Wall clock time and date at job start Wed Apr 1 2020 04:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 O 1.21287 * 119.99375 * 359.97438 * 5 4 2 7 7 N 1.34768 * 120.00550 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99870 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.46606 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.46945 * 179.97438 * 9 8 7 11 11 N 1.46898 * 109.47289 * 180.02562 * 10 9 8 12 12 C 1.46903 * 110.99820 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46923 * 179.97438 * 12 11 10 14 14 O 1.21295 * 119.99558 * 0.02562 * 13 12 11 15 15 N 1.34770 * 119.99997 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00226 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99580 * 359.97438 * 16 15 13 18 18 C 1.38944 * 120.00166 * 180.02562 * 16 15 13 19 19 N 1.31413 * 120.00097 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99798 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47302 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47263 * 119.99860 * 20 18 16 23 23 H 1.48498 * 109.47081 * 239.99670 * 20 18 16 24 24 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 25 25 C 1.38236 * 119.99963 * 299.73020 * 24 2 1 26 26 C 1.38236 * 120.00036 * 179.81111 * 25 24 2 27 27 C 1.38226 * 119.99834 * 0.39071 * 26 25 24 28 28 C 1.38237 * 120.00085 * 359.86461 * 27 26 25 29 29 C 1.38229 * 120.00216 * 120.00264 * 24 2 1 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 35 35 H 0.97005 * 120.00103 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.47148 * 299.99056 * 8 7 5 37 37 H 1.08998 * 109.47345 * 59.99868 * 8 7 5 38 38 H 1.09000 * 109.47594 * 299.99752 * 9 8 7 39 39 H 1.08998 * 109.47101 * 60.00056 * 9 8 7 40 40 H 1.09000 * 109.46811 * 300.00279 * 10 9 8 41 41 H 1.08995 * 109.46965 * 59.99378 * 10 9 8 42 42 H 1.00899 * 111.00107 * 56.04525 * 11 10 9 43 43 H 1.08997 * 109.47258 * 299.99956 * 12 11 10 44 44 H 1.09001 * 109.46816 * 59.99916 * 12 11 10 45 45 H 0.97001 * 120.00303 * 0.02562 * 15 13 12 46 46 H 0.97001 * 119.99796 * 180.02562 * 19 18 16 47 47 H 1.08010 * 119.99941 * 359.97438 * 25 24 2 48 48 H 1.08001 * 119.99466 * 180.23187 * 26 25 24 49 49 H 1.08005 * 120.00406 * 179.83264 * 27 26 25 50 50 H 1.07998 * 120.00065 * 179.97438 * 28 27 26 51 51 H 1.08002 * 120.00084 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 8 1.0117 1.0874 2.3632 7 7 1.9852 -0.3914 3.7001 8 6 1.5971 0.3650 4.8933 9 6 2.1072 -0.3563 6.1425 10 6 1.7024 0.4340 7.3886 11 7 2.1926 -0.2581 8.5880 12 6 1.8222 0.4739 9.8066 13 6 2.3404 -0.2649 11.0136 14 8 2.9580 -1.2993 10.8724 15 7 2.1176 0.2236 12.2497 16 6 2.5895 -0.4482 13.3477 17 1 3.1394 -1.3692 13.2220 18 6 2.3593 0.0552 14.6221 19 7 1.6898 1.1756 14.7750 20 14 3.0017 -0.8606 16.1181 21 1 3.7171 -2.0856 15.6791 22 1 3.9349 0.0150 16.8716 23 1 1.8632 -1.2395 16.9930 24 6 2.0324 -0.7104 -1.2304 25 6 1.7031 -2.0355 -1.4464 26 6 2.1607 -2.6860 -2.5770 27 6 2.9543 -2.0139 -3.4875 28 6 3.2880 -0.6903 -3.2690 29 6 2.8272 -0.0387 -2.1403 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2056 35 1 2.4891 -1.2153 3.7908 36 1 2.0311 1.3638 4.8474 37 1 0.5107 0.4424 4.9370 38 1 1.6729 -1.3550 6.1883 39 1 3.1935 -0.4340 6.0990 40 1 2.1370 1.4325 7.3426 41 1 0.6161 0.5122 7.4322 42 1 3.1905 -0.4001 8.5412 43 1 2.2576 1.4727 9.7770 44 1 0.7367 0.5524 9.8674 45 1 1.6234 1.0506 12.3626 46 1 1.5294 1.5272 15.6647 47 1 1.0861 -2.5618 -0.7330 48 1 1.9003 -3.7202 -2.7475 49 1 3.3141 -2.5228 -4.3696 50 1 3.9083 -0.1652 -3.9802 51 1 3.0878 0.9954 -1.9696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175315920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:29 Heat of formation + Delta-G solvation = -91.850584 kcal Electronic energy + Delta-G solvation = -27922.843300 eV Core-core repulsion = 23820.013580 eV Total energy + Delta-G solvation = -4102.829720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.10127 -40.17008 -40.01181 -37.69846 -36.27259 -35.88825 -35.52230 -33.29699 -32.51410 -31.75749 -30.70137 -29.20625 -28.15151 -26.37955 -24.81731 -24.06655 -23.37168 -22.56952 -21.67223 -21.08152 -20.61623 -19.90034 -18.28177 -17.84771 -17.40591 -17.28231 -16.93755 -16.74185 -16.46764 -16.17194 -15.90758 -15.84818 -15.56654 -15.12807 -15.10771 -14.76742 -14.56525 -14.41062 -14.23844 -14.05059 -13.68767 -13.55518 -13.39680 -13.28732 -13.16392 -12.87048 -12.70503 -12.66900 -12.41594 -12.39921 -12.20664 -12.13036 -12.10588 -11.84647 -11.72497 -11.54759 -11.51351 -10.76420 -10.35426 -10.04790 -10.01769 -9.77756 -9.57834 -9.33703 -8.46966 -5.95882 0.48009 0.54302 1.36955 1.42449 1.56667 1.67919 2.04713 2.19052 2.30444 2.91717 2.96235 3.20547 3.52760 3.64974 3.79062 4.01525 4.03913 4.10759 4.16744 4.20067 4.22586 4.27590 4.34257 4.35662 4.48728 4.52791 4.57482 4.59426 4.65583 4.66539 4.70723 4.71583 4.79798 4.86275 5.02289 5.16324 5.17612 5.19474 5.22817 5.25530 5.36022 5.41141 5.52072 5.63809 5.67983 5.77943 5.88435 6.09710 6.16487 6.41063 6.59085 6.59747 7.12372 7.29957 7.55904 8.10887 8.70694 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035446 B = 0.001126 C = 0.001107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.747283 B =24856.330724 C =25289.123195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.031 4.031 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.509 3.491 6 O -0.579 6.579 7 N -0.722 5.722 8 C 0.127 3.873 9 C -0.115 4.115 10 C 0.062 3.938 11 N -0.683 5.683 12 C 0.064 3.936 13 C 0.437 3.563 14 O -0.623 6.623 15 N -0.573 5.573 16 C -0.335 4.335 17 H 0.079 0.921 18 C -0.012 4.012 19 N -0.921 5.921 20 Si 0.993 3.007 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.083 4.083 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.134 4.134 28 C -0.128 4.128 29 C -0.132 4.132 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.415 0.585 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.345 0.655 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.134 0.866 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.426 -2.905 -35.872 35.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.050 4.050 3 H 0.088 0.912 4 C -0.166 4.166 5 C 0.297 3.703 6 O -0.459 6.459 7 N -0.374 5.374 8 C 0.002 3.998 9 C -0.153 4.153 10 C -0.067 4.067 11 N -0.315 5.315 12 C -0.068 4.068 13 C 0.224 3.776 14 O -0.510 6.510 15 N -0.210 5.210 16 C -0.464 4.464 17 H 0.097 0.903 18 C -0.212 4.212 19 N -0.562 5.562 20 Si 0.817 3.183 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.083 4.083 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.152 4.152 28 C -0.145 4.145 29 C -0.150 4.150 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.252 0.748 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.164 0.836 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.152 0.848 48 H 0.156 0.844 49 H 0.155 0.845 50 H 0.153 0.847 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.209 -3.173 -35.820 35.961 hybrid contribution 0.759 0.694 1.075 1.488 sum 0.550 -2.480 -34.744 34.837 Atomic orbital electron populations 1.21900 0.94203 1.02102 1.01998 1.19778 0.96238 0.98527 0.90443 0.91170 1.21764 1.04185 1.00467 0.90176 1.21143 0.78336 0.85335 0.85488 1.90678 1.41566 1.26427 1.87194 1.45986 1.57724 1.28349 1.05358 1.21154 0.99883 0.95144 0.83570 1.21586 1.02107 1.00039 0.91586 1.21914 1.01077 0.95323 0.88386 1.60062 1.20811 1.50139 1.00534 1.21538 1.02168 0.95059 0.88083 1.20894 0.84299 0.87233 0.85146 1.90485 1.46698 1.27214 1.86592 1.41942 1.50011 1.24307 1.04758 1.19722 1.33942 1.07484 0.85285 0.90273 1.26036 0.96839 0.97057 1.01237 1.69680 1.40601 1.20741 1.25151 0.84872 0.78187 0.78072 0.77214 1.19705 1.19573 1.19642 1.19889 0.97738 0.94583 0.96084 1.21222 1.00322 0.94147 0.98317 1.21448 0.97746 1.00861 0.94360 1.21461 0.98632 0.94963 1.00138 1.21403 1.00135 0.95378 0.97630 1.21297 0.98339 1.00419 0.94958 0.91863 0.92370 0.93128 0.86567 0.87108 0.74790 0.92192 0.92097 0.90263 0.90489 0.94166 0.90370 0.83613 0.91548 0.87858 0.76969 0.91292 0.84815 0.84401 0.84549 0.84733 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.75 71.98 0.63 -1.60 16 2 C -0.03 -0.43 2.21 -11.54 -0.03 -0.45 16 3 H 0.07 1.19 7.69 -2.39 -0.02 1.17 16 4 C -0.13 -1.35 4.91 29.85 0.15 -1.21 16 5 C 0.51 8.63 7.55 87.66 0.66 9.29 16 6 O -0.58 -14.67 13.97 -3.05 -0.04 -14.71 16 7 N -0.72 -9.84 5.56 -463.05 -2.57 -12.41 16 8 C 0.13 2.08 5.67 86.38 0.49 2.57 16 9 C -0.12 -1.89 5.59 30.60 0.17 -1.71 16 10 C 0.06 1.31 5.69 86.31 0.49 1.80 16 11 N -0.68 -20.48 6.13 -517.92 -3.17 -23.65 16 12 C 0.06 2.15 6.17 85.56 0.53 2.68 16 13 C 0.44 20.70 7.82 87.66 0.69 21.39 16 14 O -0.62 -34.38 15.78 -3.08 -0.05 -34.42 16 15 N -0.57 -29.39 5.29 -306.99 -1.62 -31.01 16 16 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 17 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 18 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 19 N -0.92 -49.65 13.05 21.66 0.28 -49.36 16 20 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 C -0.08 -1.06 4.78 -19.87 -0.09 -1.16 16 25 C -0.12 -1.35 8.76 22.27 0.20 -1.15 16 26 C -0.13 -1.29 10.05 22.27 0.22 -1.06 16 27 C -0.13 -1.38 10.05 22.27 0.22 -1.16 16 28 C -0.13 -1.44 10.05 22.27 0.22 -1.21 16 29 C -0.13 -1.72 9.67 22.27 0.22 -1.50 16 30 H 0.06 0.79 7.40 -2.39 -0.02 0.77 16 31 H 0.06 1.17 5.95 -2.39 -0.01 1.16 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.12 0.77 7.56 -2.39 -0.02 0.76 16 34 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.42 3.38 8.47 -92.70 -0.79 2.59 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.35 10.73 8.43 -89.70 -0.76 9.97 16 43 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 46 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 47 H 0.13 1.05 7.17 -2.91 -0.02 1.03 16 48 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 49 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 50 H 0.13 1.02 8.06 -2.91 -0.02 1.00 16 51 H 0.12 1.42 7.95 -2.91 -0.02 1.40 16 Total: -1.00 -73.52 423.10 -0.43 -73.94 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: -1.32 Total: 39.72 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 6.04 Total: 7.12 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -7.09 Total: -116.44 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.09 Total: -49.14 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.52 -0.43 -73.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175315920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.908 kcal (2) G-P(sol) polarization free energy of solvation -73.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds