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 -9.257 22.758 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.056 4.056 3 H 0.110 0.890 4 C -0.174 4.174 5 C 0.297 3.703 6 O -0.419 6.419 7 N -0.370 5.370 8 C 0.011 3.989 9 C 0.047 3.953 10 C -0.222 4.222 11 C -0.018 4.018 12 N -0.328 5.328 13 C -0.389 4.389 14 H 0.106 0.894 15 C -0.174 4.174 16 N -0.548 5.548 17 Si 0.708 3.292 18 H -0.214 1.214 19 H -0.229 1.229 20 H -0.195 1.195 21 C -0.013 4.013 22 C -0.034 4.034 23 O -0.299 6.299 24 C -0.038 4.038 25 C -0.188 4.188 26 C -0.058 4.058 27 N -0.201 5.201 28 C -0.058 4.058 29 C -0.189 4.189 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.238 0.762 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.104 0.896 47 H 0.072 0.928 48 H 0.152 0.848 49 H 0.172 0.828 50 H 0.172 0.828 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.389 -8.862 23.574 25.412 hybrid contribution -0.542 0.836 -0.818 1.289 sum -3.931 -8.027 22.756 24.448 Atomic orbital electron populations 1.21967 0.93097 1.01962 1.03633 1.19927 0.97176 0.99344 0.89162 0.89013 1.21727 1.03109 1.00302 0.92241 1.20521 0.79428 0.85778 0.84564 1.90678 1.39989 1.24624 1.86634 1.46014 1.57510 1.27858 1.05584 1.21364 1.00869 0.94701 0.81972 1.22240 0.92397 0.85852 0.94764 1.22225 0.95242 1.02725 1.01990 1.21915 0.99083 0.94992 0.85857 1.44305 1.57878 1.12639 1.17965 1.18881 1.18028 0.91363 1.10651 0.89392 1.25250 0.97470 0.96785 0.97889 1.69815 1.28457 1.11975 1.44509 0.87053 0.84450 0.80405 0.77253 1.21402 1.22876 1.19465 1.21632 0.97020 0.86760 0.95935 1.23083 0.99316 0.93596 0.87414 1.87843 1.63584 1.29680 1.48813 1.20373 0.94018 0.93907 0.95507 1.22043 1.01955 0.95337 0.99483 1.22766 0.93025 0.99941 0.90104 1.67678 1.12569 1.09281 1.30558 1.22770 0.96810 0.90390 0.95820 1.22130 0.99436 1.01665 0.95706 0.89708 0.92941 0.92717 0.88757 0.88617 0.76151 0.90736 0.90057 0.93439 0.90229 0.91594 0.94645 0.89938 0.92609 0.95129 0.91003 0.89643 0.92842 0.84777 0.82818 0.82804 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.75 37.15 0.33 -1.04 16 2 C -0.04 -0.32 2.24 -91.78 -0.21 -0.52 16 3 H 0.09 0.87 7.76 -51.93 -0.40 0.47 16 4 C -0.13 -1.11 4.93 -27.88 -0.14 -1.24 16 5 C 0.51 6.16 7.55 -10.98 -0.08 6.08 16 6 O -0.54 -8.38 13.97 5.56 0.08 -8.31 16 7 N -0.72 -8.76 5.20 -60.29 -0.31 -9.07 16 8 C 0.13 2.05 4.85 -4.04 -0.02 2.03 16 9 C 0.09 1.49 0.78 -90.47 -0.07 1.42 16 10 C -0.16 -2.57 7.86 37.16 0.29 -2.28 16 11 C 0.11 2.27 3.05 -3.53 -0.01 2.26 16 12 N -0.60 -13.61 2.35 -171.82 -0.40 -14.02 16 13 C -0.26 -6.96 10.10 -15.06 -0.15 -7.11 16 14 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 15 C 0.03 0.71 5.26 -17.43 -0.09 0.62 16 16 N -0.91 -26.91 13.97 55.49 0.78 -26.14 16 17 Si 0.88 21.89 24.28 -169.99 -4.13 17.77 16 18 H -0.29 -6.84 6.58 56.52 0.37 -6.47 16 19 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 20 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 21 C 0.11 2.09 6.74 -3.53 -0.02 2.06 16 22 C 0.04 0.67 6.60 37.31 0.25 0.92 16 23 O -0.38 -6.19 10.18 -35.23 -0.36 -6.55 16 24 C -0.03 -0.24 4.80 -104.32 -0.50 -0.74 16 25 C -0.17 -1.23 8.90 -39.44 -0.35 -1.59 16 26 C 0.10 0.78 11.18 -17.55 -0.20 0.58 16 27 N -0.49 -4.71 10.36 -13.25 -0.14 -4.85 16 28 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 29 C -0.17 -1.30 9.76 -39.44 -0.39 -1.69 16 30 H 0.08 0.98 5.95 -51.93 -0.31 0.67 16 31 H 0.05 0.41 7.47 -51.93 -0.39 0.03 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.64 7.68 -51.93 -0.40 0.24 16 35 H 0.40 4.18 6.98 -40.82 -0.29 3.90 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 38 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 39 H 0.08 1.40 6.12 -51.93 -0.32 1.09 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.04 0.77 6.86 -51.93 -0.36 0.42 16 42 H 0.08 1.88 4.60 -51.93 -0.24 1.64 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 1.28 7.96 -51.93 -0.41 0.87 16 46 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.05 0.81 6.26 -51.93 -0.33 0.48 16 48 H 0.13 0.75 7.35 -52.48 -0.39 0.36 16 49 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 50 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 51 H 0.14 0.82 8.01 -52.48 -0.42 0.40 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -32.51 394.10 -8.12 -40.63 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.01 Total: 4.25 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.56 Total: 0.35 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.08 Total: -54.08 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.28 Total: -14.86 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.13 Total: 17.77 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.51 -8.12 -40.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108022867.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.921 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds