Wall clock time and date at job start Wed Apr 1 2020 04:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35909 * 116.99837 * 2 1 4 4 C 1.39140 * 120.47201 * 180.02562 * 3 2 1 5 5 C 1.38540 * 118.37240 * 180.02562 * 4 3 2 6 6 C 1.38248 * 119.22198 * 0.24242 * 5 4 3 7 7 C 1.50707 * 119.55722 * 179.74998 * 6 5 4 8 8 C 1.50705 * 109.46899 * 125.00301 * 7 6 5 9 9 O 1.21277 * 120.00164 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99524 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99717 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47314 * 325.00087 * 11 10 8 13 13 C 1.52992 * 109.47297 * 85.00039 * 11 10 8 14 14 C 1.52997 * 109.47417 * 205.00151 * 11 10 8 15 15 H 1.08997 * 109.49544 * 300.06815 * 14 11 10 16 16 C 1.53037 * 109.50397 * 180.02562 * 14 11 10 17 17 C 1.53042 * 109.54330 * 178.68444 * 16 14 11 18 18 C 1.53190 * 109.31232 * 61.36039 * 17 16 14 19 19 N 1.46921 * 108.77833 * 305.37066 * 18 17 16 20 20 C 1.36935 * 120.63233 * 233.60518 * 19 18 17 21 21 H 1.08002 * 120.00585 * 152.62353 * 20 19 18 22 22 C 1.38816 * 119.99967 * 332.62978 * 20 19 18 23 23 N 1.31618 * 120.00219 * 159.34204 * 22 20 19 24 24 Si 1.86800 * 119.99750 * 339.34120 * 22 20 19 25 25 H 1.48499 * 109.47503 * 92.95462 * 24 22 20 26 26 H 1.48502 * 109.46940 * 212.95251 * 24 22 20 27 27 H 1.48503 * 109.46941 * 332.95056 * 24 22 20 28 28 C 1.46928 * 118.74024 * 53.60531 * 19 18 17 29 29 N 1.31848 * 120.88918 * 359.48445 * 6 5 4 30 30 C 1.31844 * 121.77519 * 0.53217 * 29 6 5 31 31 H 1.08996 * 109.47286 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47128 * 300.00193 * 1 2 3 33 33 H 1.09000 * 109.47132 * 60.00230 * 1 2 3 34 34 H 1.07992 * 120.81510 * 0.03716 * 4 3 2 35 35 H 1.07997 * 120.38335 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47187 * 245.00215 * 7 6 5 37 37 H 1.08997 * 109.46747 * 5.00442 * 7 6 5 38 38 H 0.97000 * 120.00252 * 0.02562 * 10 8 7 39 39 H 1.09003 * 109.47493 * 300.00326 * 13 11 10 40 40 H 1.09002 * 109.47224 * 60.00201 * 13 11 10 41 41 H 1.09003 * 109.47578 * 180.02562 * 13 11 10 42 42 H 1.09000 * 109.45965 * 298.70404 * 16 14 11 43 43 H 1.09002 * 109.45885 * 58.67384 * 16 14 11 44 44 H 1.08996 * 109.49538 * 181.31487 * 17 16 14 45 45 H 1.09003 * 109.49089 * 301.38453 * 17 16 14 46 46 H 1.09004 * 109.58355 * 65.15470 * 18 17 16 47 47 H 1.08997 * 109.58970 * 185.43478 * 18 17 16 48 48 H 0.96999 * 120.00177 * 180.02562 * 23 22 20 49 49 H 1.09008 * 109.58578 * 186.60326 * 28 19 18 50 50 H 1.08997 * 109.58567 * 66.18114 * 28 19 18 51 51 H 1.08003 * 119.65421 * 179.75326 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 -0.0005 5 6 4.0181 2.5519 0.0000 6 6 3.2079 3.6721 0.0062 7 6 3.8344 5.0427 0.0126 8 6 3.3011 5.8442 -1.1469 9 8 2.4916 5.3511 -1.9036 10 7 3.7237 7.1089 -1.3429 11 6 3.2057 7.8878 -2.4703 12 1 3.0395 7.2280 -3.3219 13 6 1.8843 8.5471 -2.0705 14 6 4.2195 8.9681 -2.8525 15 1 4.3869 9.6274 -2.0008 16 6 3.6788 9.7826 -4.0298 17 6 4.6775 10.8844 -4.3917 18 6 6.0046 10.2464 -4.8141 19 7 6.4589 9.3476 -3.7444 20 6 7.7137 9.4760 -3.2112 21 1 7.9032 9.1634 -2.1949 22 6 8.7421 10.0082 -3.9768 23 7 9.8086 10.5085 -3.3898 24 14 8.6123 10.0141 -5.8403 25 1 8.0279 11.3025 -6.2917 26 1 9.9647 9.8500 -6.4312 27 1 7.7410 8.8946 -6.2794 28 6 5.5415 8.3084 -3.2575 29 7 1.8944 3.5574 0.0013 30 6 1.3002 2.3805 0.0009 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 4.0432 0.4030 -0.0016 35 1 5.0931 2.6551 0.0001 36 1 3.5911 5.5491 0.9467 37 1 4.9164 4.9480 -0.0783 38 1 4.3714 7.5031 -0.7379 39 1 1.1620 7.7775 -1.7982 40 1 2.0505 9.2069 -1.2189 41 1 1.4986 9.1263 -2.9095 42 1 3.5341 9.1273 -4.8888 43 1 2.7259 10.2334 -3.7524 44 1 4.2811 11.4786 -5.2150 45 1 4.8410 11.5258 -3.5257 46 1 5.8605 9.6775 -5.7327 47 1 6.7483 11.0258 -4.9800 48 1 10.5270 10.8806 -3.9248 49 1 5.9804 7.8089 -2.3937 50 1 5.3596 7.5815 -4.0491 51 1 0.2215 2.3265 0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265705413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:10 Heat of formation + Delta-G solvation = -19.545857 kcal Electronic energy + Delta-G solvation = -30587.664612 eV Core-core repulsion = 26487.970260 eV Total energy + Delta-G solvation = -4099.694352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.97835 -39.79551 -38.55919 -37.90058 -35.33632 -33.09411 -32.63396 -32.59728 -31.22475 -30.68721 -29.01870 -28.31370 -27.34183 -25.20214 -24.01354 -23.55541 -22.55833 -21.88306 -20.81575 -20.27094 -19.32217 -18.46480 -17.45705 -16.99352 -16.62930 -16.41660 -16.17226 -15.60038 -15.37211 -15.16601 -14.49833 -14.40721 -14.28497 -14.13156 -13.85827 -13.59096 -13.29242 -13.23413 -13.17993 -12.93672 -12.70570 -12.43705 -12.33169 -12.23917 -12.16535 -12.01306 -11.70051 -11.57460 -11.33849 -11.26811 -10.77804 -10.53627 -10.35838 -10.11105 -9.97667 -9.89642 -9.71330 -9.62413 -9.49769 -9.42242 -8.89017 -8.59044 -8.58554 -6.96739 -5.95863 -3.31069 0.87626 1.07740 2.81185 2.83802 3.22355 3.32204 3.48775 3.52382 3.65612 4.07938 4.38412 4.44352 4.53040 4.62507 4.74753 4.75517 4.80401 4.98207 5.04540 5.12446 5.17101 5.19467 5.24357 5.27110 5.29267 5.40418 5.43083 5.50033 5.63127 5.66633 5.71148 5.85206 5.90982 5.96808 6.05143 6.10374 6.17336 6.24266 6.30702 6.34714 6.41559 6.56540 6.61643 6.65355 6.74030 6.77923 6.87626 6.99439 7.67032 7.82613 7.95526 8.31203 8.41114 8.93550 9.71845 10.10568 11.20027 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.002211 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.565209 B =12662.135375 C =13615.718410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.070 3.930 4 C -0.109 4.109 5 C -0.124 4.124 6 C 0.109 3.891 7 C -0.090 4.090 8 C 0.520 3.480 9 O -0.528 6.528 10 N -0.723 5.723 11 C 0.150 3.850 12 H 0.084 0.916 13 C -0.161 4.161 14 C -0.112 4.112 15 H 0.076 0.924 16 C -0.103 4.103 17 C -0.134 4.134 18 C 0.124 3.876 19 N -0.606 5.606 20 C -0.258 4.258 21 H 0.085 0.915 22 C 0.023 3.977 23 N -0.909 5.909 24 Si 0.883 3.117 25 H -0.289 1.289 26 H -0.304 1.304 27 H -0.271 1.271 28 C 0.158 3.842 29 N -0.420 5.420 30 C 0.024 3.976 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.401 0.599 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.023 0.977 47 H 0.071 0.929 48 H 0.262 0.738 49 H 0.061 0.939 50 H 0.021 0.979 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.947 -14.941 8.796 24.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.023 3.977 4 C -0.135 4.135 5 C -0.144 4.144 6 C -0.030 4.030 7 C -0.131 4.131 8 C 0.305 3.695 9 O -0.404 6.404 10 N -0.375 5.375 11 C 0.046 3.954 12 H 0.102 0.898 13 C -0.219 4.219 14 C -0.133 4.133 15 H 0.094 0.906 16 C -0.141 4.141 17 C -0.173 4.173 18 C -0.002 4.002 19 N -0.329 5.329 20 C -0.387 4.387 21 H 0.102 0.898 22 C -0.176 4.176 23 N -0.552 5.552 24 Si 0.714 3.286 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.196 1.196 28 C 0.032 3.968 29 N -0.129 5.129 30 C -0.135 4.135 31 H 0.120 0.880 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.236 0.764 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.041 0.959 47 H 0.089 0.911 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.039 0.961 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.781 -14.701 8.228 25.229 hybrid contribution 0.638 -0.361 -0.833 1.110 sum -18.142 -15.062 7.395 24.712 Atomic orbital electron populations 1.23115 0.78019 1.04262 1.01697 1.86062 1.21656 1.26198 1.88698 1.20100 0.93323 0.85722 0.98602 1.20870 0.91642 0.98788 1.02215 1.21841 1.01475 0.91608 0.99444 1.20462 0.89216 0.94346 0.98966 1.20569 1.01453 0.91715 0.99350 1.20195 0.81621 0.81680 0.86006 1.90710 1.32943 1.70247 1.46459 1.46073 1.46404 1.13766 1.31246 1.20960 0.93011 0.92582 0.88886 0.89815 1.22193 0.97351 1.00661 1.01715 1.21958 0.96053 0.96323 0.98968 0.90561 1.21455 0.97808 0.97407 0.97418 1.21997 0.96885 0.97543 1.00900 1.21339 0.94537 0.93412 0.90877 1.44341 1.12990 1.32987 1.42583 1.18890 0.83723 1.39420 0.96629 0.89761 1.25270 0.95436 0.99247 0.97671 1.69832 1.09385 1.40853 1.35101 0.86949 0.75739 0.77966 0.87967 1.21667 1.23237 1.19632 1.20889 0.88500 0.90052 0.97339 1.67288 1.11488 1.26210 1.07901 1.22852 1.00409 0.86985 1.03236 0.87964 0.92409 0.92302 0.83985 0.83814 0.87187 0.87064 0.76437 0.92520 0.92656 0.91556 0.92511 0.92485 0.92802 0.91744 0.95898 0.91094 0.92807 0.92085 0.96136 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.13 16 2 O -0.31 -2.92 10.51 -19.45 -0.20 -3.12 16 3 C 0.07 0.73 6.71 -39.07 -0.26 0.47 16 4 C -0.11 -1.06 10.13 -39.14 -0.40 -1.46 16 5 C -0.12 -1.21 9.70 -39.47 -0.38 -1.59 16 6 C 0.11 1.28 5.77 -82.58 -0.48 0.81 16 7 C -0.09 -0.90 6.10 -29.03 -0.18 -1.08 16 8 C 0.52 6.98 7.73 -10.98 -0.08 6.89 16 9 O -0.53 -9.20 14.98 5.56 0.08 -9.11 16 10 N -0.72 -8.91 4.48 -53.81 -0.24 -9.15 16 11 C 0.15 2.05 2.16 -67.94 -0.15 1.90 16 12 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 13 C -0.16 -1.97 9.13 37.15 0.34 -1.63 16 14 C -0.11 -1.71 1.97 -90.50 -0.18 -1.89 16 15 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.10 -1.54 4.85 -26.69 -0.13 -1.67 16 17 C -0.13 -2.31 6.08 -26.61 -0.16 -2.47 16 18 C 0.12 2.68 4.20 -3.71 -0.02 2.66 16 19 N -0.61 -14.04 2.77 -172.32 -0.48 -14.52 16 20 C -0.26 -7.05 10.04 -15.06 -0.15 -7.20 16 21 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 22 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 23 N -0.91 -27.52 13.97 55.49 0.78 -26.74 16 24 Si 0.88 22.44 24.35 -169.99 -4.14 18.30 16 25 H -0.29 -7.09 6.62 56.52 0.37 -6.71 16 26 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 27 H -0.27 -6.84 6.63 56.52 0.38 -6.47 16 28 C 0.16 3.00 5.56 -3.71 -0.02 2.98 16 29 N -0.42 -5.60 9.20 -9.35 -0.09 -5.69 16 30 C 0.02 0.27 10.22 -17.37 -0.18 0.09 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.26 7.68 -51.93 -0.40 -0.14 16 33 H 0.06 0.30 7.68 -51.93 -0.40 -0.09 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.14 1.01 7.95 -52.49 -0.42 0.59 16 36 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.11 0.83 7.87 -51.93 -0.41 0.42 16 38 H 0.40 4.19 8.43 -40.82 -0.34 3.85 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.76 6.40 -51.93 -0.33 0.43 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.73 6.36 -51.93 -0.33 0.40 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.02 0.50 7.08 -51.93 -0.37 0.13 16 47 H 0.07 1.69 4.50 -51.93 -0.23 1.46 16 48 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 49 H 0.06 1.12 7.45 -51.92 -0.39 0.74 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.16 1.37 6.32 -52.48 -0.33 1.03 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -35.35 398.99 -7.98 -43.33 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.18 Total: 2.20 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.52 Total: -1.51 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.03 Total: -56.10 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.12 Total: -12.24 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.14 Total: 18.30 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.35 -7.98 -43.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265705413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.781 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds