Wall clock time and date at job start Wed Apr 1 2020 04:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47621 * 2 1 4 4 C 1.52994 * 109.47203 * 239.99570 * 2 1 3 5 5 C 1.50707 * 109.47021 * 65.00246 * 4 2 1 6 6 O 1.21275 * 119.99767 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99808 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00032 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47560 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.55576 * 304.87639 * 9 8 7 11 11 C 1.53294 * 109.51294 * 184.74657 * 9 8 7 12 12 N 1.47157 * 108.38466 * 187.77388 * 11 9 8 13 13 C 1.36936 * 120.98274 * 230.55976 * 12 11 9 14 14 H 1.08003 * 119.99920 * 153.29946 * 13 12 11 15 15 C 1.38813 * 120.00057 * 333.29766 * 13 12 11 16 16 N 1.31618 * 119.99580 * 343.56028 * 15 13 12 17 17 Si 1.86796 * 119.99837 * 163.56160 * 15 13 12 18 18 H 1.48503 * 109.47298 * 59.99890 * 17 15 13 19 19 H 1.48500 * 109.46871 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47355 * 299.99676 * 17 15 13 21 21 C 1.47154 * 118.03367 * 50.53748 * 12 11 9 22 22 C 1.53295 * 108.38488 * 309.46343 * 21 12 11 23 23 O 1.42966 * 109.50995 * 65.00330 * 9 8 7 24 24 C 1.50707 * 109.47088 * 119.99695 * 2 1 3 25 25 C 1.38671 * 120.41967 * 240.00134 * 24 2 1 26 26 C 1.38627 * 118.41900 * 180.02562 * 25 24 2 27 27 C 1.38222 * 119.16206 * 359.97438 * 26 25 24 28 28 N 1.31852 * 120.76637 * 0.02562 * 27 26 25 29 29 C 1.31893 * 121.72267 * 359.70167 * 28 27 26 30 30 H 1.08995 * 109.47621 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47199 * 300.00210 * 1 2 3 32 32 H 1.09001 * 109.46845 * 59.99864 * 1 2 3 33 33 H 1.08998 * 109.47598 * 305.00127 * 4 2 1 34 34 H 1.09004 * 109.47335 * 185.00283 * 4 2 1 35 35 H 0.97008 * 120.00309 * 0.02562 * 7 5 4 36 36 H 1.09003 * 109.47219 * 59.99928 * 8 7 5 37 37 H 1.09004 * 109.47110 * 300.00562 * 8 7 5 38 38 H 1.08994 * 109.47437 * 180.12591 * 10 9 8 39 39 H 1.08998 * 109.46576 * 300.12505 * 10 9 8 40 40 H 1.09001 * 109.46654 * 60.12300 * 10 9 8 41 41 H 1.08993 * 109.68651 * 307.49640 * 11 9 8 42 42 H 1.09000 * 109.68171 * 68.01906 * 11 9 8 43 43 H 0.97005 * 119.99361 * 179.97438 * 16 15 13 44 44 H 1.09000 * 109.68106 * 189.74469 * 21 12 11 45 45 H 1.08998 * 109.67966 * 69.18562 * 21 12 11 46 46 H 1.08999 * 109.51768 * 172.22541 * 22 21 12 47 47 H 1.08995 * 109.51360 * 292.33078 * 22 21 12 48 48 H 1.08003 * 120.78808 * 0.02562 * 25 24 2 49 49 H 1.07994 * 120.41816 * 180.02562 * 26 25 24 50 50 H 1.07998 * 119.61955 * 179.97438 * 27 26 25 51 51 H 1.08003 * 119.61490 * 180.30769 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2491 5 6 1.6413 0.0570 -2.4766 6 8 1.0118 1.0873 -2.3633 7 7 1.9853 -0.3915 -3.7000 8 6 1.5974 0.3647 -4.8933 9 6 2.1075 -0.3565 -6.1425 10 6 3.6174 -0.5748 -6.0271 11 6 1.8061 0.4924 -7.3828 12 7 2.1336 -0.3003 -8.5786 13 6 2.9271 0.2134 -9.5693 14 1 3.5067 -0.4491 -10.1950 15 6 2.9866 1.5858 -9.7694 16 7 2.0640 2.3672 -9.2493 17 14 4.3760 2.3234 -10.7767 18 1 4.3434 1.7615 -12.1510 19 1 4.2119 3.7978 -10.8413 20 1 5.6769 1.9971 -10.1393 21 6 1.5835 -1.6615 -8.6780 22 6 1.8957 -2.4055 -7.3745 23 8 1.4504 -1.6202 -6.2660 24 6 2.0323 -0.7104 1.2306 25 6 2.8300 -0.0448 2.1490 26 6 3.2695 -0.7383 3.2660 27 6 2.9001 -2.0606 3.4263 28 7 2.1400 -2.6617 2.5321 29 6 1.6994 -2.0316 1.4605 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -1.7199 -1.2951 34 1 3.1263 -0.7996 -1.2055 35 1 2.4892 -1.2155 -3.7906 36 1 2.0312 1.3636 -4.8474 37 1 0.5110 0.4422 -4.9370 38 1 3.9797 -1.0866 -6.9186 39 1 4.1176 0.3891 -5.9330 40 1 3.8305 -1.1822 -5.1475 41 1 0.7493 0.7591 -7.3973 42 1 2.4129 1.3977 -7.3643 43 1 2.1058 3.3262 -9.3888 44 1 2.0434 -2.1829 -9.5174 45 1 0.5043 -1.6117 -8.8227 46 1 1.3800 -3.3658 -7.3709 47 1 2.9705 -2.5692 -7.2972 48 1 3.1025 0.9893 1.9977 49 1 3.8919 -0.2514 4.0021 50 1 3.2386 -2.6080 4.2935 51 1 1.0746 -2.5557 0.7524 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108256371.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:31 Heat of formation + Delta-G solvation = -28.857476 kcal Electronic energy + Delta-G solvation = -30806.560014 eV Core-core repulsion = 26706.461880 eV Total energy + Delta-G solvation = -4100.098134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.71829 -39.80678 -38.85748 -35.86678 -34.84639 -34.34149 -32.54081 -31.84025 -31.28282 -30.38688 -28.29736 -27.95068 -26.37261 -25.38919 -24.31713 -23.77711 -23.25547 -21.53671 -20.84192 -20.03701 -18.70675 -17.63203 -17.24488 -16.95296 -16.53925 -15.96094 -15.55941 -15.47123 -15.16435 -14.96745 -14.44772 -14.34882 -14.18244 -14.03096 -13.75469 -13.52005 -13.46368 -13.35819 -13.06598 -12.99630 -12.72989 -12.64067 -12.20041 -11.90483 -11.62025 -11.47695 -11.45171 -11.22199 -11.09678 -11.02728 -10.83550 -10.70575 -10.34206 -10.29836 -10.10648 -10.02050 -9.77331 -9.67463 -9.54110 -9.25205 -9.06108 -8.82898 -8.56582 -6.76431 -5.87333 -3.31269 0.78576 0.96951 2.74180 3.27566 3.32859 3.38848 3.39179 3.51650 4.11588 4.22382 4.40060 4.41048 4.45298 4.63166 4.68838 4.76826 4.88084 4.96881 5.12066 5.21680 5.26678 5.31485 5.38901 5.45187 5.48079 5.50134 5.52340 5.64250 5.74573 5.76846 5.88630 5.90767 5.91095 5.99702 6.07015 6.10422 6.10990 6.23504 6.30288 6.38652 6.43362 6.56282 6.67270 6.73215 6.79664 7.04095 7.43544 7.65448 7.66551 7.67752 7.85542 8.30350 8.35350 9.08022 9.70930 10.28353 11.20619 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.002055 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.973271 B =13620.848985 C =14024.056227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.030 4.030 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.510 3.490 6 O -0.542 6.542 7 N -0.718 5.718 8 C 0.139 3.861 9 C 0.078 3.922 10 C -0.161 4.161 11 C 0.160 3.840 12 N -0.590 5.590 13 C -0.255 4.255 14 H 0.067 0.933 15 C 0.004 3.996 16 N -0.901 5.901 17 Si 0.904 3.096 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.384 6.384 24 C -0.124 4.124 25 C -0.073 4.073 26 C -0.171 4.171 27 C 0.089 3.911 28 N -0.484 5.484 29 C 0.103 3.897 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.401 0.599 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.029 0.971 42 H 0.096 0.904 43 H 0.256 0.744 44 H 0.061 0.939 45 H 0.026 0.974 46 H 0.080 0.920 47 H 0.048 0.952 48 H 0.135 0.865 49 H 0.134 0.866 50 H 0.153 0.847 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 -7.944 21.496 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.050 4.050 3 H 0.108 0.892 4 C -0.175 4.175 5 C 0.296 3.704 6 O -0.420 6.420 7 N -0.370 5.370 8 C 0.016 3.984 9 C 0.037 3.963 10 C -0.219 4.219 11 C 0.033 3.967 12 N -0.314 5.314 13 C -0.385 4.385 14 H 0.085 0.915 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.733 3.267 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.210 1.210 21 C -0.017 4.017 22 C -0.032 4.032 23 O -0.304 6.304 24 C -0.126 4.126 25 C -0.099 4.099 26 C -0.191 4.191 27 C -0.068 4.068 28 N -0.192 5.192 29 C -0.054 4.054 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.236 0.764 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.114 0.886 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.098 0.902 47 H 0.066 0.934 48 H 0.152 0.848 49 H 0.152 0.848 50 H 0.171 0.829 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.418 -7.950 21.765 23.215 hybrid contribution 1.424 0.981 -0.958 1.977 sum 2.843 -6.969 20.808 22.127 Atomic orbital electron populations 1.21983 0.93274 1.01923 1.03586 1.19820 0.97008 0.99150 0.88997 0.89230 1.21758 1.02981 1.00336 0.92463 1.20503 0.79518 0.85803 0.84592 1.90673 1.40045 1.24642 1.86642 1.46072 1.57314 1.27828 1.05768 1.21333 1.00807 0.94602 0.81684 1.22550 0.91615 0.85903 0.96256 1.22198 0.96161 1.02182 1.01343 1.21286 0.99454 0.93837 0.82092 1.43984 1.57475 1.11289 1.18649 1.19110 1.17893 0.90446 1.11007 0.91490 1.25056 0.97925 0.97189 0.99342 1.70002 1.32225 1.04108 1.48204 0.86352 0.82126 0.78101 0.80083 1.20840 1.21536 1.20990 1.21600 0.96961 0.87949 0.95233 1.23033 0.98693 0.93516 0.87942 1.87823 1.64020 1.29921 1.48586 1.20971 0.98361 0.95770 0.97527 1.21581 0.94887 1.00311 0.93105 1.22155 1.01747 0.96255 0.98916 1.22761 0.94155 0.92405 0.97490 1.67709 1.10044 1.38781 1.02674 1.22662 0.96820 0.91507 0.94437 0.92985 0.92822 0.89671 0.88714 0.88931 0.76359 0.90069 0.90866 0.90795 0.91909 0.94000 0.95264 0.88609 0.93360 0.92056 0.95652 0.90200 0.93417 0.84752 0.84835 0.82932 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.75 37.15 0.33 -1.16 16 2 C -0.03 -0.28 2.22 -91.77 -0.20 -0.48 16 3 H 0.09 0.90 7.74 -51.93 -0.40 0.49 16 4 C -0.14 -1.23 4.92 -27.88 -0.14 -1.37 16 5 C 0.51 6.61 7.55 -10.98 -0.08 6.53 16 6 O -0.54 -8.87 13.97 5.56 0.08 -8.80 16 7 N -0.72 -9.54 5.19 -60.29 -0.31 -9.85 16 8 C 0.14 2.29 4.85 -4.04 -0.02 2.27 16 9 C 0.08 1.40 0.78 -90.47 -0.07 1.33 16 10 C -0.16 -2.66 7.86 37.16 0.29 -2.37 16 11 C 0.16 3.65 4.11 -3.53 -0.01 3.64 16 12 N -0.59 -14.14 2.56 -171.83 -0.44 -14.58 16 13 C -0.26 -6.70 9.65 -15.06 -0.15 -6.84 16 14 H 0.07 1.72 7.88 -52.48 -0.41 1.31 16 15 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 16 N -0.90 -25.39 11.14 55.49 0.62 -24.77 16 17 Si 0.90 21.05 29.58 -169.99 -5.03 16.02 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.11 2.20 6.73 -3.53 -0.02 2.17 16 22 C 0.05 0.78 6.60 37.31 0.25 1.02 16 23 O -0.38 -6.87 10.17 -35.23 -0.36 -7.23 16 24 C -0.12 -1.07 4.79 -104.48 -0.50 -1.57 16 25 C -0.07 -0.56 9.81 -39.28 -0.39 -0.95 16 26 C -0.17 -1.19 10.11 -39.44 -0.40 -1.59 16 27 C 0.09 0.71 11.18 -17.55 -0.20 0.51 16 28 N -0.48 -4.90 10.36 -13.25 -0.14 -5.03 16 29 C 0.10 0.94 9.95 -17.55 -0.17 0.77 16 30 H 0.05 0.45 7.40 -51.93 -0.38 0.07 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.05 5.95 -51.93 -0.31 0.74 16 33 H 0.09 0.72 7.61 -51.93 -0.40 0.32 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.40 4.64 7.00 -40.82 -0.29 4.35 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.35 6.11 -51.93 -0.32 1.03 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.56 6.59 -51.93 -0.34 0.22 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 2.42 6.16 -51.93 -0.32 2.10 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.05 0.78 6.26 -51.93 -0.32 0.45 16 48 H 0.13 0.83 8.00 -52.48 -0.42 0.41 16 49 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 50 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 51 H 0.15 1.19 7.19 -52.48 -0.38 0.81 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -31.40 400.54 -9.19 -40.59 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.07 Total: 5.66 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.58 Total: 1.95 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.27 Total: -54.23 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.28 Total: -16.03 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.40 -9.19 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108256371.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.735 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds