Wall clock time and date at job start Wed Apr 1 2020 04:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35909 * 116.99837 * 2 1 4 4 C 1.39140 * 120.47201 * 180.02562 * 3 2 1 5 5 C 1.38540 * 118.37240 * 180.02562 * 4 3 2 6 6 C 1.38248 * 119.22198 * 0.24242 * 5 4 3 7 7 C 1.50707 * 119.55722 * 179.74998 * 6 5 4 8 8 C 1.50705 * 109.46899 * 125.00301 * 7 6 5 9 9 O 1.21277 * 120.00164 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99524 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99717 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47314 * 325.00087 * 11 10 8 13 13 C 1.52992 * 109.47297 * 85.00039 * 11 10 8 14 14 C 1.52997 * 109.47417 * 205.00151 * 11 10 8 15 15 H 1.08997 * 109.49544 * 300.06815 * 14 11 10 16 16 C 1.53037 * 109.50397 * 180.02562 * 14 11 10 17 17 C 1.53042 * 109.54330 * 178.68444 * 16 14 11 18 18 C 1.53190 * 109.31232 * 61.36039 * 17 16 14 19 19 N 1.46921 * 108.77833 * 305.37066 * 18 17 16 20 20 C 1.36935 * 120.63233 * 233.60518 * 19 18 17 21 21 H 1.08002 * 120.00585 * 152.62353 * 20 19 18 22 22 C 1.38816 * 119.99967 * 332.62978 * 20 19 18 23 23 N 1.31618 * 120.00219 * 159.34204 * 22 20 19 24 24 Si 1.86800 * 119.99750 * 339.34120 * 22 20 19 25 25 H 1.48499 * 109.47503 * 92.95462 * 24 22 20 26 26 H 1.48502 * 109.46940 * 212.95251 * 24 22 20 27 27 H 1.48503 * 109.46941 * 332.95056 * 24 22 20 28 28 C 1.46928 * 118.74024 * 53.60531 * 19 18 17 29 29 N 1.31848 * 120.88918 * 359.48445 * 6 5 4 30 30 C 1.31844 * 121.77519 * 0.53217 * 29 6 5 31 31 H 1.08996 * 109.47286 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47128 * 300.00193 * 1 2 3 33 33 H 1.09000 * 109.47132 * 60.00230 * 1 2 3 34 34 H 1.07992 * 120.81510 * 0.03716 * 4 3 2 35 35 H 1.07997 * 120.38335 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47187 * 245.00215 * 7 6 5 37 37 H 1.08997 * 109.46747 * 5.00442 * 7 6 5 38 38 H 0.97000 * 120.00252 * 0.02562 * 10 8 7 39 39 H 1.09003 * 109.47493 * 300.00326 * 13 11 10 40 40 H 1.09002 * 109.47224 * 60.00201 * 13 11 10 41 41 H 1.09003 * 109.47578 * 180.02562 * 13 11 10 42 42 H 1.09000 * 109.45965 * 298.70404 * 16 14 11 43 43 H 1.09002 * 109.45885 * 58.67384 * 16 14 11 44 44 H 1.08996 * 109.49538 * 181.31487 * 17 16 14 45 45 H 1.09003 * 109.49089 * 301.38453 * 17 16 14 46 46 H 1.09004 * 109.58355 * 65.15470 * 18 17 16 47 47 H 1.08997 * 109.58970 * 185.43478 * 18 17 16 48 48 H 0.96999 * 120.00177 * 180.02562 * 23 22 20 49 49 H 1.09008 * 109.58578 * 186.60326 * 28 19 18 50 50 H 1.08997 * 109.58567 * 66.18114 * 28 19 18 51 51 H 1.08003 * 119.65421 * 179.75326 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 -0.0005 5 6 4.0181 2.5519 0.0000 6 6 3.2079 3.6721 0.0062 7 6 3.8344 5.0427 0.0126 8 6 3.3011 5.8442 -1.1469 9 8 2.4916 5.3511 -1.9036 10 7 3.7237 7.1089 -1.3429 11 6 3.2057 7.8878 -2.4703 12 1 3.0395 7.2280 -3.3219 13 6 1.8843 8.5471 -2.0705 14 6 4.2195 8.9681 -2.8525 15 1 4.3869 9.6274 -2.0008 16 6 3.6788 9.7826 -4.0298 17 6 4.6775 10.8844 -4.3917 18 6 6.0046 10.2464 -4.8141 19 7 6.4589 9.3476 -3.7444 20 6 7.7137 9.4760 -3.2112 21 1 7.9032 9.1634 -2.1949 22 6 8.7421 10.0082 -3.9768 23 7 9.8086 10.5085 -3.3898 24 14 8.6123 10.0141 -5.8403 25 1 8.0279 11.3025 -6.2917 26 1 9.9647 9.8500 -6.4312 27 1 7.7410 8.8946 -6.2794 28 6 5.5415 8.3084 -3.2575 29 7 1.8944 3.5574 0.0013 30 6 1.3002 2.3805 0.0009 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 4.0432 0.4030 -0.0016 35 1 5.0931 2.6551 0.0001 36 1 3.5911 5.5491 0.9467 37 1 4.9164 4.9480 -0.0783 38 1 4.3714 7.5031 -0.7379 39 1 1.1620 7.7775 -1.7982 40 1 2.0505 9.2069 -1.2189 41 1 1.4986 9.1263 -2.9095 42 1 3.5341 9.1273 -4.8888 43 1 2.7259 10.2334 -3.7524 44 1 4.2811 11.4786 -5.2150 45 1 4.8410 11.5258 -3.5257 46 1 5.8605 9.6775 -5.7327 47 1 6.7483 11.0258 -4.9800 48 1 10.5270 10.8806 -3.9248 49 1 5.9804 7.8089 -2.3937 50 1 5.3596 7.5815 -4.0491 51 1 0.2215 2.3265 0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265705413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:09 Heat of formation + Delta-G solvation = -44.054732 kcal Electronic energy + Delta-G solvation = -30588.727396 eV Core-core repulsion = 26487.970260 eV Total energy + Delta-G solvation = -4100.757137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.74909 -40.85513 -39.63753 -38.94776 -36.72055 -34.67890 -33.59400 -33.38324 -32.85685 -32.09797 -30.28218 -28.99582 -28.03574 -26.99060 -25.27376 -24.39815 -23.59349 -23.32312 -22.14279 -21.35627 -20.67260 -19.13769 -18.75083 -18.26483 -17.74394 -17.41593 -17.22517 -16.79846 -16.55298 -16.09576 -15.86761 -15.57145 -15.21255 -15.18968 -15.06037 -14.99601 -14.76657 -14.23546 -14.16923 -14.10478 -13.99046 -13.82622 -13.58067 -13.26996 -13.08894 -12.99314 -12.76253 -12.75158 -12.56790 -12.49365 -12.29750 -12.13474 -11.88580 -11.62838 -11.52517 -11.26750 -11.22947 -10.80861 -10.64889 -10.63080 -10.33620 -9.94509 -9.34372 -8.89939 -8.14969 -5.45192 0.11380 0.31117 1.28934 1.40871 1.49077 1.80905 2.22661 2.28853 2.42226 2.83929 3.06930 3.32257 3.33610 3.66544 3.73748 3.81490 3.92527 3.98983 4.05132 4.12533 4.22783 4.32341 4.35110 4.37501 4.40932 4.46762 4.55215 4.56648 4.59611 4.68060 4.69456 4.73872 4.74650 4.81241 4.91784 4.96588 5.01436 5.02681 5.09973 5.12030 5.20320 5.22298 5.29168 5.43919 5.52655 5.57407 5.68979 5.89047 6.14800 6.21373 6.69401 6.93811 7.03793 7.41384 7.64806 8.06565 9.04537 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.002211 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.565209 B =12662.135375 C =13615.718410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.066 3.934 4 C -0.118 4.118 5 C -0.122 4.122 6 C 0.086 3.914 7 C -0.085 4.085 8 C 0.517 3.483 9 O -0.572 6.572 10 N -0.718 5.718 11 C 0.158 3.842 12 H 0.064 0.936 13 C -0.152 4.152 14 C -0.097 4.097 15 H 0.078 0.922 16 C -0.101 4.101 17 C -0.126 4.126 18 C 0.115 3.885 19 N -0.619 5.619 20 C -0.241 4.241 21 H 0.060 0.940 22 C -0.035 4.035 23 N -0.954 5.954 24 Si 0.941 3.059 25 H -0.276 1.276 26 H -0.313 1.313 27 H -0.269 1.269 28 C 0.156 3.844 29 N -0.453 5.453 30 C 0.007 3.993 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.162 0.838 35 H 0.172 0.828 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.412 0.588 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.024 0.976 47 H 0.047 0.953 48 H 0.260 0.740 49 H 0.061 0.939 50 H 0.015 0.985 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.647 -15.273 8.832 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.018 3.982 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.053 4.053 7 C -0.125 4.125 8 C 0.304 3.696 9 O -0.451 6.451 10 N -0.370 5.370 11 C 0.053 3.947 12 H 0.082 0.918 13 C -0.210 4.210 14 C -0.117 4.117 15 H 0.096 0.904 16 C -0.139 4.139 17 C -0.165 4.165 18 C -0.010 4.010 19 N -0.343 5.343 20 C -0.371 4.371 21 H 0.078 0.922 22 C -0.229 4.229 23 N -0.601 5.601 24 Si 0.771 3.229 25 H -0.203 1.203 26 H -0.242 1.242 27 H -0.194 1.194 28 C 0.031 3.969 29 N -0.163 5.163 30 C -0.151 4.151 31 H 0.143 0.857 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.180 0.820 35 H 0.189 0.811 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.248 0.752 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.042 0.958 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.079 0.921 50 H 0.033 0.967 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -20.526 -15.033 8.270 26.752 hybrid contribution 1.099 -0.351 -0.788 1.397 sum -19.426 -15.383 7.482 25.885 Atomic orbital electron populations 1.23393 0.76235 1.05989 1.02277 1.86049 1.23575 1.25670 1.88486 1.20238 0.93845 0.85928 0.98183 1.21232 0.91764 0.99678 1.01726 1.22154 1.02748 0.91032 0.98250 1.20822 0.89187 0.95609 0.99704 1.20655 1.02689 0.90647 0.98525 1.20784 0.80835 0.81718 0.86273 1.90690 1.34985 1.71130 1.48256 1.46046 1.46373 1.13631 1.30938 1.20776 0.93312 0.91773 0.88844 0.91816 1.22109 0.95865 1.00399 1.02650 1.21754 0.94229 0.96470 0.99254 0.90396 1.21481 0.98466 0.96747 0.97189 1.21905 0.94899 0.98099 1.01605 1.21419 0.96280 0.92713 0.90563 1.44494 1.12269 1.34621 1.42920 1.18896 0.85441 1.37090 0.95634 0.92189 1.25836 0.95541 1.00218 1.01347 1.69945 1.10532 1.43254 1.36352 0.86003 0.75066 0.78467 0.83369 1.20272 1.24215 1.19357 1.21032 0.89559 0.89330 0.96996 1.67256 1.12637 1.27308 1.09080 1.23101 1.01266 0.86992 1.03742 0.85700 0.91421 0.92144 0.82034 0.81086 0.85181 0.84353 0.75213 0.93807 0.91443 0.90293 0.92353 0.89291 0.90168 0.92283 0.95774 0.93515 0.93091 0.92063 0.96714 0.81481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 113.37 1.11 1.27 16 2 O -0.33 -5.77 10.51 -92.53 -0.97 -6.75 16 3 C 0.07 1.34 6.71 22.60 0.15 1.49 16 4 C -0.12 -2.16 10.13 22.56 0.23 -1.93 16 5 C -0.12 -2.21 9.70 22.34 0.22 -1.99 16 6 C 0.09 1.94 5.77 42.56 0.25 2.18 16 7 C -0.09 -1.56 6.10 29.11 0.18 -1.38 16 8 C 0.52 13.36 7.73 87.66 0.68 14.04 16 9 O -0.57 -19.88 14.98 -3.02 -0.05 -19.92 16 10 N -0.72 -16.58 4.48 -442.56 -1.98 -18.56 16 11 C 0.16 4.02 2.16 44.99 0.10 4.12 16 12 H 0.06 1.92 7.58 -2.39 -0.02 1.91 16 13 C -0.15 -3.34 9.13 71.98 0.66 -2.68 16 14 C -0.10 -2.72 1.97 -10.72 -0.02 -2.75 16 15 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 16 C -0.10 -2.69 4.85 30.62 0.15 -2.54 16 17 C -0.13 -3.98 6.08 30.67 0.19 -3.80 16 18 C 0.12 4.80 4.20 86.36 0.36 5.16 16 19 N -0.62 -28.22 2.77 -699.09 -1.94 -30.15 16 20 C -0.24 -13.25 10.04 84.03 0.84 -12.41 16 21 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 22 C -0.03 -2.01 5.23 84.86 0.44 -1.56 16 23 N -0.95 -59.13 13.97 21.65 0.30 -58.83 16 24 Si 0.94 46.86 24.35 68.60 1.67 48.53 16 25 H -0.28 -13.00 6.62 99.48 0.66 -12.34 16 26 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 27 H -0.27 -13.06 6.63 99.48 0.66 -12.40 16 28 C 0.16 5.72 5.56 86.36 0.48 6.20 16 29 N -0.45 -12.04 9.20 -183.48 -1.69 -13.73 16 30 C 0.01 0.17 10.22 84.80 0.87 1.03 16 31 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.54 7.68 -2.39 -0.02 0.52 16 33 H 0.06 0.58 7.68 -2.39 -0.02 0.57 16 34 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.17 1.96 7.95 -2.91 -0.02 1.94 16 36 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.14 1.71 7.87 -2.39 -0.02 1.69 16 38 H 0.41 7.81 8.43 -92.71 -0.78 7.03 16 39 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.53 6.40 -2.39 -0.02 1.51 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.09 1.88 6.36 -2.39 -0.02 1.86 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.02 1.01 7.08 -2.38 -0.02 0.99 16 47 H 0.05 2.17 4.50 -2.39 -0.01 2.16 16 48 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 49 H 0.06 2.20 7.45 -2.38 -0.02 2.19 16 50 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.17 2.98 6.32 -2.91 -0.02 2.96 16 Total: -1.00 -78.42 398.99 2.29 -76.14 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.06 Total: 18.84 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 6.88 Total: 4.44 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -5.30 Total: -121.27 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -1.02 Total: -26.67 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.67 Total: 48.53 kcal Total: -78.42 2.29 -76.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265705413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.083 kcal (2) G-P(sol) polarization free energy of solvation -78.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds