Wall clock time and date at job start Wed Apr 1 2020 04:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35913 * 116.99800 * 2 1 4 4 C 1.39142 * 120.46966 * 179.97438 * 3 2 1 5 5 C 1.38535 * 118.37143 * 179.97438 * 4 3 2 6 6 C 1.38259 * 119.22088 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.55024 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.46902 * 125.00318 * 7 6 5 9 9 O 1.21285 * 119.99786 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00040 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00196 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46813 * 325.00539 * 11 10 8 13 13 C 1.53001 * 109.46936 * 84.99822 * 11 10 8 14 14 C 1.52990 * 109.47433 * 204.99771 * 11 10 8 15 15 H 1.09006 * 109.52401 * 60.07898 * 14 11 10 16 16 C 1.53040 * 109.50055 * 180.16153 * 14 11 10 17 17 C 1.53039 * 109.54198 * 181.31572 * 16 14 11 18 18 C 1.53622 * 109.24473 * 298.51455 * 17 16 14 19 19 N 1.46924 * 108.54399 * 54.84806 * 18 17 16 20 20 C 1.36946 * 120.62919 * 126.37114 * 19 18 17 21 21 H 1.08001 * 119.99879 * 207.53220 * 20 19 18 22 22 C 1.38814 * 119.99719 * 27.52961 * 20 19 18 23 23 N 1.31620 * 119.99709 * 25.84717 * 22 20 19 24 24 Si 1.86797 * 119.99712 * 205.56717 * 22 20 19 25 25 H 1.48493 * 109.47196 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47268 * 299.99796 * 24 22 20 28 28 C 1.46928 * 118.74378 * 306.10142 * 19 18 17 29 29 N 1.31837 * 120.88647 * 0.25431 * 6 5 4 30 30 C 1.31842 * 121.77881 * 359.47112 * 29 6 5 31 31 H 1.08994 * 109.46796 * 59.99715 * 1 2 3 32 32 H 1.08999 * 109.47021 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46637 * 299.99888 * 1 2 3 34 34 H 1.08001 * 120.81375 * 0.02562 * 4 3 2 35 35 H 1.08003 * 120.38838 * 180.02562 * 5 4 3 36 36 H 1.08990 * 109.47767 * 4.99902 * 7 6 5 37 37 H 1.09001 * 109.46829 * 244.99397 * 7 6 5 38 38 H 0.97000 * 120.00150 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.47319 * 180.02562 * 13 11 10 40 40 H 1.09002 * 109.46944 * 300.00092 * 13 11 10 41 41 H 1.08999 * 109.47527 * 60.00142 * 13 11 10 42 42 H 1.08999 * 109.46221 * 301.33947 * 16 14 11 43 43 H 1.09003 * 109.45556 * 61.29650 * 16 14 11 44 44 H 1.09004 * 109.49499 * 58.58593 * 17 16 14 45 45 H 1.08994 * 109.49949 * 178.64805 * 17 16 14 46 46 H 1.09007 * 109.73672 * 295.11836 * 18 17 16 47 47 H 1.08997 * 109.67035 * 174.54572 * 18 17 16 48 48 H 0.96992 * 120.00366 * 4.05609 * 23 22 20 49 49 H 1.08992 * 109.58848 * 173.64203 * 28 19 18 50 50 H 1.08997 * 109.58525 * 294.06878 * 28 19 18 51 51 H 1.08008 * 119.65802 * 180.27343 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4349 1.2953 0.0005 5 6 4.0182 2.5518 0.0000 6 6 3.2079 3.6721 -0.0006 7 6 3.8345 5.0426 -0.0006 8 6 3.3025 5.8381 -1.1649 9 8 2.4945 5.3409 -1.9204 10 7 3.7247 7.1021 -1.3664 11 6 3.2080 7.8752 -2.4985 12 1 3.0435 7.2111 -3.3470 13 6 1.8855 8.5356 -2.1038 14 6 4.2217 8.9542 -2.8842 15 1 5.1639 8.4846 -3.1669 16 6 3.6808 9.7649 -4.0643 17 6 4.7082 10.8233 -4.4720 18 6 4.9425 11.7817 -3.2945 19 7 5.3262 10.9905 -2.1174 20 6 6.4729 11.2790 -1.4265 21 1 6.9868 10.4994 -0.8837 22 6 6.9745 12.5733 -1.4238 23 7 6.1649 13.5933 -1.6147 24 14 8.7974 12.8678 -1.1415 25 1 9.5795 12.1822 -2.2013 26 1 9.0758 14.3258 -1.1851 27 1 9.1859 12.3297 0.1870 28 6 4.4533 9.8879 -1.6920 29 7 1.8945 3.5574 0.0045 30 6 1.3003 2.3804 -0.0001 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 4.0433 0.4029 0.0005 35 1 5.0933 2.6552 -0.0001 36 1 4.9166 4.9475 -0.0897 37 1 3.5901 5.5539 0.9306 38 1 4.3706 7.4999 -0.7619 39 1 1.5008 9.1105 -2.9462 40 1 1.1633 7.7668 -1.8290 41 1 2.0499 9.1996 -1.2552 42 1 3.4918 9.0989 -4.9062 43 1 2.7513 10.2542 -3.7729 44 1 5.6458 10.3360 -4.7398 45 1 4.3325 11.3843 -5.3276 46 1 4.0269 12.3334 -3.0811 47 1 5.7425 12.4791 -3.5426 48 1 5.2099 13.4454 -1.6984 49 1 4.9305 9.3355 -0.8826 50 1 3.4987 10.2884 -1.3506 51 1 0.2216 2.3263 -0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265705411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:02 Heat of formation + Delta-G solvation = -47.952152 kcal Electronic energy + Delta-G solvation = -30490.695881 eV Core-core repulsion = 26389.769740 eV Total energy + Delta-G solvation = -4100.926141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.77401 -40.94371 -39.68461 -38.95933 -36.80601 -34.77941 -33.57395 -33.39672 -32.26384 -32.18302 -29.67368 -28.95744 -28.04397 -27.02780 -25.36618 -24.41072 -23.98827 -23.32817 -22.08549 -21.20825 -20.15132 -19.33748 -19.14307 -18.31483 -17.79056 -17.40203 -16.81859 -16.57915 -16.30054 -16.11822 -16.04171 -15.52066 -15.42167 -15.17993 -15.11317 -15.05725 -14.85988 -14.36911 -14.15004 -14.03761 -13.85801 -13.69353 -13.55545 -13.11640 -12.97061 -12.89560 -12.76766 -12.72816 -12.58735 -12.31725 -12.08576 -11.90386 -11.85381 -11.71188 -11.59526 -11.36992 -11.06517 -10.86210 -10.65808 -10.39355 -10.34614 -10.02239 -9.36084 -8.85925 -8.22269 -5.34274 0.10059 0.30225 1.60589 1.68029 1.74722 1.86212 2.19922 2.24821 2.68368 2.81877 3.25064 3.31343 3.49945 3.65100 3.72061 3.84391 3.90960 3.92455 4.00125 4.08604 4.24398 4.30142 4.33872 4.35909 4.38963 4.40361 4.52585 4.55543 4.57202 4.60901 4.67111 4.72965 4.75613 4.79993 4.90565 4.94355 4.98083 5.06629 5.10147 5.13869 5.17440 5.25238 5.31015 5.38337 5.51290 5.56631 5.61033 5.88576 6.19931 6.43018 6.62255 7.03054 7.10306 7.34138 7.82528 8.28409 9.04478 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.002025 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.390582 B =13823.654509 C =14777.234491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.066 3.934 4 C -0.116 4.116 5 C -0.120 4.120 6 C 0.085 3.915 7 C -0.085 4.085 8 C 0.517 3.483 9 O -0.571 6.571 10 N -0.720 5.720 11 C 0.162 3.838 12 H 0.074 0.926 13 C -0.157 4.157 14 C -0.095 4.095 15 H 0.065 0.935 16 C -0.099 4.099 17 C -0.126 4.126 18 C 0.154 3.846 19 N -0.616 5.616 20 C -0.352 4.352 21 H 0.055 0.945 22 C -0.078 4.078 23 N -0.944 5.944 24 Si 1.113 2.887 25 H -0.281 1.281 26 H -0.296 1.296 27 H -0.274 1.274 28 C 0.154 3.846 29 N -0.457 5.457 30 C 0.006 3.994 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.165 0.835 35 H 0.176 0.824 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.409 0.591 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.003 0.997 47 H 0.040 0.960 48 H 0.254 0.746 49 H 0.055 0.945 50 H 0.020 0.980 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 -25.472 2.958 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.018 3.982 4 C -0.142 4.142 5 C -0.139 4.139 6 C -0.054 4.054 7 C -0.125 4.125 8 C 0.304 3.696 9 O -0.450 6.450 10 N -0.372 5.372 11 C 0.057 3.943 12 H 0.093 0.907 13 C -0.215 4.215 14 C -0.116 4.116 15 H 0.083 0.917 16 C -0.137 4.137 17 C -0.165 4.165 18 C 0.028 3.972 19 N -0.340 5.340 20 C -0.482 4.482 21 H 0.073 0.927 22 C -0.275 4.275 23 N -0.586 5.586 24 Si 0.938 3.062 25 H -0.208 1.208 26 H -0.223 1.223 27 H -0.199 1.199 28 C 0.028 3.972 29 N -0.167 5.167 30 C -0.152 4.152 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.084 0.916 34 H 0.182 0.818 35 H 0.193 0.807 36 H 0.162 0.838 37 H 0.143 0.857 38 H 0.246 0.754 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.021 0.979 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.038 0.962 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.492 -24.132 2.527 25.395 hybrid contribution -0.984 -1.122 0.199 1.506 sum -8.477 -25.254 2.726 26.778 Atomic orbital electron populations 1.23392 0.76274 1.06001 1.02227 1.86049 1.23525 1.25638 1.88474 1.20247 0.93943 0.85841 0.98125 1.21249 0.91631 0.99749 1.01610 1.22156 1.02802 0.90821 0.98116 1.20806 0.89172 0.95593 0.99837 1.20658 1.02954 0.90752 0.98143 1.20848 0.80801 0.81574 0.86381 1.90688 1.34849 1.70914 1.48501 1.46150 1.46551 1.13756 1.30788 1.20733 0.93040 0.91562 0.88990 0.90743 1.22179 0.96614 1.00341 1.02379 1.21700 0.97782 0.94972 0.97105 0.91671 1.21438 0.98014 0.97009 0.97248 1.21995 0.99068 0.97772 0.97697 1.20915 0.96382 0.93053 0.86869 1.44344 1.24646 1.36176 1.28878 1.20212 1.01910 0.94929 1.31123 0.92694 1.27127 1.09300 0.91519 0.99514 1.70907 1.04550 1.32317 1.50847 0.82873 0.71070 0.75185 0.77091 1.20765 1.22253 1.19933 1.21077 0.92739 0.88720 0.94621 1.67240 1.12832 1.27447 1.09158 1.23078 1.01238 0.87045 1.03839 0.92157 0.85629 0.91559 0.81777 0.80694 0.83816 0.85666 0.75425 0.90815 0.93458 0.92370 0.90667 0.91707 0.93065 0.90964 0.97861 0.94096 0.93652 0.92682 0.96189 0.81693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 113.37 1.11 1.26 16 2 O -0.32 -5.54 10.51 -92.57 -0.97 -6.51 16 3 C 0.07 1.30 6.71 22.60 0.15 1.45 16 4 C -0.12 -1.97 10.13 22.56 0.23 -1.74 16 5 C -0.12 -1.97 9.70 22.35 0.22 -1.75 16 6 C 0.08 1.87 5.76 42.56 0.24 2.12 16 7 C -0.09 -1.55 6.10 29.10 0.18 -1.38 16 8 C 0.52 13.60 7.73 87.66 0.68 14.28 16 9 O -0.57 -19.87 15.01 -3.05 -0.05 -19.91 16 10 N -0.72 -17.97 5.00 -442.54 -2.21 -20.18 16 11 C 0.16 4.51 2.41 44.99 0.11 4.62 16 12 H 0.07 2.23 7.58 -2.39 -0.02 2.21 16 13 C -0.16 -4.32 8.78 71.98 0.63 -3.69 16 14 C -0.09 -2.97 2.33 -10.72 -0.02 -2.99 16 15 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 16 C -0.10 -3.02 4.77 30.62 0.15 -2.87 16 17 C -0.13 -4.52 6.10 30.82 0.19 -4.34 16 18 C 0.15 7.11 4.72 86.51 0.41 7.52 16 19 N -0.62 -29.62 2.85 -698.25 -1.99 -31.60 16 20 C -0.35 -18.97 9.49 84.03 0.80 -18.17 16 21 H 0.06 2.91 7.95 -2.91 -0.02 2.88 16 22 C -0.08 -4.37 4.66 84.86 0.40 -3.98 16 23 N -0.94 -57.00 12.46 21.65 0.27 -56.73 16 24 Si 1.11 49.93 29.99 68.60 2.06 51.98 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 C 0.15 5.85 5.29 86.36 0.46 6.30 16 29 N -0.46 -12.22 9.23 -183.49 -1.69 -13.91 16 30 C 0.01 0.14 10.22 84.80 0.87 1.01 16 31 H 0.06 0.57 7.68 -2.39 -0.02 0.55 16 32 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.54 7.68 -2.38 -0.02 0.52 16 34 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.18 1.57 7.95 -2.91 -0.02 1.55 16 36 H 0.14 1.56 7.87 -2.39 -0.02 1.54 16 37 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.41 9.02 6.97 -92.71 -0.65 8.38 16 39 H 0.07 1.89 6.46 -2.39 -0.02 1.88 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.65 6.32 -2.39 -0.02 1.64 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 1.94 6.50 -2.39 -0.02 1.92 16 44 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.00 0.16 7.87 -2.38 -0.02 0.15 16 47 H 0.04 2.17 6.31 -2.39 -0.02 2.16 16 48 H 0.25 15.62 6.69 -92.71 -0.62 15.00 16 49 H 0.05 2.00 6.52 -2.39 -0.02 1.98 16 50 H 0.02 0.79 6.18 -2.39 -0.01 0.77 16 51 H 0.17 3.00 6.32 -2.91 -0.02 2.98 16 Total: -1.00 -76.64 398.96 2.65 -73.99 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.45 Total: 25.22 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 6.78 Total: -2.34 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -5.62 Total: -122.43 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.02 Total: -26.43 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.06 Total: 51.98 kcal Total: -76.64 2.65 -73.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265705411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.038 kcal (2) G-P(sol) polarization free energy of solvation -76.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds