Wall clock time and date at job start Wed Apr 1 2020 04:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35913 * 116.99800 * 2 1 4 4 C 1.39142 * 120.46966 * 179.97438 * 3 2 1 5 5 C 1.38535 * 118.37143 * 179.97438 * 4 3 2 6 6 C 1.38259 * 119.22088 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.55024 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.46902 * 125.00318 * 7 6 5 9 9 O 1.21285 * 119.99786 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00040 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00196 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46813 * 325.00539 * 11 10 8 13 13 C 1.53001 * 109.46936 * 84.99822 * 11 10 8 14 14 C 1.52990 * 109.47433 * 204.99771 * 11 10 8 15 15 H 1.09006 * 109.52401 * 60.07898 * 14 11 10 16 16 C 1.53040 * 109.50055 * 180.16153 * 14 11 10 17 17 C 1.53039 * 109.54198 * 181.31572 * 16 14 11 18 18 C 1.53622 * 109.24473 * 298.51455 * 17 16 14 19 19 N 1.46924 * 108.54399 * 54.84806 * 18 17 16 20 20 C 1.36946 * 120.62919 * 126.37114 * 19 18 17 21 21 H 1.08001 * 119.99879 * 207.53220 * 20 19 18 22 22 C 1.38814 * 119.99719 * 27.52961 * 20 19 18 23 23 N 1.31620 * 119.99709 * 25.84717 * 22 20 19 24 24 Si 1.86797 * 119.99712 * 205.56717 * 22 20 19 25 25 H 1.48493 * 109.47196 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47268 * 299.99796 * 24 22 20 28 28 C 1.46928 * 118.74378 * 306.10142 * 19 18 17 29 29 N 1.31837 * 120.88647 * 0.25431 * 6 5 4 30 30 C 1.31842 * 121.77881 * 359.47112 * 29 6 5 31 31 H 1.08994 * 109.46796 * 59.99715 * 1 2 3 32 32 H 1.08999 * 109.47021 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46637 * 299.99888 * 1 2 3 34 34 H 1.08001 * 120.81375 * 0.02562 * 4 3 2 35 35 H 1.08003 * 120.38838 * 180.02562 * 5 4 3 36 36 H 1.08990 * 109.47767 * 4.99902 * 7 6 5 37 37 H 1.09001 * 109.46829 * 244.99397 * 7 6 5 38 38 H 0.97000 * 120.00150 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.47319 * 180.02562 * 13 11 10 40 40 H 1.09002 * 109.46944 * 300.00092 * 13 11 10 41 41 H 1.08999 * 109.47527 * 60.00142 * 13 11 10 42 42 H 1.08999 * 109.46221 * 301.33947 * 16 14 11 43 43 H 1.09003 * 109.45556 * 61.29650 * 16 14 11 44 44 H 1.09004 * 109.49499 * 58.58593 * 17 16 14 45 45 H 1.08994 * 109.49949 * 178.64805 * 17 16 14 46 46 H 1.09007 * 109.73672 * 295.11836 * 18 17 16 47 47 H 1.08997 * 109.67035 * 174.54572 * 18 17 16 48 48 H 0.96992 * 120.00366 * 4.05609 * 23 22 20 49 49 H 1.08992 * 109.58848 * 173.64203 * 28 19 18 50 50 H 1.08997 * 109.58525 * 294.06878 * 28 19 18 51 51 H 1.08008 * 119.65802 * 180.27343 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4349 1.2953 0.0005 5 6 4.0182 2.5518 0.0000 6 6 3.2079 3.6721 -0.0006 7 6 3.8345 5.0426 -0.0006 8 6 3.3025 5.8381 -1.1649 9 8 2.4945 5.3409 -1.9204 10 7 3.7247 7.1021 -1.3664 11 6 3.2080 7.8752 -2.4985 12 1 3.0435 7.2111 -3.3470 13 6 1.8855 8.5356 -2.1038 14 6 4.2217 8.9542 -2.8842 15 1 5.1639 8.4846 -3.1669 16 6 3.6808 9.7649 -4.0643 17 6 4.7082 10.8233 -4.4720 18 6 4.9425 11.7817 -3.2945 19 7 5.3262 10.9905 -2.1174 20 6 6.4729 11.2790 -1.4265 21 1 6.9868 10.4994 -0.8837 22 6 6.9745 12.5733 -1.4238 23 7 6.1649 13.5933 -1.6147 24 14 8.7974 12.8678 -1.1415 25 1 9.5795 12.1822 -2.2013 26 1 9.0758 14.3258 -1.1851 27 1 9.1859 12.3297 0.1870 28 6 4.4533 9.8879 -1.6920 29 7 1.8945 3.5574 0.0045 30 6 1.3003 2.3804 -0.0001 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 4.0433 0.4029 0.0005 35 1 5.0933 2.6552 -0.0001 36 1 4.9166 4.9475 -0.0897 37 1 3.5901 5.5539 0.9306 38 1 4.3706 7.4999 -0.7619 39 1 1.5008 9.1105 -2.9462 40 1 1.1633 7.7668 -1.8290 41 1 2.0499 9.1996 -1.2552 42 1 3.4918 9.0989 -4.9062 43 1 2.7513 10.2542 -3.7729 44 1 5.6458 10.3360 -4.7398 45 1 4.3325 11.3843 -5.3276 46 1 4.0269 12.3334 -3.0811 47 1 5.7425 12.4791 -3.5426 48 1 5.2099 13.4454 -1.6984 49 1 4.9305 9.3355 -0.8826 50 1 3.4987 10.2884 -1.3506 51 1 0.2216 2.3263 -0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265705411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:03 Heat of formation + Delta-G solvation = -25.465152 kcal Electronic energy + Delta-G solvation = -30489.720772 eV Core-core repulsion = 26389.769740 eV Total energy + Delta-G solvation = -4099.951032 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.01329 -39.83045 -38.59243 -37.89457 -35.29536 -33.21685 -32.67374 -32.64199 -30.94015 -30.39937 -28.54265 -28.04614 -27.34071 -25.12460 -24.12246 -23.58816 -22.62729 -22.14967 -20.63744 -20.07064 -18.66899 -18.48708 -17.58555 -17.36522 -16.77633 -16.45318 -16.20014 -15.55244 -15.20877 -14.67041 -14.53082 -14.47686 -14.35697 -14.09012 -13.79329 -13.60152 -13.35705 -13.30665 -13.22983 -12.83186 -12.68046 -12.42706 -12.27147 -12.23715 -12.08788 -11.93049 -11.67591 -11.56456 -11.02553 -10.83501 -10.56268 -10.34662 -10.19822 -10.05757 -10.00652 -9.93375 -9.83388 -9.71454 -9.51419 -9.26370 -8.86011 -8.62300 -8.36071 -6.87077 -6.10292 -3.23563 0.83823 1.04032 2.78231 2.80669 3.21458 3.47326 3.51288 3.63191 3.69043 4.04953 4.35118 4.40304 4.56430 4.59459 4.73018 4.75677 4.90771 4.98840 5.05220 5.10287 5.17635 5.20034 5.24176 5.34495 5.37191 5.39891 5.49633 5.63366 5.64555 5.68051 5.80358 5.80562 5.94933 6.08344 6.15204 6.16886 6.19825 6.28335 6.41214 6.48579 6.53458 6.63662 6.72255 6.74180 6.84269 6.85794 7.10655 7.20841 7.66759 7.79922 7.97748 8.38972 8.56122 9.10430 9.83544 10.29100 11.19854 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.002025 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.390582 B =13823.654509 C =14777.234491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.070 3.930 4 C -0.109 4.109 5 C -0.125 4.125 6 C 0.110 3.890 7 C -0.091 4.091 8 C 0.518 3.482 9 O -0.530 6.530 10 N -0.724 5.724 11 C 0.152 3.848 12 H 0.080 0.920 13 C -0.164 4.164 14 C -0.112 4.112 15 H 0.072 0.928 16 C -0.101 4.101 17 C -0.137 4.137 18 C 0.150 3.850 19 N -0.598 5.598 20 C -0.352 4.352 21 H 0.055 0.945 22 C -0.024 4.024 23 N -0.914 5.914 24 Si 1.064 2.936 25 H -0.294 1.294 26 H -0.286 1.286 27 H -0.293 1.293 28 C 0.154 3.846 29 N -0.420 5.420 30 C 0.026 3.974 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.402 0.598 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.016 0.984 47 H 0.077 0.923 48 H 0.269 0.731 49 H 0.049 0.951 50 H 0.023 0.977 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.473 -23.284 2.834 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.022 3.978 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.029 4.029 7 C -0.131 4.131 8 C 0.304 3.696 9 O -0.406 6.406 10 N -0.376 5.376 11 C 0.048 3.952 12 H 0.098 0.902 13 C -0.222 4.222 14 C -0.133 4.133 15 H 0.090 0.910 16 C -0.139 4.139 17 C -0.176 4.176 18 C 0.024 3.976 19 N -0.322 5.322 20 C -0.481 4.481 21 H 0.073 0.927 22 C -0.226 4.226 23 N -0.554 5.554 24 Si 0.894 3.106 25 H -0.221 1.221 26 H -0.211 1.211 27 H -0.220 1.220 28 C 0.028 3.972 29 N -0.129 5.129 30 C -0.133 4.133 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.237 0.763 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.034 0.966 47 H 0.096 0.904 48 H 0.080 0.920 49 H 0.067 0.933 50 H 0.040 0.960 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.287 -21.906 2.389 23.542 hybrid contribution -0.644 -1.726 0.226 1.856 sum -8.931 -23.632 2.615 25.398 Atomic orbital electron populations 1.23123 0.77964 1.04290 1.01742 1.86060 1.21701 1.26169 1.88693 1.20097 0.93318 0.85739 0.98601 1.20858 0.91651 0.98734 1.02276 1.21817 1.01359 0.91626 0.99726 1.20456 0.89242 0.94312 0.98894 1.20569 1.01252 0.91824 0.99481 1.20218 0.81648 0.81748 0.86033 1.90705 1.32983 1.70125 1.46757 1.46187 1.46550 1.13737 1.31161 1.20947 0.93562 0.92239 0.88485 0.90224 1.22250 0.96961 1.00715 1.02302 1.21929 0.97550 0.95383 0.98422 0.90984 1.21434 0.98751 0.97305 0.96457 1.22132 0.98435 0.98028 0.99024 1.21043 0.98457 0.92728 0.85380 1.44095 1.24369 1.35262 1.28432 1.19926 1.01096 0.95110 1.31933 0.92742 1.25832 1.06164 0.91334 0.99304 1.70787 1.05258 1.31518 1.47832 0.83530 0.75243 0.75844 0.75980 1.22093 1.21127 1.22007 1.20953 0.93696 0.89507 0.93066 1.67289 1.11480 1.26239 1.07849 1.22868 1.00463 0.86955 1.03063 0.92284 0.87932 0.92368 0.83998 0.83924 0.87251 0.87062 0.76292 0.91619 0.92730 0.91843 0.93304 0.92178 0.92441 0.93073 0.96585 0.90425 0.91995 0.93253 0.95960 0.82681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.12 16 2 O -0.31 -2.85 10.51 -19.47 -0.20 -3.06 16 3 C 0.07 0.72 6.71 -39.08 -0.26 0.46 16 4 C -0.11 -1.02 10.13 -39.14 -0.40 -1.42 16 5 C -0.13 -1.18 9.70 -39.46 -0.38 -1.56 16 6 C 0.11 1.29 5.76 -82.58 -0.48 0.81 16 7 C -0.09 -0.92 6.10 -29.03 -0.18 -1.10 16 8 C 0.52 7.17 7.73 -10.98 -0.08 7.08 16 9 O -0.53 -9.35 15.01 5.55 0.08 -9.26 16 10 N -0.72 -9.61 5.00 -53.81 -0.27 -9.88 16 11 C 0.15 2.24 2.41 -67.93 -0.16 2.07 16 12 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 13 C -0.16 -2.36 8.78 37.16 0.33 -2.03 16 14 C -0.11 -1.84 2.33 -90.50 -0.21 -2.05 16 15 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.10 -1.65 4.77 -26.69 -0.13 -1.78 16 17 C -0.14 -2.54 6.10 -26.39 -0.16 -2.70 16 18 C 0.15 3.42 4.72 -3.49 -0.02 3.41 16 19 N -0.60 -14.35 2.85 -172.05 -0.49 -14.84 16 20 C -0.35 -9.47 9.49 -15.05 -0.14 -9.61 16 21 H 0.05 1.46 7.95 -52.49 -0.42 1.04 16 22 C -0.02 -0.67 4.66 -17.43 -0.08 -0.75 16 23 N -0.91 -26.91 12.46 55.49 0.69 -26.22 16 24 Si 1.06 24.72 29.99 -169.99 -5.10 19.62 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 28 C 0.15 3.00 5.29 -3.71 -0.02 2.98 16 29 N -0.42 -5.65 9.23 -9.35 -0.09 -5.74 16 30 C 0.03 0.29 10.22 -17.38 -0.18 0.11 16 31 H 0.06 0.30 7.68 -51.93 -0.40 -0.10 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.26 7.68 -51.93 -0.40 -0.14 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.14 0.91 7.95 -52.48 -0.42 0.49 16 36 H 0.11 0.79 7.87 -51.93 -0.41 0.38 16 37 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.40 4.82 6.97 -40.82 -0.28 4.53 16 39 H 0.06 0.90 6.46 -51.93 -0.34 0.56 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.93 6.32 -51.93 -0.33 0.60 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.96 6.50 -51.93 -0.34 0.62 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 47 H 0.08 2.01 6.31 -51.93 -0.33 1.68 16 48 H 0.27 7.99 6.69 -40.82 -0.27 7.71 16 49 H 0.05 0.93 6.52 -51.93 -0.34 0.59 16 50 H 0.02 0.45 6.18 -51.93 -0.32 0.13 16 51 H 0.16 1.38 6.32 -52.48 -0.33 1.05 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -34.51 398.96 -8.82 -43.33 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.90 Total: 4.98 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.56 Total: -4.95 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.15 Total: -56.68 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.12 Total: -12.32 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.10 Total: 19.62 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.51 -8.82 -43.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265705411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.866 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds