Wall clock time and date at job start Wed Apr 1 2020 04:30:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.47070 * 2 1
4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3
5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1
6 6 O 1.21287 * 119.99375 * 359.97438 * 5 4 2
7 7 N 1.34768 * 120.00550 * 180.02562 * 5 4 2
8 8 C 1.46504 * 119.99870 * 180.02562 * 7 5 4
9 9 C 1.53005 * 109.46606 * 179.97438 * 8 7 5
10 10 C 1.53006 * 109.46945 * 179.97438 * 9 8 7
11 11 N 1.46898 * 109.47289 * 180.02562 * 10 9 8
12 12 C 1.46903 * 110.99820 * 179.97438 * 11 10 9
13 13 C 1.50703 * 109.46923 * 179.97438 * 12 11 10
14 14 O 1.21295 * 119.99558 * 0.02562 * 13 12 11
15 15 N 1.34770 * 119.99997 * 180.02562 * 13 12 11
16 16 C 1.37100 * 120.00226 * 180.02562 * 15 13 12
17 17 H 1.08000 * 119.99580 * 359.97438 * 16 15 13
18 18 C 1.38944 * 120.00166 * 180.02562 * 16 15 13
19 19 N 1.31413 * 120.00097 * 359.97438 * 18 16 15
20 20 Si 1.86801 * 119.99798 * 179.97438 * 18 16 15
21 21 H 1.48499 * 109.47302 * 359.97438 * 20 18 16
22 22 H 1.48507 * 109.47263 * 119.99860 * 20 18 16
23 23 H 1.48498 * 109.47081 * 239.99670 * 20 18 16
24 24 C 1.50701 * 109.47419 * 239.99925 * 2 1 3
25 25 C 1.38236 * 119.99963 * 299.73020 * 24 2 1
26 26 C 1.38236 * 120.00036 * 179.81111 * 25 24 2
27 27 C 1.38226 * 119.99834 * 0.39071 * 26 25 24
28 28 C 1.38237 * 120.00085 * 359.86461 * 27 26 25
29 29 C 1.38229 * 120.00216 * 120.00264 * 24 2 1
30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3
32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3
33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1
34 34 H 1.09008 * 109.47017 * 174.99994 * 4 2 1
35 35 H 0.97005 * 120.00103 * 359.97438 * 7 5 4
36 36 H 1.09000 * 109.47148 * 299.99056 * 8 7 5
37 37 H 1.08998 * 109.47345 * 59.99868 * 8 7 5
38 38 H 1.09000 * 109.47594 * 299.99752 * 9 8 7
39 39 H 1.08998 * 109.47101 * 60.00056 * 9 8 7
40 40 H 1.09000 * 109.46811 * 300.00279 * 10 9 8
41 41 H 1.08995 * 109.46965 * 59.99378 * 10 9 8
42 42 H 1.00899 * 111.00107 * 56.04525 * 11 10 9
43 43 H 1.08997 * 109.47258 * 299.99956 * 12 11 10
44 44 H 1.09001 * 109.46816 * 59.99916 * 12 11 10
45 45 H 0.97001 * 120.00303 * 0.02562 * 15 13 12
46 46 H 0.97001 * 119.99796 * 180.02562 * 19 18 16
47 47 H 1.08010 * 119.99941 * 359.97438 * 25 24 2
48 48 H 1.08001 * 119.99466 * 180.23187 * 26 25 24
49 49 H 1.08005 * 120.00406 * 179.83264 * 27 26 25
50 50 H 1.07998 * 120.00065 * 179.97438 * 28 27 26
51 51 H 1.08002 * 120.00084 * 359.97438 * 29 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7212 1.2493
5 6 1.6413 0.0570 2.4766
6 8 1.0117 1.0874 2.3632
7 7 1.9852 -0.3914 3.7001
8 6 1.5971 0.3650 4.8933
9 6 2.1072 -0.3563 6.1425
10 6 1.7024 0.4340 7.3886
11 7 2.1926 -0.2581 8.5880
12 6 1.8222 0.4739 9.8066
13 6 2.3404 -0.2649 11.0136
14 8 2.9580 -1.2993 10.8724
15 7 2.1176 0.2236 12.2497
16 6 2.5895 -0.4482 13.3477
17 1 3.1394 -1.3692 13.2220
18 6 2.3593 0.0552 14.6221
19 7 1.6898 1.1756 14.7750
20 14 3.0017 -0.8606 16.1181
21 1 3.7171 -2.0856 15.6791
22 1 3.9349 0.0150 16.8716
23 1 1.8632 -1.2395 16.9930
24 6 2.0324 -0.7104 -1.2304
25 6 1.7031 -2.0355 -1.4464
26 6 2.1607 -2.6860 -2.5770
27 6 2.9543 -2.0139 -3.4875
28 6 3.2880 -0.6903 -3.2690
29 6 2.8272 -0.0387 -2.1403
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5139 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 1.6053 -1.7198 1.2952
34 1 3.1263 -0.7995 1.2056
35 1 2.4891 -1.2153 3.7908
36 1 2.0311 1.3638 4.8474
37 1 0.5107 0.4424 4.9370
38 1 1.6729 -1.3550 6.1883
39 1 3.1935 -0.4340 6.0990
40 1 2.1370 1.4325 7.3426
41 1 0.6161 0.5122 7.4322
42 1 3.1905 -0.4001 8.5412
43 1 2.2576 1.4727 9.7770
44 1 0.7367 0.5524 9.8674
45 1 1.6234 1.0506 12.3626
46 1 1.5294 1.5272 15.6647
47 1 1.0861 -2.5618 -0.7330
48 1 1.9003 -3.7202 -2.7475
49 1 3.3141 -2.5228 -4.3696
50 1 3.9083 -0.1652 -3.9802
51 1 3.0878 0.9954 -1.9696
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001175315920.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:30
Heat of formation + Delta-G solvation = -68.751080 kcal
Electronic energy + Delta-G solvation = -27921.841630 eV
Core-core repulsion = 23820.013580 eV
Total energy + Delta-G solvation = -4101.828051 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.47475 -39.48940 -38.33022 -36.69996 -35.46570 -34.79245 -33.85219 -31.67875
-31.32704 -31.16630 -30.17054 -28.40908 -26.87408 -24.86709 -23.97258 -23.15229
-22.86651 -21.74176 -21.03618 -20.06678 -19.22017 -17.90173 -17.68248 -16.89286
-16.58855 -16.20636 -16.03272 -15.68204 -15.53784 -15.23830 -14.76606 -14.49081
-14.47768 -14.22768 -13.97579 -13.86414 -13.63442 -13.51258 -13.40625 -13.13578
-12.94775 -12.73855 -12.23762 -12.01409 -11.86589 -11.80613 -11.73647 -11.59094
-11.47001 -11.43718 -11.23365 -11.09743 -11.05276 -10.95247 -10.34832 -10.23218
-10.02347 -9.52746 -9.33771 -9.33243 -9.11515 -8.48292 -8.08652 -7.96714
-6.42410 -3.83332 0.93520 0.98839 2.35827 2.85345 3.15909 3.26559
3.33784 3.37842 3.90010 4.07385 4.19462 4.28868 4.30468 4.54840
4.58566 4.67356 4.68407 4.74401 4.80127 4.95568 5.03498 5.04929
5.09227 5.11914 5.17406 5.22340 5.25402 5.34529 5.41694 5.48868
5.55923 5.60822 5.61145 5.69193 5.78337 5.78808 5.93791 5.97116
5.99369 6.02502 6.09088 6.11177 6.18986 6.25965 6.26293 6.59247
7.17915 7.18964 7.54791 7.62956 7.94045 8.05856 8.60492 9.17251
9.53666 10.04919 10.75408
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.035446 B = 0.001126 C = 0.001107
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 789.747283 B =24856.330724 C =25289.123195
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.035 4.035
3 H 0.086 0.914
4 C -0.134 4.134
5 C 0.512 3.488
6 O -0.537 6.537
7 N -0.731 5.731
8 C 0.120 3.880
9 C -0.129 4.129
10 C 0.062 3.938
11 N -0.669 5.669
12 C 0.050 3.950
13 C 0.440 3.560
14 O -0.584 6.584
15 N -0.564 5.564
16 C -0.300 4.300
17 H 0.104 0.896
18 C 0.022 3.978
19 N -0.902 5.902
20 Si 0.929 3.071
21 H -0.268 1.268
22 H -0.282 1.282
23 H -0.281 1.281
24 C -0.076 4.076
25 C -0.115 4.115
26 C -0.119 4.119
27 C -0.126 4.126
28 C -0.119 4.119
29 C -0.116 4.116
30 H 0.050 0.950
31 H 0.079 0.921
32 H 0.054 0.946
33 H 0.095 0.905
34 H 0.095 0.905
35 H 0.402 0.598
36 H 0.067 0.933
37 H 0.069 0.931
38 H 0.080 0.920
39 H 0.068 0.932
40 H 0.029 0.971
41 H 0.074 0.926
42 H 0.349 0.651
43 H 0.044 0.956
44 H 0.086 0.914
45 H 0.392 0.608
46 H 0.271 0.729
47 H 0.121 0.879
48 H 0.121 0.879
49 H 0.120 0.880
50 H 0.121 0.879
51 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.149 -2.166 -35.078 35.145
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.054 4.054
3 H 0.105 0.895
4 C -0.174 4.174
5 C 0.299 3.701
6 O -0.415 6.415
7 N -0.383 5.383
8 C -0.004 4.004
9 C -0.167 4.167
10 C -0.068 4.068
11 N -0.302 5.302
12 C -0.082 4.082
13 C 0.226 3.774
14 O -0.468 6.468
15 N -0.200 5.200
16 C -0.429 4.429
17 H 0.121 0.879
18 C -0.179 4.179
19 N -0.543 5.543
20 Si 0.756 3.244
21 H -0.192 1.192
22 H -0.208 1.208
23 H -0.207 1.207
24 C -0.076 4.076
25 C -0.133 4.133
26 C -0.137 4.137
27 C -0.144 4.144
28 C -0.137 4.137
29 C -0.134 4.134
30 H 0.069 0.931
31 H 0.098 0.902
32 H 0.073 0.927
33 H 0.113 0.887
34 H 0.113 0.887
35 H 0.236 0.764
36 H 0.085 0.915
37 H 0.088 0.912
38 H 0.099 0.901
39 H 0.087 0.913
40 H 0.047 0.953
41 H 0.092 0.908
42 H 0.168 0.832
43 H 0.062 0.938
44 H 0.105 0.895
45 H 0.226 0.774
46 H 0.081 0.919
47 H 0.139 0.861
48 H 0.139 0.861
49 H 0.138 0.862
50 H 0.139 0.861
51 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -0.484 -2.436 -35.014 35.102
hybrid contribution 0.853 0.458 0.906 1.326
sum 0.370 -1.978 -34.108 34.167
Atomic orbital electron populations
1.21967 0.93561 1.01778 1.03343 1.19880 0.96841 0.99121 0.89565
0.89528 1.21767 1.03168 1.00255 0.92246 1.20653 0.79145 0.85750
0.84596 1.90688 1.39638 1.24517 1.86616 1.46067 1.58111 1.28062
1.06011 1.21327 1.00489 0.95340 0.83235 1.21745 1.01684 1.00617
0.92684 1.21829 1.00870 0.94781 0.89308 1.60060 1.20910 1.49282
0.99928 1.21674 1.01436 0.95012 0.90109 1.19813 0.85799 0.87681
0.84123 1.90519 1.45198 1.25303 1.85817 1.41870 1.49567 1.24131
1.04447 1.19761 1.32297 1.07277 0.83577 0.87860 1.25261 0.97132
0.96395 0.99126 1.69623 1.40497 1.20065 1.24109 0.85803 0.78454
0.79400 0.80707 1.19203 1.20765 1.20731 1.19905 0.97273 0.94196
0.96200 1.21032 1.00178 0.94339 0.97779 1.21163 0.98004 0.99945
0.94560 1.21164 0.98816 0.94928 0.99506 1.21161 0.99986 0.94973
0.97543 1.21118 0.97863 0.99997 0.94465 0.93074 0.90190 0.92709
0.88670 0.88698 0.76411 0.91475 0.91241 0.90134 0.91287 0.95265
0.90780 0.83207 0.93807 0.89539 0.77439 0.91913 0.86071 0.86104
0.86229 0.86120 0.86035
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.16 8.75 37.16 0.33 -0.83 16
2 C -0.04 -0.25 2.21 -91.77 -0.20 -0.45 16
3 H 0.09 0.71 7.69 -51.93 -0.40 0.31 16
4 C -0.13 -0.82 4.91 -27.89 -0.14 -0.95 16
5 C 0.51 4.54 7.55 -10.99 -0.08 4.46 16
6 O -0.54 -6.73 13.97 5.55 0.08 -6.65 16
7 N -0.73 -5.51 5.56 -60.29 -0.33 -5.84 16
8 C 0.12 1.05 5.67 -4.04 -0.02 1.03 16
9 C -0.13 -1.17 5.59 -26.73 -0.15 -1.32 16
10 C 0.06 0.71 5.69 -3.82 -0.02 0.69 16
11 N -0.67 -10.48 6.13 -115.05 -0.70 -11.19 16
12 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16
13 C 0.44 10.40 7.82 -10.99 -0.09 10.31 16
14 O -0.58 -15.84 15.78 5.54 0.09 -15.76 16
15 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16
16 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16
17 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16
18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
19 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16
20 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16
21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16
22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
24 C -0.08 -0.52 4.78 -104.63 -0.50 -1.02 16
25 C -0.12 -0.73 8.76 -39.58 -0.35 -1.08 16
26 C -0.12 -0.71 10.05 -39.59 -0.40 -1.11 16
27 C -0.13 -0.75 10.05 -39.59 -0.40 -1.15 16
28 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16
29 C -0.12 -0.79 9.67 -39.59 -0.38 -1.17 16
30 H 0.05 0.34 7.40 -51.93 -0.38 -0.04 16
31 H 0.08 0.78 5.95 -51.93 -0.31 0.47 16
32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16
33 H 0.09 0.43 7.56 -51.93 -0.39 0.04 16
34 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16
35 H 0.40 2.06 8.47 -40.82 -0.35 1.72 16
36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16
39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16
41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
42 H 0.35 5.58 8.43 -39.29 -0.33 5.25 16
43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
44 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16
45 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16
46 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16
47 H 0.12 0.61 7.17 -52.48 -0.38 0.23 16
48 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16
49 H 0.12 0.49 8.06 -52.48 -0.42 0.07 16
50 H 0.12 0.53 8.06 -52.49 -0.42 0.10 16
51 H 0.12 0.69 7.95 -52.49 -0.42 0.27 16
LS Contribution 423.10 15.07 6.38 6.38
Total: -1.00 -33.72 423.10 -10.21 -43.93
By element:
Atomic # 1 Polarization: 20.47 SS G_CDS: -8.28 Total: 12.18 kcal
Atomic # 6 Polarization: 2.20 SS G_CDS: -3.07 Total: -0.87 kcal
Atomic # 7 Polarization: -54.81 SS G_CDS: -0.37 Total: -55.19 kcal
Atomic # 8 Polarization: -22.57 SS G_CDS: 0.17 Total: -22.41 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal
Total LS contribution 6.38 Total: 6.38 kcal
Total: -33.72 -10.21 -43.93 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001175315920.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.817 kcal
(2) G-P(sol) polarization free energy of solvation -33.722 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.539 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.751 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds