Wall clock time and date at job start Wed Apr 1 2020 04:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46504 * 2 1 4 4 C 1.52996 * 109.47234 * 119.99825 * 2 1 3 5 5 C 1.50697 * 109.47279 * 295.00561 * 4 2 1 6 6 O 1.21277 * 120.00257 * 0.02562 * 5 4 2 7 7 N 1.34784 * 120.00167 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00148 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46992 * 180.02562 * 8 7 5 10 10 H 1.09000 * 108.56691 * 60.00387 * 9 8 7 11 11 C 1.46915 * 108.61931 * 177.95009 * 9 8 7 12 12 N 1.50105 * 106.78596 * 178.04431 * 11 9 8 13 13 C 1.36937 * 120.75204 * 111.22421 * 12 11 9 14 14 H 1.07998 * 119.99835 * 155.67586 * 13 12 11 15 15 C 1.38810 * 120.00016 * 335.68210 * 13 12 11 16 16 N 1.31617 * 119.99951 * 340.85499 * 15 13 12 17 17 Si 1.86803 * 119.99822 * 160.85504 * 15 13 12 18 18 H 1.48499 * 109.47189 * 89.99785 * 17 15 13 19 19 H 1.48498 * 109.46845 * 209.99873 * 17 15 13 20 20 H 1.48497 * 109.47189 * 329.99794 * 17 15 13 21 21 C 1.43422 * 118.61087 * 291.15322 * 12 11 9 22 22 C 1.55331 * 116.23987 * 89.40518 * 21 12 11 23 23 C 1.55185 * 108.87167 * 319.46204 * 22 21 12 24 24 O 1.39644 * 110.57121 * 322.14484 * 23 22 21 25 25 C 1.50696 * 109.47291 * 240.00216 * 2 1 3 26 26 C 1.38675 * 120.41556 * 119.99577 * 25 2 1 27 27 C 1.38636 * 118.41620 * 180.22891 * 26 25 2 28 28 C 1.38224 * 119.15960 * 359.52643 * 27 26 25 29 29 N 1.31853 * 120.76560 * 0.48803 * 28 27 26 30 30 C 1.31876 * 121.72629 * 359.74077 * 29 28 27 31 31 H 1.09008 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47638 * 299.99532 * 1 2 3 33 33 H 1.08993 * 109.47438 * 60.00253 * 1 2 3 34 34 H 1.09007 * 109.46910 * 55.00714 * 4 2 1 35 35 H 1.08996 * 109.47039 * 175.00325 * 4 2 1 36 36 H 0.97005 * 119.99442 * 0.02562 * 7 5 4 37 37 H 1.08995 * 109.47358 * 300.00745 * 8 7 5 38 38 H 1.09003 * 109.46634 * 60.00261 * 8 7 5 39 39 H 1.09001 * 109.99057 * 297.23653 * 11 9 8 40 40 H 1.08995 * 109.99212 * 58.60328 * 11 9 8 41 41 H 0.97003 * 120.00028 * 180.02562 * 16 15 13 42 42 H 1.08993 * 108.12960 * 327.64402 * 21 12 11 43 43 H 1.09005 * 108.12827 * 211.15822 * 21 12 11 44 44 H 1.09002 * 109.57118 * 199.65013 * 22 21 12 45 45 H 1.08994 * 109.57516 * 79.28047 * 22 21 12 46 46 H 1.08999 * 109.25884 * 201.86773 * 23 22 21 47 47 H 1.09002 * 109.26100 * 82.42580 * 23 22 21 48 48 H 1.08000 * 120.79024 * 359.95430 * 26 25 2 49 49 H 1.07999 * 120.41693 * 179.74770 * 27 26 25 50 50 H 1.08002 * 119.61054 * 180.22854 * 28 27 26 51 51 H 1.08001 * 119.62256 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4765 6 8 1.0108 1.0868 2.3633 7 7 1.9844 -0.3919 3.7002 8 6 1.5973 0.3649 4.8933 9 6 2.1072 -0.3564 6.1425 10 1 3.1933 -0.4268 6.0836 11 6 1.7522 0.4425 7.3233 12 7 2.2269 -0.3235 8.5237 13 6 3.2684 0.1394 9.2828 14 1 3.3590 -0.1615 10.3160 15 6 4.2075 0.9955 8.7242 16 7 4.3340 1.0705 7.4163 17 14 5.2918 2.0412 9.8289 18 1 6.5329 1.2939 10.1552 19 1 5.6431 3.3020 9.1276 20 1 4.5613 2.3589 11.0822 21 6 1.5658 -1.5508 8.8608 22 6 2.1360 -2.8399 8.2081 23 6 2.5056 -2.5339 6.7323 24 8 1.5666 -1.6735 6.1595 25 6 2.0324 -0.7103 -1.2304 26 6 2.8301 -0.0446 -2.1489 27 6 3.2652 -0.7366 -3.2687 28 6 2.9002 -2.0605 -3.4262 29 7 2.1402 -2.6616 -2.5320 30 6 1.7043 -2.0333 -1.4576 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8899 34 1 1.6055 -1.7198 1.2951 35 1 3.1263 -0.7993 1.2056 36 1 2.4884 -1.2158 3.7908 37 1 2.0324 1.3632 4.8474 38 1 0.5110 0.4438 4.9368 39 1 2.2499 1.4113 7.2811 40 1 0.6718 0.5791 7.3696 41 1 4.9905 1.6685 7.0260 42 1 0.5178 -1.4611 8.5750 43 1 1.6071 -1.6721 9.9433 44 1 1.3843 -3.6286 8.2402 45 1 3.0267 -3.1596 8.7488 46 1 2.5307 -3.4658 6.1674 47 1 3.4897 -2.0665 6.6975 48 1 3.1022 0.9895 -1.9977 49 1 3.8845 -0.2485 -4.0067 50 1 3.2382 -2.6075 -4.2939 51 1 1.0838 -2.5588 -0.7468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150402785.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:03 Heat of formation + Delta-G solvation = -42.427278 kcal Electronic energy + Delta-G solvation = -30933.125979 eV Core-core repulsion = 26832.439414 eV Total energy + Delta-G solvation = -4100.686565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.43461 -40.90303 -40.18825 -36.84585 -36.59060 -35.75376 -33.84866 -33.14781 -32.95184 -31.15550 -30.33664 -28.93520 -27.06230 -26.78581 -25.10493 -24.45766 -24.10216 -22.38028 -21.90386 -21.30678 -20.81023 -18.93804 -18.36585 -17.83393 -17.67740 -17.30318 -16.89266 -16.64512 -16.44558 -16.12096 -15.85974 -15.59955 -15.49873 -15.05245 -14.86404 -14.74389 -14.60353 -14.18725 -14.08963 -13.93375 -13.82208 -13.71248 -13.54533 -13.28829 -13.05487 -12.83089 -12.60709 -12.49919 -12.31455 -12.23368 -12.21706 -11.92348 -11.80774 -11.76600 -11.36682 -11.18132 -10.79517 -10.69785 -10.55723 -10.33344 -10.25755 -9.98084 -9.85779 -8.71118 -7.89688 -5.29843 0.19908 0.37960 1.46647 1.51294 1.58416 1.72408 2.28606 2.52368 2.90284 3.13125 3.27920 3.49389 3.53742 3.69087 3.80451 4.01818 4.08203 4.12523 4.14236 4.21728 4.28657 4.33231 4.38370 4.44185 4.48468 4.58532 4.68017 4.69302 4.74953 4.79350 4.80209 4.82372 4.91708 4.97676 5.04437 5.09486 5.15123 5.19179 5.19386 5.26267 5.34692 5.36464 5.41771 5.45680 5.50428 5.58581 5.68431 5.82150 6.36480 6.53159 6.64619 7.06865 7.11095 7.33015 7.83434 8.36385 9.16262 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.002228 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.142522 B =12563.247523 C =13184.629377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.023 4.023 3 H 0.077 0.923 4 C -0.126 4.126 5 C 0.508 3.492 6 O -0.580 6.580 7 N -0.711 5.711 8 C 0.135 3.865 9 C 0.080 3.920 10 H 0.084 0.916 11 C 0.144 3.856 12 N -0.601 5.601 13 C -0.263 4.263 14 H 0.062 0.938 15 C -0.037 4.037 16 N -0.916 5.916 17 Si 0.958 3.042 18 H -0.288 1.288 19 H -0.293 1.293 20 H -0.280 1.280 21 C 0.154 3.846 22 C -0.165 4.165 23 C 0.068 3.932 24 O -0.366 6.366 25 C -0.128 4.128 26 C -0.082 4.082 27 C -0.167 4.167 28 C 0.079 3.921 29 N -0.511 5.511 30 C 0.092 3.908 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.409 0.591 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.023 0.977 41 H 0.251 0.749 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.078 0.922 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.036 0.964 48 H 0.147 0.853 49 H 0.161 0.839 50 H 0.176 0.824 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 -6.461 -18.906 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.043 4.043 3 H 0.096 0.904 4 C -0.165 4.165 5 C 0.297 3.703 6 O -0.461 6.461 7 N -0.362 5.362 8 C 0.009 3.991 9 C 0.021 3.979 10 H 0.102 0.898 11 C 0.019 3.981 12 N -0.323 5.323 13 C -0.392 4.392 14 H 0.080 0.920 15 C -0.233 4.233 16 N -0.562 5.562 17 Si 0.788 3.212 18 H -0.215 1.215 19 H -0.220 1.220 20 H -0.205 1.205 21 C 0.026 3.974 22 C -0.206 4.206 23 C -0.009 4.009 24 O -0.284 6.284 25 C -0.130 4.130 26 C -0.108 4.108 27 C -0.186 4.186 28 C -0.078 4.078 29 N -0.220 5.220 30 C -0.064 4.064 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.245 0.755 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.042 0.958 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.054 0.946 48 H 0.165 0.835 49 H 0.179 0.821 50 H 0.193 0.807 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.147 -6.551 -19.222 20.550 hybrid contribution 1.403 1.356 1.203 2.293 sum -1.744 -5.195 -18.018 18.833 Atomic orbital electron populations 1.21912 0.93807 1.02291 1.02300 1.19693 0.96508 0.98637 0.89421 0.90428 1.21764 1.04061 1.00514 0.90200 1.21174 0.78496 0.85441 0.85231 1.90643 1.41843 1.26430 1.87136 1.45885 1.57190 1.27771 1.05314 1.21307 0.99197 0.94717 0.83841 1.21739 0.99227 0.83462 0.93483 0.89833 1.20675 0.94712 0.96784 0.85923 1.44213 1.36831 1.19928 1.31307 1.19380 1.01872 1.25385 0.92608 0.91992 1.25466 0.98434 1.02731 0.96676 1.69989 1.36814 1.39709 1.09703 0.85427 0.78756 0.78448 0.78599 1.21478 1.21970 1.20518 1.20487 0.94601 0.85690 0.96652 1.23496 1.01015 0.99278 0.96824 1.22393 0.91278 0.93766 0.93493 1.87511 1.42429 1.17929 1.80556 1.20852 0.99011 0.95696 0.97431 1.21867 0.94564 1.01121 0.93208 1.22452 1.01344 0.95867 0.98941 1.23227 0.93604 0.93117 0.97808 1.67710 1.11136 1.39765 1.03404 1.22803 0.97229 0.91743 0.94637 0.91784 0.92306 0.92574 0.86560 0.87382 0.75511 0.92285 0.92545 0.90434 0.95849 0.94002 0.94741 0.95211 0.90340 0.92821 0.89491 0.94589 0.83506 0.82108 0.80737 0.82061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.75 71.98 0.63 -2.33 16 2 C -0.02 -0.44 2.22 -11.54 -0.03 -0.46 16 3 H 0.08 1.66 7.74 -2.38 -0.02 1.64 16 4 C -0.13 -2.38 4.92 29.85 0.15 -2.23 16 5 C 0.51 14.25 7.55 87.65 0.66 14.91 16 6 O -0.58 -20.42 13.96 -3.02 -0.04 -20.46 16 7 N -0.71 -20.87 5.41 -463.07 -2.51 -23.38 16 8 C 0.13 4.85 5.25 86.38 0.45 5.30 16 9 C 0.08 3.17 1.98 28.71 0.06 3.22 16 10 H 0.08 3.78 5.24 -2.39 -0.01 3.77 16 11 C 0.14 6.51 4.71 83.79 0.39 6.91 16 12 N -0.60 -28.61 2.61 -706.05 -1.84 -30.46 16 13 C -0.26 -13.66 9.62 84.03 0.81 -12.85 16 14 H 0.06 3.23 7.88 -2.91 -0.02 3.21 16 15 C -0.04 -1.90 4.93 84.86 0.42 -1.48 16 16 N -0.92 -47.95 9.57 21.65 0.21 -47.74 16 17 Si 0.96 42.87 29.60 68.60 2.03 44.90 16 18 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 C 0.15 6.29 5.32 87.75 0.47 6.75 16 22 C -0.17 -5.73 6.75 32.14 0.22 -5.52 16 23 C 0.07 2.36 6.38 72.73 0.46 2.82 16 24 O -0.37 -13.36 9.44 -137.23 -1.30 -14.65 16 25 C -0.13 -2.19 4.79 -19.77 -0.09 -2.29 16 26 C -0.08 -1.22 9.81 22.47 0.22 -1.00 16 27 C -0.17 -2.11 10.11 22.36 0.23 -1.89 16 28 C 0.08 1.19 11.18 84.69 0.95 2.13 16 29 N -0.51 -10.14 10.36 -195.85 -2.03 -12.17 16 30 C 0.09 1.67 9.95 84.67 0.84 2.51 16 31 H 0.06 1.11 7.42 -2.38 -0.02 1.09 16 32 H 0.06 1.53 5.95 -2.39 -0.01 1.51 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.12 1.72 7.59 -2.38 -0.02 1.70 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.41 10.50 8.26 -92.70 -0.77 9.73 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.08 3.92 6.03 -2.39 -0.01 3.91 16 40 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.25 12.96 8.31 -92.71 -0.77 12.19 16 42 H 0.03 1.37 7.98 -2.39 -0.02 1.35 16 43 H 0.03 1.21 7.96 -2.38 -0.02 1.19 16 44 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.04 1.45 6.66 -2.39 -0.02 1.43 16 48 H 0.15 1.75 8.00 -2.91 -0.02 1.73 16 49 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 50 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 51 H 0.16 2.44 7.19 -2.91 -0.02 2.42 16 Total: -1.00 -62.97 399.96 1.52 -61.45 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.17 Total: 28.00 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 6.83 Total: 14.51 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -6.17 Total: -113.75 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.34 Total: -35.11 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -62.97 1.52 -61.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150402785.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.024 kcal (2) G-P(sol) polarization free energy of solvation -62.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds