Wall clock time and date at job start Wed Apr 1 2020 04:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47358 * 2 1 4 4 C 1.53006 * 109.47124 * 240.00009 * 2 1 3 5 5 C 1.50694 * 109.47245 * 65.00109 * 4 2 1 6 6 O 1.21287 * 119.99948 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00217 * 180.27232 * 5 4 2 8 8 C 1.46502 * 120.00279 * 179.72342 * 7 5 4 9 9 C 1.53000 * 109.47046 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.46804 * 305.00350 * 9 8 7 11 11 C 1.54809 * 109.46695 * 185.00748 * 9 8 7 12 12 N 1.45122 * 109.53872 * 172.10684 * 11 9 8 13 13 C 1.36932 * 118.75854 * 269.29324 * 12 11 9 14 14 H 1.07993 * 120.00419 * 26.09292 * 13 12 11 15 15 C 1.38811 * 119.99775 * 206.09270 * 13 12 11 16 16 N 1.31618 * 119.99991 * 15.46840 * 15 13 12 17 17 Si 1.86804 * 120.00222 * 195.46706 * 15 13 12 18 18 H 1.48497 * 109.46953 * 89.99930 * 17 15 13 19 19 H 1.48496 * 109.47166 * 210.00130 * 17 15 13 20 20 H 1.48500 * 109.46902 * 330.00178 * 17 15 13 21 21 C 1.47513 * 122.48090 * 89.28932 * 12 11 9 22 22 C 1.53573 * 111.02634 * 318.37262 * 21 12 11 23 23 C 1.51536 * 109.58599 * 320.02500 * 22 21 12 24 24 O 1.38010 * 109.46935 * 64.99857 * 9 8 7 25 25 C 1.50700 * 109.46863 * 120.00258 * 2 1 3 26 26 C 1.38650 * 120.79112 * 59.71632 * 25 2 1 27 27 C 1.38213 * 119.16059 * 179.79516 * 26 25 2 28 28 N 1.31864 * 120.76035 * 0.49336 * 27 26 25 29 29 C 1.31864 * 121.73010 * 359.73649 * 28 27 26 30 30 C 1.38198 * 120.76637 * 0.02562 * 29 28 27 31 31 H 1.09005 * 109.46431 * 60.00330 * 1 2 3 32 32 H 1.09003 * 109.47036 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46952 * 300.00035 * 1 2 3 34 34 H 1.09005 * 109.46637 * 305.00071 * 4 2 1 35 35 H 1.09000 * 109.46818 * 185.00514 * 4 2 1 36 36 H 0.97003 * 119.99739 * 359.72917 * 7 5 4 37 37 H 1.09001 * 109.46955 * 300.00315 * 8 7 5 38 38 H 1.09005 * 109.46601 * 60.00213 * 8 7 5 39 39 H 1.09003 * 109.45726 * 292.12677 * 11 9 8 40 40 H 1.08997 * 109.46046 * 52.08428 * 11 9 8 41 41 H 0.97008 * 120.00302 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.16732 * 197.98314 * 21 12 11 43 43 H 1.09000 * 109.16759 * 78.77340 * 21 12 11 44 44 H 1.09001 * 109.45220 * 199.98772 * 22 21 12 45 45 H 1.09008 * 109.45450 * 80.05817 * 22 21 12 46 46 H 1.09003 * 109.58767 * 331.61398 * 23 22 21 47 47 H 1.09000 * 109.59026 * 211.18659 * 23 22 21 48 48 H 1.07998 * 120.42076 * 0.02562 * 26 25 2 49 49 H 1.07993 * 119.61687 * 180.20698 * 27 26 25 50 50 H 1.08009 * 119.62037 * 180.02562 * 29 28 27 51 51 H 1.08002 * 120.42419 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.6415 0.0570 -2.4766 6 8 1.0110 1.0869 -2.3633 7 7 1.9803 -0.3945 -3.7004 8 6 1.5875 0.3589 -4.8939 9 6 2.0923 -0.3656 -6.1434 10 1 3.1679 -0.5224 -6.0628 11 6 1.7883 0.4926 -7.3955 12 7 2.4275 -0.0991 -8.5563 13 6 3.6970 0.2970 -8.8827 14 1 4.3572 0.6784 -8.1179 15 6 4.1354 0.2082 -10.1967 16 7 3.2661 0.0403 -11.1706 17 14 5.9592 0.3270 -10.5830 18 1 6.5612 -1.0301 -10.5519 19 1 6.1418 0.9187 -11.9327 20 1 6.6244 1.1869 -9.5714 21 6 1.7613 -1.1110 -9.3977 22 6 1.0018 -2.1306 -8.5362 23 6 1.8223 -2.4690 -7.3079 24 8 1.4567 -1.5854 -6.2561 25 6 2.0323 -0.7105 1.2305 26 6 1.7026 -2.0359 1.4690 27 6 2.1853 -2.6558 2.6061 28 7 2.9422 -1.9986 3.4628 29 6 3.2719 -0.7364 3.2707 30 6 2.8304 -0.0525 2.1538 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6054 -1.7198 -1.2951 35 1 3.1264 -0.7995 -1.2055 36 1 2.4841 -1.2185 -3.7910 37 1 0.5010 0.4365 -4.9333 38 1 2.0219 1.3578 -4.8522 39 1 0.7108 0.5328 -7.5553 40 1 2.1708 1.5021 -7.2454 41 1 3.5724 -0.0222 -12.0889 42 1 2.5117 -1.6330 -9.9915 43 1 1.0589 -0.6140 -10.0667 44 1 0.8259 -3.0365 -9.1163 45 1 0.0462 -1.7057 -8.2286 46 1 2.8823 -2.3510 -7.5326 47 1 1.6227 -3.4976 -7.0072 48 1 1.0796 -2.5782 0.7732 49 1 1.9358 -3.6889 2.7975 50 1 3.8943 -0.2310 3.9945 51 1 3.1041 0.9811 2.0018 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149896778.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:11 Heat of formation + Delta-G solvation = -32.760437 kcal Electronic energy + Delta-G solvation = -30357.826067 eV Core-core repulsion = 26257.558688 eV Total energy + Delta-G solvation = -4100.267379 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.72393 -39.79598 -38.86599 -36.09148 -35.25307 -34.61084 -32.24766 -31.61777 -31.53478 -31.20941 -29.11782 -27.68440 -25.64090 -25.26672 -24.48951 -23.73075 -22.75544 -21.14088 -20.89315 -20.02687 -19.55793 -17.64167 -17.06369 -16.65796 -16.52737 -16.22171 -16.02354 -15.77776 -15.45930 -15.15865 -14.88855 -14.39973 -14.33323 -14.05538 -13.82129 -13.73757 -13.65269 -13.27502 -13.05773 -12.83414 -12.62360 -12.33392 -12.13907 -12.13135 -11.65563 -11.58188 -11.41488 -11.24677 -11.09918 -11.02192 -10.91113 -10.69532 -10.27544 -9.95483 -9.91182 -9.81067 -9.79467 -9.75957 -9.67602 -9.47905 -8.96484 -8.86772 -8.48228 -6.80947 -5.88736 -3.33948 0.80944 0.91822 2.63530 3.18568 3.30005 3.37579 3.38479 3.50295 4.10627 4.14215 4.24488 4.32598 4.40030 4.62446 4.76651 4.79397 4.83165 4.88753 5.12146 5.16324 5.30060 5.31056 5.34689 5.40465 5.46724 5.49487 5.57221 5.61095 5.65747 5.72540 5.81126 5.83595 5.93963 5.98551 6.09076 6.12024 6.16287 6.23449 6.30202 6.37825 6.47561 6.56374 6.65687 6.69901 6.77493 7.30386 7.54640 7.58852 7.65270 7.71888 8.15388 8.24649 8.34264 9.12107 9.76775 10.22823 11.18678 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.001937 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.095567 B =14451.835726 C =14910.260952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 H 0.091 0.909 4 C -0.134 4.134 5 C 0.511 3.489 6 O -0.543 6.543 7 N -0.719 5.719 8 C 0.132 3.868 9 C 0.066 3.934 10 H 0.051 0.949 11 C 0.128 3.872 12 N -0.591 5.591 13 C -0.266 4.266 14 H 0.066 0.934 15 C 0.007 3.993 16 N -0.902 5.902 17 Si 0.903 3.097 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.177 3.823 22 C -0.177 4.177 23 C 0.088 3.912 24 O -0.396 6.396 25 C -0.030 4.030 26 C -0.168 4.168 27 C 0.098 3.902 28 N -0.492 5.492 29 C 0.099 3.901 30 C -0.170 4.170 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.403 0.597 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.255 0.745 42 H 0.075 0.925 43 H 0.027 0.973 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.135 0.865 49 H 0.154 0.846 50 H 0.154 0.846 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.264 -5.148 22.425 23.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.056 4.056 3 H 0.110 0.890 4 C -0.175 4.175 5 C 0.297 3.703 6 O -0.421 6.421 7 N -0.370 5.370 8 C 0.008 3.992 9 C 0.004 3.996 10 H 0.069 0.931 11 C -0.002 4.002 12 N -0.312 5.312 13 C -0.396 4.396 14 H 0.084 0.916 15 C -0.192 4.192 16 N -0.545 5.545 17 Si 0.732 3.268 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.052 3.948 22 C -0.216 4.216 23 C 0.012 3.988 24 O -0.315 6.315 25 C -0.038 4.038 26 C -0.188 4.188 27 C -0.058 4.058 28 N -0.201 5.201 29 C -0.058 4.058 30 C -0.189 4.189 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.237 0.763 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.152 0.848 49 H 0.172 0.828 50 H 0.172 0.828 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.535 -4.880 23.120 23.892 hybrid contribution 1.156 0.092 -1.477 1.877 sum -2.379 -4.788 21.643 22.294 Atomic orbital electron populations 1.21968 0.93100 1.01958 1.03614 1.19930 0.97170 0.99317 0.89173 0.89036 1.21733 1.03084 1.00320 0.92316 1.20500 0.79436 0.85735 0.84605 1.90671 1.40077 1.24720 1.86681 1.46030 1.57366 1.27871 1.05751 1.21428 1.00859 0.94727 0.82154 1.22627 0.95766 0.86014 0.95151 0.93101 1.21408 0.96504 0.95157 0.87089 1.43833 1.15136 1.43889 1.28391 1.19218 0.88694 1.39654 0.91998 0.91576 1.25055 0.97840 1.00686 0.95662 1.70070 1.32130 1.53365 0.98983 0.86290 0.85152 0.77795 0.77518 1.21399 1.21663 1.20397 1.20998 0.95395 0.88028 0.90387 1.22773 1.00188 1.00601 0.98019 1.22011 0.99534 0.90752 0.86483 1.86067 1.65367 1.28255 1.51825 1.20382 0.94002 0.93906 0.95514 1.22047 1.01945 0.95341 0.99470 1.22768 0.93026 0.99935 0.90109 1.67672 1.12573 1.09281 1.30591 1.22765 0.96825 0.90397 0.95829 1.22127 0.99458 1.01658 0.95706 0.89680 0.92957 0.92751 0.88644 0.88816 0.76333 0.90987 0.90255 0.93828 0.92640 0.93527 0.90632 0.95457 0.92099 0.92391 0.92065 0.91259 0.84764 0.82824 0.82827 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.75 37.16 0.33 -1.03 16 2 C -0.04 -0.32 2.24 -91.77 -0.21 -0.52 16 3 H 0.09 0.86 7.76 -51.93 -0.40 0.46 16 4 C -0.13 -1.12 4.93 -27.88 -0.14 -1.26 16 5 C 0.51 6.10 7.55 -10.99 -0.08 6.01 16 6 O -0.54 -8.24 13.96 5.55 0.08 -8.17 16 7 N -0.72 -8.70 5.49 -60.29 -0.33 -9.03 16 8 C 0.13 1.90 5.34 -4.04 -0.02 1.88 16 9 C 0.07 1.11 2.68 -25.78 -0.07 1.04 16 10 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 11 C 0.13 2.54 5.12 -3.83 -0.02 2.53 16 12 N -0.59 -13.94 2.23 -172.02 -0.38 -14.33 16 13 C -0.27 -6.91 9.46 -15.06 -0.14 -7.05 16 14 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 15 C 0.01 0.18 4.89 -17.43 -0.09 0.09 16 16 N -0.90 -25.26 10.99 55.49 0.61 -24.65 16 17 Si 0.90 20.98 29.58 -169.99 -5.03 15.95 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.18 4.04 4.70 -3.19 -0.02 4.03 16 22 C -0.18 -3.21 5.78 -27.17 -0.16 -3.37 16 23 C 0.09 1.49 6.37 36.42 0.23 1.72 16 24 O -0.40 -6.65 9.38 -26.52 -0.25 -6.89 16 25 C -0.03 -0.24 4.80 -104.32 -0.50 -0.74 16 26 C -0.17 -1.25 8.90 -39.44 -0.35 -1.60 16 27 C 0.10 0.79 11.18 -17.55 -0.20 0.59 16 28 N -0.49 -4.75 10.36 -13.25 -0.14 -4.89 16 29 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 30 C -0.17 -1.31 9.76 -39.44 -0.39 -1.69 16 31 H 0.08 0.97 5.95 -51.93 -0.31 0.66 16 32 H 0.05 0.41 7.47 -51.93 -0.39 0.03 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.65 7.68 -51.93 -0.40 0.25 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.40 4.22 8.46 -40.82 -0.35 3.87 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 40 H 0.06 1.11 7.98 -51.93 -0.41 0.69 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.08 1.92 6.37 -51.93 -0.33 1.58 16 43 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 1.05 8.01 -51.92 -0.42 0.64 16 46 H 0.06 1.16 7.40 -51.93 -0.38 0.77 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.13 0.77 7.35 -52.49 -0.39 0.38 16 49 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 50 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 51 H 0.13 0.81 8.01 -52.49 -0.42 0.39 16 LS Contribution 404.84 15.07 6.10 6.10 Total: -1.00 -31.08 404.84 -9.73 -40.81 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -8.39 Total: 3.85 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -2.01 Total: 1.24 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.24 Total: -52.90 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.17 Total: -15.06 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.08 -9.73 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149896778.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.052 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds