Wall clock time and date at job start Wed Apr 1 2020 04:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47358 * 2 1 4 4 C 1.53006 * 109.47124 * 240.00009 * 2 1 3 5 5 C 1.50694 * 109.47245 * 65.00109 * 4 2 1 6 6 O 1.21287 * 119.99948 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00217 * 180.27232 * 5 4 2 8 8 C 1.46502 * 120.00279 * 179.72342 * 7 5 4 9 9 C 1.53000 * 109.47046 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.46804 * 305.00350 * 9 8 7 11 11 C 1.54809 * 109.46695 * 185.00748 * 9 8 7 12 12 N 1.45122 * 109.53872 * 172.10684 * 11 9 8 13 13 C 1.36932 * 118.75854 * 269.29324 * 12 11 9 14 14 H 1.07993 * 120.00419 * 26.09292 * 13 12 11 15 15 C 1.38811 * 119.99775 * 206.09270 * 13 12 11 16 16 N 1.31618 * 119.99991 * 15.46840 * 15 13 12 17 17 Si 1.86804 * 120.00222 * 195.46706 * 15 13 12 18 18 H 1.48497 * 109.46953 * 89.99930 * 17 15 13 19 19 H 1.48496 * 109.47166 * 210.00130 * 17 15 13 20 20 H 1.48500 * 109.46902 * 330.00178 * 17 15 13 21 21 C 1.47513 * 122.48090 * 89.28932 * 12 11 9 22 22 C 1.53573 * 111.02634 * 318.37262 * 21 12 11 23 23 C 1.51536 * 109.58599 * 320.02500 * 22 21 12 24 24 O 1.38010 * 109.46935 * 64.99857 * 9 8 7 25 25 C 1.50700 * 109.46863 * 120.00258 * 2 1 3 26 26 C 1.38650 * 120.79112 * 59.71632 * 25 2 1 27 27 C 1.38213 * 119.16059 * 179.79516 * 26 25 2 28 28 N 1.31864 * 120.76035 * 0.49336 * 27 26 25 29 29 C 1.31864 * 121.73010 * 359.73649 * 28 27 26 30 30 C 1.38198 * 120.76637 * 0.02562 * 29 28 27 31 31 H 1.09005 * 109.46431 * 60.00330 * 1 2 3 32 32 H 1.09003 * 109.47036 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46952 * 300.00035 * 1 2 3 34 34 H 1.09005 * 109.46637 * 305.00071 * 4 2 1 35 35 H 1.09000 * 109.46818 * 185.00514 * 4 2 1 36 36 H 0.97003 * 119.99739 * 359.72917 * 7 5 4 37 37 H 1.09001 * 109.46955 * 300.00315 * 8 7 5 38 38 H 1.09005 * 109.46601 * 60.00213 * 8 7 5 39 39 H 1.09003 * 109.45726 * 292.12677 * 11 9 8 40 40 H 1.08997 * 109.46046 * 52.08428 * 11 9 8 41 41 H 0.97008 * 120.00302 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.16732 * 197.98314 * 21 12 11 43 43 H 1.09000 * 109.16759 * 78.77340 * 21 12 11 44 44 H 1.09001 * 109.45220 * 199.98772 * 22 21 12 45 45 H 1.09008 * 109.45450 * 80.05817 * 22 21 12 46 46 H 1.09003 * 109.58767 * 331.61398 * 23 22 21 47 47 H 1.09000 * 109.59026 * 211.18659 * 23 22 21 48 48 H 1.07998 * 120.42076 * 0.02562 * 26 25 2 49 49 H 1.07993 * 119.61687 * 180.20698 * 27 26 25 50 50 H 1.08009 * 119.62037 * 180.02562 * 29 28 27 51 51 H 1.08002 * 120.42419 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.6415 0.0570 -2.4766 6 8 1.0110 1.0869 -2.3633 7 7 1.9803 -0.3945 -3.7004 8 6 1.5875 0.3589 -4.8939 9 6 2.0923 -0.3656 -6.1434 10 1 3.1679 -0.5224 -6.0628 11 6 1.7883 0.4926 -7.3955 12 7 2.4275 -0.0991 -8.5563 13 6 3.6970 0.2970 -8.8827 14 1 4.3572 0.6784 -8.1179 15 6 4.1354 0.2082 -10.1967 16 7 3.2661 0.0403 -11.1706 17 14 5.9592 0.3270 -10.5830 18 1 6.5612 -1.0301 -10.5519 19 1 6.1418 0.9187 -11.9327 20 1 6.6244 1.1869 -9.5714 21 6 1.7613 -1.1110 -9.3977 22 6 1.0018 -2.1306 -8.5362 23 6 1.8223 -2.4690 -7.3079 24 8 1.4567 -1.5854 -6.2561 25 6 2.0323 -0.7105 1.2305 26 6 1.7026 -2.0359 1.4690 27 6 2.1853 -2.6558 2.6061 28 7 2.9422 -1.9986 3.4628 29 6 3.2719 -0.7364 3.2707 30 6 2.8304 -0.0525 2.1538 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6054 -1.7198 -1.2951 35 1 3.1264 -0.7995 -1.2055 36 1 2.4841 -1.2185 -3.7910 37 1 0.5010 0.4365 -4.9333 38 1 2.0219 1.3578 -4.8522 39 1 0.7108 0.5328 -7.5553 40 1 2.1708 1.5021 -7.2454 41 1 3.5724 -0.0222 -12.0889 42 1 2.5117 -1.6330 -9.9915 43 1 1.0589 -0.6140 -10.0667 44 1 0.8259 -3.0365 -9.1163 45 1 0.0462 -1.7057 -8.2286 46 1 2.8823 -2.3510 -7.5326 47 1 1.6227 -3.4976 -7.0072 48 1 1.0796 -2.5782 0.7732 49 1 1.9358 -3.6889 2.7975 50 1 3.8943 -0.2310 3.9945 51 1 3.1041 0.9811 2.0018 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149896778.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:10 Heat of formation + Delta-G solvation = -51.500249 kcal Electronic energy + Delta-G solvation = -30358.638686 eV Core-core repulsion = 26257.558688 eV Total energy + Delta-G solvation = -4101.079998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.39977 -40.81639 -40.17522 -37.09113 -36.70065 -35.78369 -33.66285 -33.42307 -32.18413 -31.87021 -30.38939 -28.76917 -27.20421 -26.85488 -25.27129 -24.38069 -24.13089 -22.28992 -21.96311 -21.35503 -20.81863 -18.87356 -18.42630 -17.64545 -17.49880 -17.28815 -17.04138 -16.75876 -16.50099 -16.30656 -16.30158 -15.70251 -15.52605 -15.06004 -14.87797 -14.69472 -14.68146 -14.37594 -14.24360 -14.02799 -13.74966 -13.63897 -13.36486 -13.13394 -13.00298 -12.79161 -12.70392 -12.49319 -12.41843 -12.38154 -12.24680 -12.06982 -11.77072 -11.73252 -11.48621 -11.31436 -10.83005 -10.54502 -10.45645 -10.35258 -10.26970 -10.02462 -10.01732 -8.73522 -7.90312 -5.37793 0.26467 0.33100 1.45092 1.46446 1.54864 1.71028 2.22648 2.48861 2.76985 2.92348 3.24700 3.51712 3.58028 3.66752 3.71425 3.96040 4.05587 4.13865 4.16847 4.21199 4.22369 4.26679 4.29521 4.36470 4.48885 4.54560 4.59752 4.67752 4.69318 4.74619 4.76546 4.81262 4.85648 4.91368 4.96125 4.97175 5.11608 5.14811 5.18015 5.18897 5.24972 5.37275 5.46229 5.49025 5.56789 5.60398 5.74648 5.84338 6.34493 6.62148 6.74950 7.09163 7.13207 7.31651 7.85551 8.26645 9.15224 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.001937 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.095567 B =14451.835726 C =14910.260952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 H 0.079 0.921 4 C -0.125 4.125 5 C 0.510 3.490 6 O -0.578 6.578 7 N -0.715 5.715 8 C 0.143 3.857 9 C 0.087 3.913 10 H 0.045 0.955 11 C 0.122 3.878 12 N -0.606 5.606 13 C -0.268 4.268 14 H 0.068 0.932 15 C -0.047 4.047 16 N -0.935 5.935 17 Si 0.965 3.035 18 H -0.283 1.283 19 H -0.298 1.298 20 H -0.269 1.269 21 C 0.185 3.815 22 C -0.165 4.165 23 C 0.092 3.908 24 O -0.390 6.390 25 C -0.036 4.036 26 C -0.166 4.166 27 C 0.088 3.912 28 N -0.520 5.520 29 C 0.088 3.912 30 C -0.175 4.175 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.413 0.587 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.050 0.950 41 H 0.250 0.750 42 H 0.046 0.954 43 H -0.008 1.008 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.154 0.846 49 H 0.174 0.826 50 H 0.171 0.829 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 -6.755 24.477 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 H 0.097 0.903 4 C -0.165 4.165 5 C 0.298 3.702 6 O -0.459 6.459 7 N -0.366 5.366 8 C 0.019 3.981 9 C 0.025 3.975 10 H 0.063 0.937 11 C -0.006 4.006 12 N -0.328 5.328 13 C -0.398 4.398 14 H 0.086 0.914 15 C -0.243 4.243 16 N -0.580 5.580 17 Si 0.793 3.207 18 H -0.210 1.210 19 H -0.224 1.224 20 H -0.194 1.194 21 C 0.060 3.940 22 C -0.204 4.204 23 C 0.016 3.984 24 O -0.309 6.309 25 C -0.044 4.044 26 C -0.186 4.186 27 C -0.068 4.068 28 N -0.230 5.230 29 C -0.068 4.068 30 C -0.194 4.194 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.010 0.990 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.058 0.942 47 H 0.127 0.873 48 H 0.172 0.828 49 H 0.191 0.809 50 H 0.189 0.811 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.100 -6.503 25.219 26.227 hybrid contribution 0.956 0.640 -2.086 2.382 sum -2.143 -5.863 23.133 23.960 Atomic orbital electron populations 1.21907 0.93592 1.02468 1.02338 1.19815 0.96675 0.98842 0.89651 0.90291 1.21741 1.04220 1.00568 0.89966 1.21116 0.78432 0.85386 0.85219 1.90670 1.41617 1.26435 1.87138 1.45924 1.57464 1.28083 1.05140 1.21129 1.00251 0.94518 0.82242 1.22276 0.95472 0.85435 0.94314 0.93731 1.21580 0.96075 0.95563 0.87362 1.44034 1.14831 1.44565 1.29334 1.19505 0.89760 1.38535 0.92000 0.91420 1.25781 1.01511 1.01309 0.95665 1.70232 1.33715 1.55140 0.98947 0.85306 0.80730 0.77791 0.76852 1.20977 1.22433 1.19413 1.20773 0.94037 0.88465 0.90704 1.22629 0.99545 0.99959 0.98222 1.22068 0.97849 0.92554 0.85936 1.86098 1.65257 1.27966 1.51605 1.20365 0.94394 0.94295 0.95320 1.22239 1.01693 0.95082 0.99558 1.23156 0.92714 1.00884 0.90083 1.67685 1.13555 1.10103 1.31615 1.23094 0.97087 0.90238 0.96423 1.22314 0.99279 1.02312 0.95536 0.92156 0.91534 0.92763 0.86305 0.87126 0.75082 0.91682 0.90582 0.93991 0.93198 0.94132 0.93573 0.98984 0.89741 0.92131 0.94206 0.87301 0.82822 0.80906 0.81146 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.75 71.98 0.63 -1.79 16 2 C -0.03 -0.47 2.24 -11.54 -0.03 -0.49 16 3 H 0.08 1.40 7.76 -2.39 -0.02 1.38 16 4 C -0.13 -1.73 4.93 29.85 0.15 -1.58 16 5 C 0.51 11.22 7.55 87.66 0.66 11.88 16 6 O -0.58 -17.11 13.96 -3.05 -0.04 -17.15 16 7 N -0.71 -15.74 5.49 -463.05 -2.54 -18.28 16 8 C 0.14 3.95 5.34 86.38 0.46 4.41 16 9 C 0.09 2.78 2.68 31.21 0.08 2.87 16 10 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 11 C 0.12 4.87 5.12 87.26 0.45 5.32 16 12 N -0.61 -28.95 2.23 -698.15 -1.55 -30.51 16 13 C -0.27 -14.06 9.46 84.03 0.80 -13.27 16 14 H 0.07 3.46 7.88 -2.91 -0.02 3.44 16 15 C -0.05 -2.55 4.89 84.86 0.41 -2.13 16 16 N -0.93 -53.98 10.99 21.65 0.24 -53.74 16 17 Si 0.96 43.59 29.58 68.60 2.03 45.62 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.19 8.66 4.70 86.38 0.41 9.06 16 22 C -0.16 -5.77 5.78 30.31 0.18 -5.59 16 23 C 0.09 2.88 6.37 71.50 0.46 3.33 16 24 O -0.39 -12.18 9.38 -117.81 -1.11 -13.29 16 25 C -0.04 -0.49 4.80 -19.67 -0.09 -0.59 16 26 C -0.17 -2.01 8.90 22.36 0.20 -1.81 16 27 C 0.09 1.22 11.18 84.68 0.95 2.16 16 28 N -0.52 -9.25 10.36 -195.85 -2.03 -11.28 16 29 C 0.09 1.30 11.18 84.68 0.95 2.24 16 30 C -0.17 -2.39 9.76 22.36 0.22 -2.18 16 31 H 0.06 1.33 5.95 -2.38 -0.01 1.32 16 32 H 0.07 0.89 7.47 -2.39 -0.02 0.87 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.12 1.13 7.68 -2.38 -0.02 1.12 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.41 7.43 8.46 -92.71 -0.78 6.65 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.08 2.16 8.14 -2.38 -0.02 2.15 16 39 H 0.04 1.67 8.11 -2.39 -0.02 1.65 16 40 H 0.05 2.02 7.98 -2.39 -0.02 2.00 16 41 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 42 H 0.05 2.41 6.37 -2.39 -0.02 2.39 16 43 H -0.01 -0.42 8.04 -2.39 -0.02 -0.44 16 44 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.06 2.11 8.01 -2.38 -0.02 2.09 16 46 H 0.04 1.44 7.40 -2.39 -0.02 1.42 16 47 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 48 H 0.15 1.18 7.35 -2.91 -0.02 1.16 16 49 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 50 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 51 H 0.15 1.55 8.01 -2.91 -0.02 1.52 16 Total: -1.00 -68.72 404.84 2.00 -66.73 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.14 Total: 20.05 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 6.87 Total: 11.85 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -5.89 Total: -113.81 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.15 Total: -30.44 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -68.72 2.00 -66.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149896778.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.226 kcal (2) G-P(sol) polarization free energy of solvation -68.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds