Wall clock time and date at job start Wed Apr 1 2020 04:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46504 * 2 1 4 4 C 1.52996 * 109.47234 * 119.99825 * 2 1 3 5 5 C 1.50697 * 109.47279 * 295.00561 * 4 2 1 6 6 O 1.21277 * 120.00257 * 0.02562 * 5 4 2 7 7 N 1.34784 * 120.00167 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00148 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46992 * 180.02562 * 8 7 5 10 10 H 1.09000 * 108.56691 * 60.00387 * 9 8 7 11 11 C 1.46915 * 108.61931 * 177.95009 * 9 8 7 12 12 N 1.50105 * 106.78596 * 178.04431 * 11 9 8 13 13 C 1.36937 * 120.75204 * 111.22421 * 12 11 9 14 14 H 1.07998 * 119.99835 * 155.67586 * 13 12 11 15 15 C 1.38810 * 120.00016 * 335.68210 * 13 12 11 16 16 N 1.31617 * 119.99951 * 340.85499 * 15 13 12 17 17 Si 1.86803 * 119.99822 * 160.85504 * 15 13 12 18 18 H 1.48499 * 109.47189 * 89.99785 * 17 15 13 19 19 H 1.48498 * 109.46845 * 209.99873 * 17 15 13 20 20 H 1.48497 * 109.47189 * 329.99794 * 17 15 13 21 21 C 1.43422 * 118.61087 * 291.15322 * 12 11 9 22 22 C 1.55331 * 116.23987 * 89.40518 * 21 12 11 23 23 C 1.55185 * 108.87167 * 319.46204 * 22 21 12 24 24 O 1.39644 * 110.57121 * 322.14484 * 23 22 21 25 25 C 1.50696 * 109.47291 * 240.00216 * 2 1 3 26 26 C 1.38675 * 120.41556 * 119.99577 * 25 2 1 27 27 C 1.38636 * 118.41620 * 180.22891 * 26 25 2 28 28 C 1.38224 * 119.15960 * 359.52643 * 27 26 25 29 29 N 1.31853 * 120.76560 * 0.48803 * 28 27 26 30 30 C 1.31876 * 121.72629 * 359.74077 * 29 28 27 31 31 H 1.09008 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47638 * 299.99532 * 1 2 3 33 33 H 1.08993 * 109.47438 * 60.00253 * 1 2 3 34 34 H 1.09007 * 109.46910 * 55.00714 * 4 2 1 35 35 H 1.08996 * 109.47039 * 175.00325 * 4 2 1 36 36 H 0.97005 * 119.99442 * 0.02562 * 7 5 4 37 37 H 1.08995 * 109.47358 * 300.00745 * 8 7 5 38 38 H 1.09003 * 109.46634 * 60.00261 * 8 7 5 39 39 H 1.09001 * 109.99057 * 297.23653 * 11 9 8 40 40 H 1.08995 * 109.99212 * 58.60328 * 11 9 8 41 41 H 0.97003 * 120.00028 * 180.02562 * 16 15 13 42 42 H 1.08993 * 108.12960 * 327.64402 * 21 12 11 43 43 H 1.09005 * 108.12827 * 211.15822 * 21 12 11 44 44 H 1.09002 * 109.57118 * 199.65013 * 22 21 12 45 45 H 1.08994 * 109.57516 * 79.28047 * 22 21 12 46 46 H 1.08999 * 109.25884 * 201.86773 * 23 22 21 47 47 H 1.09002 * 109.26100 * 82.42580 * 23 22 21 48 48 H 1.08000 * 120.79024 * 359.95430 * 26 25 2 49 49 H 1.07999 * 120.41693 * 179.74770 * 27 26 25 50 50 H 1.08002 * 119.61054 * 180.22854 * 28 27 26 51 51 H 1.08001 * 119.62256 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4765 6 8 1.0108 1.0868 2.3633 7 7 1.9844 -0.3919 3.7002 8 6 1.5973 0.3649 4.8933 9 6 2.1072 -0.3564 6.1425 10 1 3.1933 -0.4268 6.0836 11 6 1.7522 0.4425 7.3233 12 7 2.2269 -0.3235 8.5237 13 6 3.2684 0.1394 9.2828 14 1 3.3590 -0.1615 10.3160 15 6 4.2075 0.9955 8.7242 16 7 4.3340 1.0705 7.4163 17 14 5.2918 2.0412 9.8289 18 1 6.5329 1.2939 10.1552 19 1 5.6431 3.3020 9.1276 20 1 4.5613 2.3589 11.0822 21 6 1.5658 -1.5508 8.8608 22 6 2.1360 -2.8399 8.2081 23 6 2.5056 -2.5339 6.7323 24 8 1.5666 -1.6735 6.1595 25 6 2.0324 -0.7103 -1.2304 26 6 2.8301 -0.0446 -2.1489 27 6 3.2652 -0.7366 -3.2687 28 6 2.9002 -2.0605 -3.4262 29 7 2.1402 -2.6616 -2.5320 30 6 1.7043 -2.0333 -1.4576 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8899 34 1 1.6055 -1.7198 1.2951 35 1 3.1263 -0.7993 1.2056 36 1 2.4884 -1.2158 3.7908 37 1 2.0324 1.3632 4.8474 38 1 0.5110 0.4438 4.9368 39 1 2.2499 1.4113 7.2811 40 1 0.6718 0.5791 7.3696 41 1 4.9905 1.6685 7.0260 42 1 0.5178 -1.4611 8.5750 43 1 1.6071 -1.6721 9.9433 44 1 1.3843 -3.6286 8.2402 45 1 3.0267 -3.1596 8.7488 46 1 2.5307 -3.4658 6.1674 47 1 3.4897 -2.0665 6.6975 48 1 3.1022 0.9895 -1.9977 49 1 3.8845 -0.2485 -4.0067 50 1 3.2382 -2.6075 -4.2939 51 1 1.0838 -2.5588 -0.7468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150402785.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:04 Heat of formation + Delta-G solvation = -25.539842 kcal Electronic energy + Delta-G solvation = -30932.393685 eV Core-core repulsion = 26832.439414 eV Total energy + Delta-G solvation = -4099.954271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.65011 -39.64848 -38.80506 -35.76408 -35.02036 -34.43417 -32.48841 -32.21261 -31.25726 -30.34595 -28.89025 -27.80310 -25.41695 -25.25012 -24.28138 -23.73625 -22.57948 -20.94758 -20.81508 -19.79132 -19.58411 -17.54973 -17.19183 -16.91522 -16.44841 -16.09140 -15.63170 -15.23341 -15.19206 -14.86757 -14.55881 -14.29842 -14.21904 -13.93384 -13.77231 -13.58389 -13.30943 -13.17378 -12.95740 -12.92422 -12.59915 -12.38886 -12.08056 -11.92923 -11.48419 -11.41147 -11.38771 -11.21564 -11.01570 -10.86513 -10.75568 -10.52117 -10.18757 -10.05087 -9.99406 -9.73064 -9.68002 -9.57987 -9.49927 -9.18948 -8.82690 -8.67088 -8.52776 -6.84651 -5.95222 -3.33462 0.84011 1.02348 2.86554 3.30487 3.38946 3.41275 3.43086 3.58679 4.17475 4.40966 4.46761 4.51468 4.67594 4.69408 4.74916 4.84639 4.94947 5.06997 5.21658 5.25767 5.29274 5.33534 5.46270 5.54608 5.59157 5.70073 5.79411 5.80445 5.82414 5.89774 5.96360 5.98594 6.12339 6.16553 6.29131 6.31270 6.39153 6.43827 6.45869 6.56547 6.64670 6.68700 6.79494 6.90949 6.93766 7.09619 7.29921 7.69141 7.71699 7.81216 8.10672 8.29358 8.48667 9.04285 9.72497 10.26862 11.13969 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.002228 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.142522 B =12563.247523 C =13184.629377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.030 4.030 3 H 0.089 0.911 4 C -0.136 4.136 5 C 0.510 3.490 6 O -0.547 6.547 7 N -0.714 5.714 8 C 0.121 3.879 9 C 0.060 3.940 10 H 0.107 0.893 11 C 0.143 3.857 12 N -0.587 5.587 13 C -0.248 4.248 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.908 5.908 17 Si 0.904 3.096 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.160 3.840 22 C -0.172 4.172 23 C 0.067 3.933 24 O -0.370 6.370 25 C -0.124 4.124 26 C -0.073 4.073 27 C -0.171 4.171 28 C 0.088 3.912 29 N -0.484 5.484 30 C 0.103 3.897 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.400 0.600 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.019 0.981 41 H 0.255 0.745 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.062 0.938 48 H 0.135 0.865 49 H 0.134 0.866 50 H 0.153 0.847 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 -5.070 -17.451 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.050 4.050 3 H 0.107 0.893 4 C -0.176 4.176 5 C 0.296 3.704 6 O -0.425 6.425 7 N -0.364 5.364 8 C -0.003 4.003 9 C 0.002 3.998 10 H 0.124 0.876 11 C 0.018 3.982 12 N -0.308 5.308 13 C -0.377 4.377 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.553 5.553 17 Si 0.734 3.266 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.206 1.206 21 C 0.032 3.968 22 C -0.213 4.213 23 C -0.011 4.011 24 O -0.288 6.288 25 C -0.126 4.126 26 C -0.099 4.099 27 C -0.191 4.191 28 C -0.069 4.069 29 N -0.192 5.192 30 C -0.054 4.054 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.234 0.766 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.037 0.963 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.152 0.848 49 H 0.152 0.848 50 H 0.171 0.829 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.528 -5.124 -17.764 18.822 hybrid contribution 1.556 0.929 0.759 1.964 sum -1.972 -4.196 -17.005 17.626 Atomic orbital electron populations 1.21979 0.93342 1.01866 1.03503 1.19819 0.96946 0.99169 0.89038 0.89257 1.21754 1.03027 1.00281 0.92516 1.20470 0.79558 0.85740 0.84640 1.90649 1.40427 1.24780 1.86693 1.45964 1.56949 1.27626 1.05832 1.21690 0.99874 0.95475 0.83249 1.22199 1.00737 0.83144 0.93742 0.87579 1.20744 0.94991 0.97462 0.85024 1.44096 1.37054 1.18630 1.30987 1.19247 1.01231 1.24731 0.92506 0.91325 1.24897 0.97235 1.01883 0.95591 1.69861 1.36689 1.39779 1.08999 0.86274 0.80222 0.80077 0.80065 1.21547 1.21533 1.20576 1.20370 0.94568 0.85435 0.96475 1.23579 1.00478 1.00133 0.97134 1.22341 0.92883 0.92864 0.92966 1.87512 1.42278 1.18453 1.80564 1.20980 0.98291 0.95752 0.97535 1.21586 0.94870 1.00357 0.93088 1.22154 1.01798 0.96241 0.98885 1.22755 0.94180 0.92386 0.97546 1.67697 1.10032 1.38848 1.02638 1.22654 0.96879 0.91508 0.94387 0.93026 0.89682 0.92902 0.88796 0.88921 0.76602 0.90458 0.92057 0.87841 0.96254 0.93498 0.95035 0.94923 0.93178 0.92505 0.93115 0.91941 0.84755 0.84850 0.82950 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.75 37.16 0.33 -1.24 16 2 C -0.03 -0.30 2.22 -91.77 -0.20 -0.51 16 3 H 0.09 0.98 7.74 -51.93 -0.40 0.58 16 4 C -0.14 -1.39 4.92 -27.89 -0.14 -1.53 16 5 C 0.51 7.29 7.55 -10.98 -0.08 7.20 16 6 O -0.55 -9.51 13.96 5.56 0.08 -9.44 16 7 N -0.71 -10.67 5.41 -60.30 -0.33 -11.00 16 8 C 0.12 2.15 5.25 -4.04 -0.02 2.13 16 9 C 0.06 1.19 1.98 -29.65 -0.06 1.13 16 10 H 0.11 2.36 5.24 -51.93 -0.27 2.09 16 11 C 0.14 3.17 4.71 -4.94 -0.02 3.14 16 12 N -0.59 -13.85 2.61 -174.52 -0.46 -14.30 16 13 C -0.25 -6.37 9.62 -15.06 -0.14 -6.51 16 14 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 15 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 16 N -0.91 -23.32 9.57 55.49 0.53 -22.79 16 17 Si 0.90 20.64 29.60 -169.99 -5.03 15.61 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.16 3.34 5.32 -4.43 -0.02 3.31 16 22 C -0.17 -3.15 6.75 -24.34 -0.16 -3.31 16 23 C 0.07 1.22 6.38 38.31 0.24 1.47 16 24 O -0.37 -6.99 9.44 -31.95 -0.30 -7.29 16 25 C -0.12 -1.16 4.79 -104.48 -0.50 -1.66 16 26 C -0.07 -0.62 9.81 -39.27 -0.39 -1.00 16 27 C -0.17 -1.30 10.11 -39.44 -0.40 -1.70 16 28 C 0.09 0.76 11.18 -17.55 -0.20 0.56 16 29 N -0.48 -5.20 10.36 -13.25 -0.14 -5.34 16 30 C 0.10 1.01 9.95 -17.55 -0.17 0.84 16 31 H 0.05 0.48 7.42 -51.92 -0.39 0.09 16 32 H 0.08 1.10 5.95 -51.93 -0.31 0.79 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.81 7.59 -51.93 -0.39 0.42 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.40 5.39 8.26 -40.82 -0.34 5.05 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.10 2.53 6.03 -51.93 -0.31 2.21 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 42 H 0.03 0.64 7.98 -51.93 -0.41 0.23 16 43 H 0.03 0.67 7.96 -51.93 -0.41 0.26 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 1.28 6.66 -51.93 -0.35 0.93 16 48 H 0.13 0.93 8.00 -52.49 -0.42 0.51 16 49 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 50 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 51 H 0.15 1.29 7.19 -52.49 -0.38 0.92 16 LS Contribution 399.96 15.07 6.03 6.03 Total: -1.00 -29.02 399.96 -9.81 -38.83 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -8.16 Total: 7.41 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.03 Total: 2.27 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.39 Total: -53.43 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.22 Total: -16.72 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.02 -9.81 -38.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150402785.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.292 kcal (2) G-P(sol) polarization free energy of solvation -29.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds