Wall clock time and date at job start Wed Apr 1 2020 04:31:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09005 * 109.46504 * 2 1
4 4 C 1.52996 * 109.47234 * 119.99825 * 2 1 3
5 5 C 1.50697 * 109.47279 * 295.00561 * 4 2 1
6 6 O 1.21277 * 120.00257 * 0.02562 * 5 4 2
7 7 N 1.34784 * 120.00167 * 179.97438 * 5 4 2
8 8 C 1.46497 * 120.00148 * 179.97438 * 7 5 4
9 9 C 1.53001 * 109.46992 * 180.02562 * 8 7 5
10 10 H 1.09000 * 108.56691 * 60.00387 * 9 8 7
11 11 C 1.46915 * 108.61931 * 177.95009 * 9 8 7
12 12 N 1.50105 * 106.78596 * 178.04431 * 11 9 8
13 13 C 1.36937 * 120.75204 * 111.22421 * 12 11 9
14 14 H 1.07998 * 119.99835 * 155.67586 * 13 12 11
15 15 C 1.38810 * 120.00016 * 335.68210 * 13 12 11
16 16 N 1.31617 * 119.99951 * 340.85499 * 15 13 12
17 17 Si 1.86803 * 119.99822 * 160.85504 * 15 13 12
18 18 H 1.48499 * 109.47189 * 89.99785 * 17 15 13
19 19 H 1.48498 * 109.46845 * 209.99873 * 17 15 13
20 20 H 1.48497 * 109.47189 * 329.99794 * 17 15 13
21 21 C 1.43422 * 118.61087 * 291.15322 * 12 11 9
22 22 C 1.55331 * 116.23987 * 89.40518 * 21 12 11
23 23 C 1.55185 * 108.87167 * 319.46204 * 22 21 12
24 24 O 1.39644 * 110.57121 * 322.14484 * 23 22 21
25 25 C 1.50696 * 109.47291 * 240.00216 * 2 1 3
26 26 C 1.38675 * 120.41556 * 119.99577 * 25 2 1
27 27 C 1.38636 * 118.41620 * 180.22891 * 26 25 2
28 28 C 1.38224 * 119.15960 * 359.52643 * 27 26 25
29 29 N 1.31853 * 120.76560 * 0.48803 * 28 27 26
30 30 C 1.31876 * 121.72629 * 359.74077 * 29 28 27
31 31 H 1.09008 * 109.46877 * 179.97438 * 1 2 3
32 32 H 1.09003 * 109.47638 * 299.99532 * 1 2 3
33 33 H 1.08993 * 109.47438 * 60.00253 * 1 2 3
34 34 H 1.09007 * 109.46910 * 55.00714 * 4 2 1
35 35 H 1.08996 * 109.47039 * 175.00325 * 4 2 1
36 36 H 0.97005 * 119.99442 * 0.02562 * 7 5 4
37 37 H 1.08995 * 109.47358 * 300.00745 * 8 7 5
38 38 H 1.09003 * 109.46634 * 60.00261 * 8 7 5
39 39 H 1.09001 * 109.99057 * 297.23653 * 11 9 8
40 40 H 1.08995 * 109.99212 * 58.60328 * 11 9 8
41 41 H 0.97003 * 120.00028 * 180.02562 * 16 15 13
42 42 H 1.08993 * 108.12960 * 327.64402 * 21 12 11
43 43 H 1.09005 * 108.12827 * 211.15822 * 21 12 11
44 44 H 1.09002 * 109.57118 * 199.65013 * 22 21 12
45 45 H 1.08994 * 109.57516 * 79.28047 * 22 21 12
46 46 H 1.08999 * 109.25884 * 201.86773 * 23 22 21
47 47 H 1.09002 * 109.26100 * 82.42580 * 23 22 21
48 48 H 1.08000 * 120.79024 * 359.95430 * 26 25 2
49 49 H 1.07999 * 120.41693 * 179.74770 * 27 26 25
50 50 H 1.08002 * 119.61054 * 180.22854 * 28 27 26
51 51 H 1.08001 * 119.62256 * 180.02562 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 1.6413 0.0570 2.4765
6 8 1.0108 1.0868 2.3633
7 7 1.9844 -0.3919 3.7002
8 6 1.5973 0.3649 4.8933
9 6 2.1072 -0.3564 6.1425
10 1 3.1933 -0.4268 6.0836
11 6 1.7522 0.4425 7.3233
12 7 2.2269 -0.3235 8.5237
13 6 3.2684 0.1394 9.2828
14 1 3.3590 -0.1615 10.3160
15 6 4.2075 0.9955 8.7242
16 7 4.3340 1.0705 7.4163
17 14 5.2918 2.0412 9.8289
18 1 6.5329 1.2939 10.1552
19 1 5.6431 3.3020 9.1276
20 1 4.5613 2.3589 11.0822
21 6 1.5658 -1.5508 8.8608
22 6 2.1360 -2.8399 8.2081
23 6 2.5056 -2.5339 6.7323
24 8 1.5666 -1.6735 6.1595
25 6 2.0324 -0.7103 -1.2304
26 6 2.8301 -0.0446 -2.1489
27 6 3.2652 -0.7366 -3.2687
28 6 2.9002 -2.0605 -3.4262
29 7 2.1402 -2.6616 -2.5320
30 6 1.7043 -2.0333 -1.4576
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8900
33 1 -0.3634 0.5137 -0.8899
34 1 1.6055 -1.7198 1.2951
35 1 3.1263 -0.7993 1.2056
36 1 2.4884 -1.2158 3.7908
37 1 2.0324 1.3632 4.8474
38 1 0.5110 0.4438 4.9368
39 1 2.2499 1.4113 7.2811
40 1 0.6718 0.5791 7.3696
41 1 4.9905 1.6685 7.0260
42 1 0.5178 -1.4611 8.5750
43 1 1.6071 -1.6721 9.9433
44 1 1.3843 -3.6286 8.2402
45 1 3.0267 -3.1596 8.7488
46 1 2.5307 -3.4658 6.1674
47 1 3.4897 -2.0665 6.6975
48 1 3.1022 0.9895 -1.9977
49 1 3.8845 -0.2485 -4.0067
50 1 3.2382 -2.6075 -4.2939
51 1 1.0838 -2.5588 -0.7468
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001150402785.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:31:03
Heat of formation + Delta-G solvation = -42.427278 kcal
Electronic energy + Delta-G solvation = -30933.125979 eV
Core-core repulsion = 26832.439414 eV
Total energy + Delta-G solvation = -4100.686565 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.43461 -40.90303 -40.18825 -36.84585 -36.59060 -35.75376 -33.84866 -33.14781
-32.95184 -31.15550 -30.33664 -28.93520 -27.06230 -26.78581 -25.10493 -24.45766
-24.10216 -22.38028 -21.90386 -21.30678 -20.81023 -18.93804 -18.36585 -17.83393
-17.67740 -17.30318 -16.89266 -16.64512 -16.44558 -16.12096 -15.85974 -15.59955
-15.49873 -15.05245 -14.86404 -14.74389 -14.60353 -14.18725 -14.08963 -13.93375
-13.82208 -13.71248 -13.54533 -13.28829 -13.05487 -12.83089 -12.60709 -12.49919
-12.31455 -12.23368 -12.21706 -11.92348 -11.80774 -11.76600 -11.36682 -11.18132
-10.79517 -10.69785 -10.55723 -10.33344 -10.25755 -9.98084 -9.85779 -8.71118
-7.89688 -5.29843 0.19908 0.37960 1.46647 1.51294 1.58416 1.72408
2.28606 2.52368 2.90284 3.13125 3.27920 3.49389 3.53742 3.69087
3.80451 4.01818 4.08203 4.12523 4.14236 4.21728 4.28657 4.33231
4.38370 4.44185 4.48468 4.58532 4.68017 4.69302 4.74953 4.79350
4.80209 4.82372 4.91708 4.97676 5.04437 5.09486 5.15123 5.19179
5.19386 5.26267 5.34692 5.36464 5.41771 5.45680 5.50428 5.58581
5.68431 5.82150 6.36480 6.53159 6.64619 7.06865 7.11095 7.33015
7.83434 8.36385 9.16262
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.015664 B = 0.002228 C = 0.002123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1787.142522 B =12563.247523 C =13184.629377
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.023 4.023
3 H 0.077 0.923
4 C -0.126 4.126
5 C 0.508 3.492
6 O -0.580 6.580
7 N -0.711 5.711
8 C 0.135 3.865
9 C 0.080 3.920
10 H 0.084 0.916
11 C 0.144 3.856
12 N -0.601 5.601
13 C -0.263 4.263
14 H 0.062 0.938
15 C -0.037 4.037
16 N -0.916 5.916
17 Si 0.958 3.042
18 H -0.288 1.288
19 H -0.293 1.293
20 H -0.280 1.280
21 C 0.154 3.846
22 C -0.165 4.165
23 C 0.068 3.932
24 O -0.366 6.366
25 C -0.128 4.128
26 C -0.082 4.082
27 C -0.167 4.167
28 C 0.079 3.921
29 N -0.511 5.511
30 C 0.092 3.908
31 H 0.063 0.937
32 H 0.058 0.942
33 H 0.055 0.945
34 H 0.116 0.884
35 H 0.108 0.892
36 H 0.409 0.591
37 H 0.059 0.941
38 H 0.056 0.944
39 H 0.077 0.923
40 H 0.023 0.977
41 H 0.251 0.749
42 H 0.034 0.966
43 H 0.030 0.970
44 H 0.078 0.922
45 H 0.053 0.947
46 H 0.087 0.913
47 H 0.036 0.964
48 H 0.147 0.853
49 H 0.161 0.839
50 H 0.176 0.824
51 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.376 -6.461 -18.906 20.121
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.043 4.043
3 H 0.096 0.904
4 C -0.165 4.165
5 C 0.297 3.703
6 O -0.461 6.461
7 N -0.362 5.362
8 C 0.009 3.991
9 C 0.021 3.979
10 H 0.102 0.898
11 C 0.019 3.981
12 N -0.323 5.323
13 C -0.392 4.392
14 H 0.080 0.920
15 C -0.233 4.233
16 N -0.562 5.562
17 Si 0.788 3.212
18 H -0.215 1.215
19 H -0.220 1.220
20 H -0.205 1.205
21 C 0.026 3.974
22 C -0.206 4.206
23 C -0.009 4.009
24 O -0.284 6.284
25 C -0.130 4.130
26 C -0.108 4.108
27 C -0.186 4.186
28 C -0.078 4.078
29 N -0.220 5.220
30 C -0.064 4.064
31 H 0.082 0.918
32 H 0.077 0.923
33 H 0.074 0.926
34 H 0.134 0.866
35 H 0.126 0.874
36 H 0.245 0.755
37 H 0.077 0.923
38 H 0.075 0.925
39 H 0.096 0.904
40 H 0.042 0.958
41 H 0.060 0.940
42 H 0.053 0.947
43 H 0.048 0.952
44 H 0.097 0.903
45 H 0.072 0.928
46 H 0.105 0.895
47 H 0.054 0.946
48 H 0.165 0.835
49 H 0.179 0.821
50 H 0.193 0.807
51 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges -3.147 -6.551 -19.222 20.550
hybrid contribution 1.403 1.356 1.203 2.293
sum -1.744 -5.195 -18.018 18.833
Atomic orbital electron populations
1.21912 0.93807 1.02291 1.02300 1.19693 0.96508 0.98637 0.89421
0.90428 1.21764 1.04061 1.00514 0.90200 1.21174 0.78496 0.85441
0.85231 1.90643 1.41843 1.26430 1.87136 1.45885 1.57190 1.27771
1.05314 1.21307 0.99197 0.94717 0.83841 1.21739 0.99227 0.83462
0.93483 0.89833 1.20675 0.94712 0.96784 0.85923 1.44213 1.36831
1.19928 1.31307 1.19380 1.01872 1.25385 0.92608 0.91992 1.25466
0.98434 1.02731 0.96676 1.69989 1.36814 1.39709 1.09703 0.85427
0.78756 0.78448 0.78599 1.21478 1.21970 1.20518 1.20487 0.94601
0.85690 0.96652 1.23496 1.01015 0.99278 0.96824 1.22393 0.91278
0.93766 0.93493 1.87511 1.42429 1.17929 1.80556 1.20852 0.99011
0.95696 0.97431 1.21867 0.94564 1.01121 0.93208 1.22452 1.01344
0.95867 0.98941 1.23227 0.93604 0.93117 0.97808 1.67710 1.11136
1.39765 1.03404 1.22803 0.97229 0.91743 0.94637 0.91784 0.92306
0.92574 0.86560 0.87382 0.75511 0.92285 0.92545 0.90434 0.95849
0.94002 0.94741 0.95211 0.90340 0.92821 0.89491 0.94589 0.83506
0.82108 0.80737 0.82061
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.96 8.75 71.98 0.63 -2.33 16
2 C -0.02 -0.44 2.22 -11.54 -0.03 -0.46 16
3 H 0.08 1.66 7.74 -2.38 -0.02 1.64 16
4 C -0.13 -2.38 4.92 29.85 0.15 -2.23 16
5 C 0.51 14.25 7.55 87.65 0.66 14.91 16
6 O -0.58 -20.42 13.96 -3.02 -0.04 -20.46 16
7 N -0.71 -20.87 5.41 -463.07 -2.51 -23.38 16
8 C 0.13 4.85 5.25 86.38 0.45 5.30 16
9 C 0.08 3.17 1.98 28.71 0.06 3.22 16
10 H 0.08 3.78 5.24 -2.39 -0.01 3.77 16
11 C 0.14 6.51 4.71 83.79 0.39 6.91 16
12 N -0.60 -28.61 2.61 -706.05 -1.84 -30.46 16
13 C -0.26 -13.66 9.62 84.03 0.81 -12.85 16
14 H 0.06 3.23 7.88 -2.91 -0.02 3.21 16
15 C -0.04 -1.90 4.93 84.86 0.42 -1.48 16
16 N -0.92 -47.95 9.57 21.65 0.21 -47.74 16
17 Si 0.96 42.87 29.60 68.60 2.03 44.90 16
18 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16
19 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16
20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16
21 C 0.15 6.29 5.32 87.75 0.47 6.75 16
22 C -0.17 -5.73 6.75 32.14 0.22 -5.52 16
23 C 0.07 2.36 6.38 72.73 0.46 2.82 16
24 O -0.37 -13.36 9.44 -137.23 -1.30 -14.65 16
25 C -0.13 -2.19 4.79 -19.77 -0.09 -2.29 16
26 C -0.08 -1.22 9.81 22.47 0.22 -1.00 16
27 C -0.17 -2.11 10.11 22.36 0.23 -1.89 16
28 C 0.08 1.19 11.18 84.69 0.95 2.13 16
29 N -0.51 -10.14 10.36 -195.85 -2.03 -12.17 16
30 C 0.09 1.67 9.95 84.67 0.84 2.51 16
31 H 0.06 1.11 7.42 -2.38 -0.02 1.09 16
32 H 0.06 1.53 5.95 -2.39 -0.01 1.51 16
33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
34 H 0.12 1.72 7.59 -2.38 -0.02 1.70 16
35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16
36 H 0.41 10.50 8.26 -92.70 -0.77 9.73 16
37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16
38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
39 H 0.08 3.92 6.03 -2.39 -0.01 3.91 16
40 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16
41 H 0.25 12.96 8.31 -92.71 -0.77 12.19 16
42 H 0.03 1.37 7.98 -2.39 -0.02 1.35 16
43 H 0.03 1.21 7.96 -2.38 -0.02 1.19 16
44 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16
46 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16
47 H 0.04 1.45 6.66 -2.39 -0.02 1.43 16
48 H 0.15 1.75 8.00 -2.91 -0.02 1.73 16
49 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16
50 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16
51 H 0.16 2.44 7.19 -2.91 -0.02 2.42 16
Total: -1.00 -62.97 399.96 1.52 -61.45
By element:
Atomic # 1 Polarization: 27.83 SS G_CDS: 0.17 Total: 28.00 kcal
Atomic # 6 Polarization: 7.68 SS G_CDS: 6.83 Total: 14.51 kcal
Atomic # 7 Polarization: -107.58 SS G_CDS: -6.17 Total: -113.75 kcal
Atomic # 8 Polarization: -33.77 SS G_CDS: -1.34 Total: -35.11 kcal
Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal
Total: -62.97 1.52 -61.45 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001150402785.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.024 kcal
(2) G-P(sol) polarization free energy of solvation -62.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.945 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.451 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.427 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds