Wall clock time and date at job start Wed Apr 1 2020 04:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47139 * 2 1 4 4 C 1.52997 * 109.47263 * 240.00594 * 2 1 3 5 5 C 1.50699 * 109.47204 * 64.99728 * 4 2 1 6 6 O 1.21277 * 120.00057 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99811 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99756 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47149 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.51384 * 305.10266 * 9 8 7 11 11 C 1.53293 * 109.51356 * 185.00149 * 9 8 7 12 12 N 1.47162 * 108.38336 * 187.77645 * 11 9 8 13 13 C 1.36938 * 120.98122 * 230.50924 * 12 11 9 14 14 H 1.07998 * 120.00056 * 153.74169 * 13 12 11 15 15 C 1.38816 * 119.99798 * 333.74779 * 13 12 11 16 16 N 1.31620 * 119.99719 * 160.03621 * 15 13 12 17 17 Si 1.86800 * 120.00175 * 340.03766 * 15 13 12 18 18 H 1.48490 * 109.47099 * 91.89070 * 17 15 13 19 19 H 1.48499 * 109.46851 * 211.89128 * 17 15 13 20 20 H 1.48500 * 109.47034 * 331.88913 * 17 15 13 21 21 C 1.47152 * 118.03641 * 50.53448 * 12 11 9 22 22 C 1.53300 * 108.37999 * 309.46360 * 21 12 11 23 23 O 1.42955 * 109.22396 * 52.30375 * 22 21 12 24 24 C 1.50698 * 109.47666 * 120.00282 * 2 1 3 25 25 C 1.38659 * 120.78853 * 59.71638 * 24 2 1 26 26 C 1.38197 * 119.16225 * 179.76028 * 25 24 2 27 27 N 1.31870 * 120.76359 * 0.53131 * 26 25 24 28 28 C 1.31867 * 121.72738 * 359.74407 * 27 26 25 29 29 C 1.38204 * 120.76225 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47614 * 60.00045 * 1 2 3 31 31 H 1.09006 * 109.46811 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47213 * 299.99509 * 1 2 3 33 33 H 1.08998 * 109.47359 * 184.99934 * 4 2 1 34 34 H 1.09005 * 109.47064 * 304.99438 * 4 2 1 35 35 H 0.96997 * 120.00222 * 359.97438 * 7 5 4 36 36 H 1.08994 * 109.47576 * 299.99701 * 8 7 5 37 37 H 1.09007 * 109.47003 * 59.99781 * 8 7 5 38 38 H 1.08998 * 109.47517 * 59.99771 * 10 9 8 39 39 H 1.09003 * 109.47124 * 180.02562 * 10 9 8 40 40 H 1.09003 * 109.47009 * 299.99481 * 10 9 8 41 41 H 1.09002 * 109.68106 * 307.49708 * 11 9 8 42 42 H 1.08996 * 109.68398 * 68.01679 * 11 9 8 43 43 H 0.97004 * 120.00049 * 179.97438 * 16 15 13 44 44 H 1.08994 * 109.67926 * 69.18783 * 21 12 11 45 45 H 1.09000 * 109.68043 * 189.74457 * 21 12 11 46 46 H 1.09000 * 109.50587 * 172.23213 * 22 21 12 47 47 H 1.08997 * 109.51331 * 292.32384 * 22 21 12 48 48 H 1.08006 * 120.41517 * 0.02562 * 25 24 2 49 49 H 1.08004 * 119.61879 * 180.30230 * 26 25 24 50 50 H 1.07998 * 119.61511 * 179.97438 * 28 27 26 51 51 H 1.08004 * 120.41593 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0573 -2.4766 6 8 1.0116 1.0876 -2.3632 7 7 1.9844 -0.3916 -3.7002 8 6 1.5973 0.3653 -4.8932 9 6 2.1072 -0.3558 -6.1425 10 6 3.6161 -0.5798 -6.0233 11 6 1.8125 0.4966 -7.3820 12 7 2.1394 -0.2954 -8.5785 13 6 2.9367 0.2170 -9.5668 14 1 3.5095 -0.4470 -10.1972 15 6 3.0088 1.5900 -9.7585 16 7 4.0288 2.1112 -10.4068 17 14 1.6583 2.6977 -9.0963 18 1 2.0213 3.1597 -7.7326 19 1 1.4986 3.8723 -9.9907 20 1 0.3814 1.9416 -9.0393 21 6 1.5836 -1.6540 -8.6816 22 6 1.8896 -2.4016 -7.3787 23 8 1.4451 -1.6164 -6.2699 24 6 2.0324 -0.7104 1.2304 25 6 1.7027 -2.0360 1.4689 26 6 2.1861 -2.6561 2.6055 27 7 2.9431 -1.9989 3.4622 28 6 3.2720 -0.7364 3.2706 29 6 2.8304 -0.0525 2.1537 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 3.1262 -0.7993 -1.2057 34 1 1.6054 -1.7197 -1.2952 35 1 2.4883 -1.2155 -3.7909 36 1 0.5111 0.4443 -4.9369 37 1 2.0326 1.3637 -4.8472 38 1 3.8248 -1.1874 -5.1428 39 1 3.9787 -1.0932 -6.9139 40 1 4.1198 0.3823 -5.9286 41 1 0.7569 0.7679 -7.3985 42 1 2.4232 1.3992 -7.3605 43 1 4.0790 3.0706 -10.5411 44 1 0.5051 -1.5992 -8.8289 45 1 2.0433 -2.1759 -9.5209 46 1 1.3698 -3.3597 -7.3782 47 1 2.9635 -2.5702 -7.2993 48 1 1.0796 -2.5782 0.7731 49 1 1.9379 -3.6898 2.7961 50 1 3.8937 -0.2310 3.9948 51 1 3.1035 0.9813 2.0021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108022867.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:44 Heat of formation + Delta-G solvation = -44.881448 kcal Electronic energy + Delta-G solvation = -30926.046554 eV Core-core repulsion = 26825.253568 eV Total energy + Delta-G solvation = -4100.792986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.49099 -41.05348 -40.29022 -36.98680 -36.49791 -35.90002 -33.65252 -33.35390 -32.17148 -31.83150 -30.01193 -29.24825 -28.07453 -26.86443 -25.32170 -25.15216 -24.29517 -22.88180 -21.93890 -21.03286 -20.59318 -19.05045 -18.53784 -17.71937 -17.47377 -17.24420 -17.00873 -16.74697 -16.42497 -16.30251 -16.20712 -15.77071 -15.60628 -15.37031 -15.05262 -14.86731 -14.70000 -14.39724 -14.35807 -14.05731 -13.98043 -13.87671 -13.59540 -13.35873 -13.09025 -13.04004 -12.71319 -12.71004 -12.43888 -12.35741 -12.27405 -12.22515 -12.01431 -11.74800 -11.63772 -11.27272 -11.05507 -10.84896 -10.50965 -10.45074 -10.35578 -10.08528 -10.03029 -8.95953 -8.21471 -5.53429 0.25912 0.32315 1.22972 1.36391 1.42712 1.67121 2.14189 2.34667 2.67094 2.91540 2.98428 3.21575 3.50783 3.65997 3.69580 3.76554 3.85300 3.89845 3.95310 4.13518 4.18716 4.25777 4.28707 4.29839 4.41262 4.44077 4.47381 4.52822 4.60304 4.63599 4.67590 4.71427 4.74751 4.80217 4.82125 4.88872 4.94716 4.95493 5.05707 5.10576 5.12462 5.16635 5.32311 5.35476 5.44757 5.54301 5.77354 5.83699 6.07269 6.23973 6.57095 6.80530 7.08667 7.27621 7.53032 7.94232 8.97765 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019756 B = 0.002180 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.979157 B =12840.994942 C =13324.861716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 H 0.077 0.923 4 C -0.124 4.124 5 C 0.510 3.490 6 O -0.579 6.579 7 N -0.710 5.710 8 C 0.143 3.857 9 C 0.102 3.898 10 C -0.158 4.158 11 C 0.102 3.898 12 N -0.616 5.616 13 C -0.241 4.241 14 H 0.063 0.937 15 C -0.028 4.028 16 N -0.951 5.951 17 Si 0.932 3.068 18 H -0.274 1.274 19 H -0.310 1.310 20 H -0.267 1.267 21 C 0.104 3.896 22 C 0.051 3.949 23 O -0.375 6.375 24 C -0.035 4.035 25 C -0.166 4.166 26 C 0.088 3.912 27 N -0.519 5.519 28 C 0.088 3.912 29 C -0.175 4.175 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.415 0.585 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.028 0.972 42 H 0.061 0.939 43 H 0.262 0.738 44 H 0.033 0.967 45 H 0.074 0.926 46 H 0.125 0.875 47 H 0.059 0.941 48 H 0.155 0.845 49 H 0.174 0.826 50 H 0.171 0.829 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 -11.546 25.096 27.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 H 0.096 0.904 4 C -0.164 4.164 5 C 0.298 3.702 6 O -0.459 6.459 7 N -0.362 5.362 8 C 0.018 3.982 9 C 0.061 3.939 10 C -0.216 4.216 11 C -0.024 4.024 12 N -0.341 5.341 13 C -0.370 4.370 14 H 0.080 0.920 15 C -0.224 4.224 16 N -0.597 5.597 17 Si 0.761 3.239 18 H -0.201 1.201 19 H -0.239 1.239 20 H -0.192 1.192 21 C -0.021 4.021 22 C -0.027 4.027 23 O -0.294 6.294 24 C -0.043 4.043 25 C -0.185 4.185 26 C -0.068 4.068 27 N -0.229 5.229 28 C -0.068 4.068 29 C -0.195 4.195 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.253 0.747 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.143 0.857 47 H 0.077 0.923 48 H 0.173 0.827 49 H 0.192 0.808 50 H 0.188 0.812 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.043 -11.206 25.952 28.556 hybrid contribution -0.365 1.448 -1.555 2.156 sum -4.408 -9.757 24.398 26.644 Atomic orbital electron populations 1.21907 0.93641 1.02520 1.02272 1.19810 0.96642 0.98838 0.89748 0.90412 1.21745 1.04374 1.00577 0.89686 1.21190 0.78369 0.85409 0.85230 1.90678 1.41615 1.26464 1.87114 1.45876 1.57607 1.28010 1.04754 1.21062 1.00092 0.94462 0.82630 1.21953 0.93271 0.85465 0.93246 1.22163 0.94019 1.02635 1.02772 1.21925 0.98028 0.95119 0.87361 1.44412 1.57788 1.14159 1.17773 1.18835 1.16962 0.90874 1.10334 0.91960 1.25765 0.99120 0.98228 0.99258 1.69924 1.30314 1.12052 1.47406 0.86175 0.82118 0.78523 0.77053 1.20106 1.23905 1.19218 1.21888 0.96876 0.84949 0.98381 1.23142 1.00363 0.94191 0.84973 1.87866 1.63615 1.29080 1.48880 1.20346 0.94402 0.94318 0.95277 1.22240 1.01669 0.95026 0.99574 1.23165 0.92673 1.00904 0.90061 1.67692 1.13561 1.10071 1.31594 1.23088 0.97084 0.90252 0.96395 1.22308 0.99324 1.02279 0.95583 0.92279 0.91394 0.92818 0.86868 0.86056 0.74730 0.91745 0.91092 0.89652 0.92208 0.92655 0.95384 0.92117 0.92911 0.94892 0.90772 0.85727 0.92265 0.82730 0.80846 0.81187 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.75 71.98 0.63 -1.79 16 2 C -0.03 -0.47 2.24 -11.54 -0.03 -0.50 16 3 H 0.08 1.39 7.76 -2.39 -0.02 1.37 16 4 C -0.12 -1.64 4.93 29.85 0.15 -1.49 16 5 C 0.51 11.14 7.55 87.66 0.66 11.80 16 6 O -0.58 -17.40 13.97 -3.02 -0.04 -17.45 16 7 N -0.71 -15.34 5.20 -463.06 -2.41 -17.75 16 8 C 0.14 4.11 4.85 86.38 0.42 4.53 16 9 C 0.10 3.22 0.78 -10.70 -0.01 3.21 16 10 C -0.16 -4.63 7.86 71.98 0.57 -4.07 16 11 C 0.10 4.20 3.05 86.35 0.26 4.47 16 12 N -0.62 -27.53 2.35 -697.52 -1.64 -29.18 16 13 C -0.24 -13.03 10.10 84.03 0.85 -12.18 16 14 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 15 C -0.03 -1.62 5.26 84.86 0.45 -1.18 16 16 N -0.95 -58.32 13.97 21.65 0.30 -58.02 16 17 Si 0.93 46.25 24.28 68.60 1.67 47.92 16 18 H -0.27 -12.90 6.58 99.48 0.65 -12.25 16 19 H -0.31 -15.74 7.11 99.48 0.71 -15.04 16 20 H -0.27 -12.97 6.54 99.48 0.65 -12.32 16 21 C 0.10 3.68 6.74 86.36 0.58 4.26 16 22 C 0.05 1.38 6.60 72.08 0.48 1.85 16 23 O -0.38 -11.00 10.18 -148.98 -1.52 -12.52 16 24 C -0.04 -0.48 4.80 -19.67 -0.09 -0.57 16 25 C -0.17 -1.92 8.90 22.36 0.20 -1.72 16 26 C 0.09 1.18 11.18 84.68 0.95 2.13 16 27 N -0.52 -9.07 10.36 -195.85 -2.03 -11.10 16 28 C 0.09 1.28 11.18 84.68 0.95 2.23 16 29 C -0.18 -2.38 9.76 22.36 0.22 -2.16 16 30 H 0.06 1.32 5.95 -2.39 -0.01 1.30 16 31 H 0.07 0.89 7.47 -2.38 -0.02 0.87 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.12 1.04 7.68 -2.38 -0.02 1.02 16 35 H 0.41 6.92 6.98 -92.71 -0.65 6.27 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.08 1.82 6.57 -2.39 -0.02 1.81 16 39 H 0.06 2.01 6.12 -2.39 -0.01 1.99 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 42 H 0.06 2.77 4.60 -2.39 -0.01 2.76 16 43 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 2.56 7.96 -2.39 -0.02 2.54 16 46 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.06 1.59 6.26 -2.39 -0.01 1.57 16 48 H 0.16 1.08 7.35 -2.91 -0.02 1.06 16 49 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 50 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 51 H 0.15 1.55 8.01 -2.91 -0.02 1.53 16 Total: -1.00 -72.55 394.10 1.74 -70.81 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.18 Total: 18.45 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 7.22 Total: 8.82 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -5.77 Total: -116.04 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.56 Total: -29.96 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.67 Total: 47.92 kcal Total: -72.55 1.74 -70.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108022867.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.926 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds