Wall clock time and date at job start Wed Apr 1 2020 04:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 O 1.21287 * 119.99375 * 359.97438 * 5 4 2 7 7 N 1.34768 * 120.00550 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99870 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.46606 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.46945 * 179.97438 * 9 8 7 11 11 N 1.46898 * 109.47289 * 180.02562 * 10 9 8 12 12 C 1.46903 * 110.99820 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46923 * 179.97438 * 12 11 10 14 14 O 1.21295 * 119.99558 * 0.02562 * 13 12 11 15 15 N 1.34770 * 119.99997 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00226 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99580 * 359.97438 * 16 15 13 18 18 C 1.38944 * 120.00166 * 180.02562 * 16 15 13 19 19 N 1.31413 * 120.00097 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99798 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47302 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47263 * 119.99860 * 20 18 16 23 23 H 1.48498 * 109.47081 * 239.99670 * 20 18 16 24 24 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 25 25 C 1.38236 * 119.99963 * 299.73020 * 24 2 1 26 26 C 1.38236 * 120.00036 * 179.81111 * 25 24 2 27 27 C 1.38226 * 119.99834 * 0.39071 * 26 25 24 28 28 C 1.38237 * 120.00085 * 359.86461 * 27 26 25 29 29 C 1.38229 * 120.00216 * 120.00264 * 24 2 1 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 35 35 H 0.97005 * 120.00103 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.47148 * 299.99056 * 8 7 5 37 37 H 1.08998 * 109.47345 * 59.99868 * 8 7 5 38 38 H 1.09000 * 109.47594 * 299.99752 * 9 8 7 39 39 H 1.08998 * 109.47101 * 60.00056 * 9 8 7 40 40 H 1.09000 * 109.46811 * 300.00279 * 10 9 8 41 41 H 1.08995 * 109.46965 * 59.99378 * 10 9 8 42 42 H 1.00899 * 111.00107 * 56.04525 * 11 10 9 43 43 H 1.08997 * 109.47258 * 299.99956 * 12 11 10 44 44 H 1.09001 * 109.46816 * 59.99916 * 12 11 10 45 45 H 0.97001 * 120.00303 * 0.02562 * 15 13 12 46 46 H 0.97001 * 119.99796 * 180.02562 * 19 18 16 47 47 H 1.08010 * 119.99941 * 359.97438 * 25 24 2 48 48 H 1.08001 * 119.99466 * 180.23187 * 26 25 24 49 49 H 1.08005 * 120.00406 * 179.83264 * 27 26 25 50 50 H 1.07998 * 120.00065 * 179.97438 * 28 27 26 51 51 H 1.08002 * 120.00084 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 8 1.0117 1.0874 2.3632 7 7 1.9852 -0.3914 3.7001 8 6 1.5971 0.3650 4.8933 9 6 2.1072 -0.3563 6.1425 10 6 1.7024 0.4340 7.3886 11 7 2.1926 -0.2581 8.5880 12 6 1.8222 0.4739 9.8066 13 6 2.3404 -0.2649 11.0136 14 8 2.9580 -1.2993 10.8724 15 7 2.1176 0.2236 12.2497 16 6 2.5895 -0.4482 13.3477 17 1 3.1394 -1.3692 13.2220 18 6 2.3593 0.0552 14.6221 19 7 1.6898 1.1756 14.7750 20 14 3.0017 -0.8606 16.1181 21 1 3.7171 -2.0856 15.6791 22 1 3.9349 0.0150 16.8716 23 1 1.8632 -1.2395 16.9930 24 6 2.0324 -0.7104 -1.2304 25 6 1.7031 -2.0355 -1.4464 26 6 2.1607 -2.6860 -2.5770 27 6 2.9543 -2.0139 -3.4875 28 6 3.2880 -0.6903 -3.2690 29 6 2.8272 -0.0387 -2.1403 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2056 35 1 2.4891 -1.2153 3.7908 36 1 2.0311 1.3638 4.8474 37 1 0.5107 0.4424 4.9370 38 1 1.6729 -1.3550 6.1883 39 1 3.1935 -0.4340 6.0990 40 1 2.1370 1.4325 7.3426 41 1 0.6161 0.5122 7.4322 42 1 3.1905 -0.4001 8.5412 43 1 2.2576 1.4727 9.7770 44 1 0.7367 0.5524 9.8674 45 1 1.6234 1.0506 12.3626 46 1 1.5294 1.5272 15.6647 47 1 1.0861 -2.5618 -0.7330 48 1 1.9003 -3.7202 -2.7475 49 1 3.3141 -2.5228 -4.3696 50 1 3.9083 -0.1652 -3.9802 51 1 3.0878 0.9954 -1.9696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175315920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:30 Heat of formation + Delta-G solvation = -68.751080 kcal Electronic energy + Delta-G solvation = -27921.841630 eV Core-core repulsion = 23820.013580 eV Total energy + Delta-G solvation = -4101.828051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.47475 -39.48940 -38.33022 -36.69996 -35.46570 -34.79245 -33.85219 -31.67875 -31.32704 -31.16630 -30.17054 -28.40908 -26.87408 -24.86709 -23.97258 -23.15229 -22.86651 -21.74176 -21.03618 -20.06678 -19.22017 -17.90173 -17.68248 -16.89286 -16.58855 -16.20636 -16.03272 -15.68204 -15.53784 -15.23830 -14.76606 -14.49081 -14.47768 -14.22768 -13.97579 -13.86414 -13.63442 -13.51258 -13.40625 -13.13578 -12.94775 -12.73855 -12.23762 -12.01409 -11.86589 -11.80613 -11.73647 -11.59094 -11.47001 -11.43718 -11.23365 -11.09743 -11.05276 -10.95247 -10.34832 -10.23218 -10.02347 -9.52746 -9.33771 -9.33243 -9.11515 -8.48292 -8.08652 -7.96714 -6.42410 -3.83332 0.93520 0.98839 2.35827 2.85345 3.15909 3.26559 3.33784 3.37842 3.90010 4.07385 4.19462 4.28868 4.30468 4.54840 4.58566 4.67356 4.68407 4.74401 4.80127 4.95568 5.03498 5.04929 5.09227 5.11914 5.17406 5.22340 5.25402 5.34529 5.41694 5.48868 5.55923 5.60822 5.61145 5.69193 5.78337 5.78808 5.93791 5.97116 5.99369 6.02502 6.09088 6.11177 6.18986 6.25965 6.26293 6.59247 7.17915 7.18964 7.54791 7.62956 7.94045 8.05856 8.60492 9.17251 9.53666 10.04919 10.75408 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035446 B = 0.001126 C = 0.001107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.747283 B =24856.330724 C =25289.123195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 H 0.086 0.914 4 C -0.134 4.134 5 C 0.512 3.488 6 O -0.537 6.537 7 N -0.731 5.731 8 C 0.120 3.880 9 C -0.129 4.129 10 C 0.062 3.938 11 N -0.669 5.669 12 C 0.050 3.950 13 C 0.440 3.560 14 O -0.584 6.584 15 N -0.564 5.564 16 C -0.300 4.300 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.076 4.076 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.126 4.126 28 C -0.119 4.119 29 C -0.116 4.116 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.402 0.598 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.349 0.651 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.149 -2.166 -35.078 35.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.054 4.054 3 H 0.105 0.895 4 C -0.174 4.174 5 C 0.299 3.701 6 O -0.415 6.415 7 N -0.383 5.383 8 C -0.004 4.004 9 C -0.167 4.167 10 C -0.068 4.068 11 N -0.302 5.302 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.468 6.468 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.076 4.076 25 C -0.133 4.133 26 C -0.137 4.137 27 C -0.144 4.144 28 C -0.137 4.137 29 C -0.134 4.134 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.236 0.764 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.168 0.832 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.226 0.774 46 H 0.081 0.919 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.484 -2.436 -35.014 35.102 hybrid contribution 0.853 0.458 0.906 1.326 sum 0.370 -1.978 -34.108 34.167 Atomic orbital electron populations 1.21967 0.93561 1.01778 1.03343 1.19880 0.96841 0.99121 0.89565 0.89528 1.21767 1.03168 1.00255 0.92246 1.20653 0.79145 0.85750 0.84596 1.90688 1.39638 1.24517 1.86616 1.46067 1.58111 1.28062 1.06011 1.21327 1.00489 0.95340 0.83235 1.21745 1.01684 1.00617 0.92684 1.21829 1.00870 0.94781 0.89308 1.60060 1.20910 1.49282 0.99928 1.21674 1.01436 0.95012 0.90109 1.19813 0.85799 0.87681 0.84123 1.90519 1.45198 1.25303 1.85817 1.41870 1.49567 1.24131 1.04447 1.19761 1.32297 1.07277 0.83577 0.87860 1.25261 0.97132 0.96395 0.99126 1.69623 1.40497 1.20065 1.24109 0.85803 0.78454 0.79400 0.80707 1.19203 1.20765 1.20731 1.19905 0.97273 0.94196 0.96200 1.21032 1.00178 0.94339 0.97779 1.21163 0.98004 0.99945 0.94560 1.21164 0.98816 0.94928 0.99506 1.21161 0.99986 0.94973 0.97543 1.21118 0.97863 0.99997 0.94465 0.93074 0.90190 0.92709 0.88670 0.88698 0.76411 0.91475 0.91241 0.90134 0.91287 0.95265 0.90780 0.83207 0.93807 0.89539 0.77439 0.91913 0.86071 0.86104 0.86229 0.86120 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.75 37.16 0.33 -0.83 16 2 C -0.04 -0.25 2.21 -91.77 -0.20 -0.45 16 3 H 0.09 0.71 7.69 -51.93 -0.40 0.31 16 4 C -0.13 -0.82 4.91 -27.89 -0.14 -0.95 16 5 C 0.51 4.54 7.55 -10.99 -0.08 4.46 16 6 O -0.54 -6.73 13.97 5.55 0.08 -6.65 16 7 N -0.73 -5.51 5.56 -60.29 -0.33 -5.84 16 8 C 0.12 1.05 5.67 -4.04 -0.02 1.03 16 9 C -0.13 -1.17 5.59 -26.73 -0.15 -1.32 16 10 C 0.06 0.71 5.69 -3.82 -0.02 0.69 16 11 N -0.67 -10.48 6.13 -115.05 -0.70 -11.19 16 12 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 13 C 0.44 10.40 7.82 -10.99 -0.09 10.31 16 14 O -0.58 -15.84 15.78 5.54 0.09 -15.76 16 15 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 16 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 17 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 20 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.08 -0.52 4.78 -104.63 -0.50 -1.02 16 25 C -0.12 -0.73 8.76 -39.58 -0.35 -1.08 16 26 C -0.12 -0.71 10.05 -39.59 -0.40 -1.11 16 27 C -0.13 -0.75 10.05 -39.59 -0.40 -1.15 16 28 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 29 C -0.12 -0.79 9.67 -39.59 -0.38 -1.17 16 30 H 0.05 0.34 7.40 -51.93 -0.38 -0.04 16 31 H 0.08 0.78 5.95 -51.93 -0.31 0.47 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.43 7.56 -51.93 -0.39 0.04 16 34 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.40 2.06 8.47 -40.82 -0.35 1.72 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.35 5.58 8.43 -39.29 -0.33 5.25 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 47 H 0.12 0.61 7.17 -52.48 -0.38 0.23 16 48 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 49 H 0.12 0.49 8.06 -52.48 -0.42 0.07 16 50 H 0.12 0.53 8.06 -52.49 -0.42 0.10 16 51 H 0.12 0.69 7.95 -52.49 -0.42 0.27 16 LS Contribution 423.10 15.07 6.38 6.38 Total: -1.00 -33.72 423.10 -10.21 -43.93 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -8.28 Total: 12.18 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -3.07 Total: -0.87 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.37 Total: -55.19 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.17 Total: -22.41 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -33.72 -10.21 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175315920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.817 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds