Wall clock time and date at job start Wed Apr 1 2020 04:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47006 * 2 1 4 4 N 1.46497 * 109.47203 * 120.00075 * 2 1 3 5 5 C 1.34778 * 120.00078 * 274.99965 * 4 2 1 6 6 O 1.21286 * 120.00100 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00118 * 180.02562 * 5 4 2 8 8 O 1.42901 * 109.47261 * 179.97438 * 7 5 4 9 9 C 1.42901 * 114.00264 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47126 * 179.97438 * 9 8 7 11 11 C 1.38649 * 120.79159 * 269.72100 * 10 9 8 12 12 C 1.38202 * 119.16358 * 179.75799 * 11 10 9 13 13 N 1.31872 * 120.76245 * 0.53048 * 12 11 10 14 14 C 1.31870 * 121.72352 * 359.74443 * 13 12 11 15 15 C 1.38201 * 120.76863 * 359.97438 * 14 13 12 16 16 C 1.52996 * 109.47131 * 240.00214 * 2 1 3 17 17 H 1.09007 * 109.50112 * 185.06344 * 16 2 1 18 18 C 1.53039 * 109.49907 * 64.99960 * 16 2 1 19 19 C 1.53045 * 109.53905 * 178.68617 * 18 16 2 20 20 C 1.53192 * 109.31150 * 61.36358 * 19 18 16 21 21 N 1.46930 * 108.77645 * 305.36259 * 20 19 18 22 22 C 1.36927 * 120.62984 * 233.58731 * 21 20 19 23 23 H 1.08009 * 119.99693 * 152.80333 * 22 21 20 24 24 C 1.38810 * 120.00734 * 332.80054 * 22 21 20 25 25 N 1.31620 * 120.00515 * 159.75120 * 24 22 21 26 26 Si 1.86801 * 119.99708 * 339.75864 * 24 22 21 27 27 H 1.48498 * 109.47342 * 94.88765 * 26 24 22 28 28 H 1.48498 * 109.47227 * 214.89288 * 26 24 22 29 29 H 1.48504 * 109.47008 * 334.88781 * 26 24 22 30 30 C 1.46928 * 118.73447 * 53.61294 * 21 20 19 31 31 H 1.08997 * 109.46975 * 300.00095 * 1 2 3 32 32 H 1.09003 * 109.47193 * 59.99725 * 1 2 3 33 33 H 1.08997 * 109.47091 * 179.97438 * 1 2 3 34 34 H 0.97002 * 120.00325 * 95.00145 * 4 2 1 35 35 H 1.09003 * 109.47337 * 299.99869 * 7 5 4 36 36 H 1.09000 * 109.47415 * 59.99976 * 7 5 4 37 37 H 1.08996 * 109.47187 * 300.00542 * 9 8 7 38 38 H 1.09005 * 109.46702 * 59.99823 * 9 8 7 39 39 H 1.08004 * 120.41795 * 0.02562 * 11 10 9 40 40 H 1.07997 * 119.62391 * 180.29345 * 12 11 10 41 41 H 1.08003 * 119.61799 * 179.97438 * 14 13 12 42 42 H 1.07997 * 120.42312 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.45912 * 298.70340 * 18 16 2 44 44 H 1.09004 * 109.46060 * 58.67757 * 18 16 2 45 45 H 1.09003 * 109.49441 * 181.31647 * 19 18 16 46 46 H 1.08999 * 109.49310 * 301.38083 * 19 18 16 47 47 H 1.08997 * 109.59004 * 65.15714 * 20 19 18 48 48 H 1.09007 * 109.58374 * 185.57752 * 20 19 18 49 49 H 0.96996 * 120.00288 * 180.02562 * 25 24 22 50 50 H 1.08996 * 109.58608 * 186.60154 * 30 21 20 51 51 H 1.08999 * 109.58896 * 66.17708 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6499 -0.7285 3.5874 8 8 2.6985 0.1898 4.6812 9 6 3.1641 -0.3860 5.9034 10 6 3.1751 0.6661 6.9822 11 6 4.3010 1.4445 7.2031 12 6 4.2723 2.4031 8.1982 13 7 3.1951 2.5740 8.9394 14 6 2.1086 1.8483 8.7612 15 6 2.0614 0.8747 7.7815 16 6 2.0400 -0.7212 -1.2492 17 1 3.1262 -0.8007 -1.2055 18 6 1.6354 0.0687 -2.4960 19 6 2.1732 -0.6346 -3.7444 20 6 1.5611 -2.0356 -3.8399 21 7 1.8219 -2.7523 -2.5840 22 6 2.4217 -3.9832 -2.5948 23 1 2.9977 -4.3106 -1.7419 24 6 2.2894 -4.8102 -3.7018 25 7 3.1509 -5.7850 -3.9018 26 14 0.8888 -4.5394 -4.9078 27 1 1.3618 -3.6957 -6.0346 28 1 0.4258 -5.8498 -5.4310 29 1 -0.2348 -3.8575 -4.2165 30 6 1.4263 -2.1232 -1.3165 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2491 -1.6318 1.1526 35 1 1.9778 -1.5509 3.8325 36 1 3.6493 -1.1203 3.3978 37 1 2.5021 -1.2008 6.1966 38 1 4.1738 -0.7714 5.7619 39 1 5.1877 1.3065 6.6021 40 1 5.1435 3.0168 8.3734 41 1 1.2454 2.0167 9.3882 42 1 1.1688 0.2833 7.6406 43 1 0.5485 0.1271 -2.5521 44 1 2.0507 1.0750 -2.4390 45 1 1.9047 -0.0590 -4.6303 46 1 3.2582 -0.7148 -3.6777 47 1 0.4857 -1.9546 -3.9979 48 1 2.0147 -2.5767 -4.6704 49 1 3.0587 -6.3626 -4.6755 50 1 1.7910 -2.7221 -0.4820 51 1 0.3399 -2.0493 -1.2686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265708294.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:38 Heat of formation + Delta-G solvation = -46.659328 kcal Electronic energy + Delta-G solvation = -30021.328414 eV Core-core repulsion = 25920.458334 eV Total energy + Delta-G solvation = -4100.870080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.23894 -41.02674 -39.76303 -38.55188 -36.72861 -34.71936 -34.22025 -33.04348 -32.45122 -32.15540 -30.11052 -29.06811 -27.21509 -27.16698 -25.35334 -24.42882 -23.73214 -22.99220 -22.65801 -21.38207 -20.22607 -18.81499 -18.46496 -17.84839 -17.70530 -17.48008 -17.20055 -16.89413 -16.58653 -16.52137 -16.20436 -15.61432 -15.47057 -15.27157 -15.05711 -14.83832 -14.74321 -14.56489 -14.54349 -14.05672 -13.99310 -13.81470 -13.53572 -13.23157 -13.15323 -12.94410 -12.80031 -12.76074 -12.46196 -12.26510 -12.06023 -11.89237 -11.61707 -11.44865 -11.34036 -11.21080 -10.91797 -10.77587 -10.67088 -10.63285 -10.47830 -10.09880 -10.08331 -8.87646 -8.13790 -5.44298 0.12847 0.18997 1.31950 1.43060 1.51248 1.59653 1.86356 2.44033 2.74131 3.07810 3.14595 3.34201 3.57574 3.67372 3.78054 3.81989 3.87442 3.94417 4.00799 4.12023 4.19412 4.22735 4.23988 4.29361 4.31371 4.42697 4.43680 4.45213 4.56312 4.59935 4.69653 4.72885 4.79667 4.87889 4.91589 4.98103 4.98632 5.01786 5.11826 5.14545 5.26418 5.28245 5.33512 5.39176 5.51816 5.61859 5.74632 5.89430 5.97260 6.15618 6.55973 6.94914 6.99203 7.23763 7.66117 8.07238 9.05664 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.001813 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.706368 B =15442.928239 C =16063.244645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.160 3.840 3 H 0.076 0.924 4 N -0.713 5.713 5 C 0.511 3.489 6 O -0.574 6.574 7 C 0.044 3.956 8 O -0.389 6.389 9 C 0.097 3.903 10 C -0.061 4.061 11 C -0.158 4.158 12 C 0.083 3.917 13 N -0.512 5.512 14 C 0.083 3.917 15 C -0.157 4.157 16 C -0.100 4.100 17 H 0.065 0.935 18 C -0.100 4.100 19 C -0.128 4.128 20 C 0.116 3.884 21 N -0.619 5.619 22 C -0.241 4.241 23 H 0.058 0.942 24 C -0.037 4.037 25 N -0.958 5.958 26 Si 0.944 3.056 27 H -0.281 1.281 28 H -0.316 1.316 29 H -0.258 1.258 30 C 0.150 3.850 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.153 0.847 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.154 0.846 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.051 0.949 47 H 0.034 0.966 48 H 0.043 0.957 49 H 0.259 0.741 50 H 0.060 0.940 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.826 12.804 20.006 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.055 3.945 3 H 0.094 0.906 4 N -0.367 5.367 5 C 0.298 3.702 6 O -0.453 6.453 7 C -0.035 4.035 8 O -0.308 6.308 9 C 0.021 3.979 10 C -0.069 4.069 11 C -0.177 4.177 12 C -0.073 4.073 13 N -0.222 5.222 14 C -0.073 4.073 15 C -0.176 4.176 16 C -0.121 4.121 17 H 0.084 0.916 18 C -0.138 4.138 19 C -0.167 4.167 20 C -0.008 4.008 21 N -0.343 5.343 22 C -0.371 4.371 23 H 0.076 0.924 24 C -0.232 4.232 25 N -0.604 5.604 26 Si 0.774 3.226 27 H -0.208 1.208 28 H -0.245 1.245 29 H -0.182 1.182 30 C 0.025 3.975 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.171 0.829 40 H 0.194 0.806 41 H 0.194 0.806 42 H 0.172 0.828 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.044 14.340 20.610 25.191 hybrid contribution -0.147 -1.732 -1.583 2.351 sum -2.191 12.608 19.027 22.930 Atomic orbital electron populations 1.22224 0.94657 1.02736 1.02253 1.20831 0.94558 0.96204 0.82921 0.90607 1.46026 1.66829 1.14806 1.09023 1.20801 0.77230 0.86974 0.85162 1.90704 1.51173 1.17906 1.85478 1.22369 1.04044 0.92228 0.84874 1.88027 1.87685 1.36792 1.18296 1.21550 1.01306 0.93370 0.81636 1.20288 0.94265 0.96861 0.95499 1.22363 0.99952 0.96189 0.99214 1.23181 0.96740 0.96020 0.91408 1.67689 1.01060 1.26162 1.27251 1.23191 0.96468 0.91422 0.96261 1.22363 0.99283 0.99683 0.96302 1.21750 1.00376 0.96072 0.93856 0.91639 1.21452 1.01445 0.98293 0.92639 1.21917 1.00217 0.95611 0.98956 1.21423 0.97490 0.93345 0.88575 1.44459 1.70698 1.16990 1.02140 1.18888 1.23033 0.92123 1.03069 0.92386 1.25865 1.00279 0.96497 1.00540 1.69955 1.37054 1.22873 1.30536 0.85954 0.82138 0.75101 0.79451 1.20847 1.24497 1.18193 1.21230 0.97141 0.91800 0.87322 0.93423 0.90408 0.91487 0.75074 0.87020 0.87326 0.89550 0.89719 0.82923 0.80625 0.80569 0.82812 0.90821 0.90568 0.90175 0.93026 0.94854 0.93847 0.93173 0.92138 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 8.76 71.98 0.63 -2.99 16 2 C 0.16 3.82 2.35 44.99 0.11 3.92 16 3 H 0.08 2.01 7.58 -2.38 -0.02 1.99 16 4 N -0.71 -15.35 5.01 -442.54 -2.22 -17.57 16 5 C 0.51 12.27 7.87 87.66 0.69 12.96 16 6 O -0.57 -19.32 16.16 15.99 0.26 -19.06 16 7 C 0.04 0.70 6.42 71.23 0.46 1.15 16 8 O -0.39 -8.00 9.86 -129.94 -1.28 -9.28 16 9 C 0.10 1.26 6.11 71.24 0.44 1.69 16 10 C -0.06 -0.97 5.55 -19.67 -0.11 -1.08 16 11 C -0.16 -2.41 9.82 22.36 0.22 -2.19 16 12 C 0.08 1.36 11.18 84.68 0.95 2.30 16 13 N -0.51 -10.07 10.36 -195.85 -2.03 -12.10 16 14 C 0.08 1.34 11.18 84.68 0.95 2.29 16 15 C -0.16 -2.36 9.82 22.36 0.22 -2.14 16 16 C -0.10 -2.70 2.27 -10.72 -0.02 -2.73 16 17 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 18 C -0.10 -2.57 4.89 30.62 0.15 -2.42 16 19 C -0.13 -3.96 6.08 30.67 0.19 -3.77 16 20 C 0.12 4.63 4.19 86.36 0.36 4.99 16 21 N -0.62 -26.71 2.77 -699.09 -1.94 -28.65 16 22 C -0.24 -12.87 10.04 84.03 0.84 -12.03 16 23 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 24 C -0.04 -2.11 5.24 84.86 0.44 -1.66 16 25 N -0.96 -58.61 13.97 21.65 0.30 -58.31 16 26 Si 0.94 45.36 24.35 68.60 1.67 47.03 16 27 H -0.28 -12.98 6.70 99.48 0.67 -12.31 16 28 H -0.32 -15.62 7.11 99.48 0.71 -14.91 16 29 H -0.26 -11.68 6.45 99.48 0.64 -11.04 16 30 C 0.15 4.92 5.26 86.36 0.45 5.37 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.60 6.60 -2.39 -0.02 1.58 16 33 H 0.07 1.49 6.23 -2.39 -0.01 1.48 16 34 H 0.41 7.46 7.28 -92.71 -0.68 6.79 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 0.74 8.10 -2.39 -0.02 0.72 16 38 H 0.08 0.76 8.10 -2.38 -0.02 0.74 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 43 H 0.07 1.74 6.63 -2.39 -0.02 1.73 16 44 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.03 1.28 6.98 -2.39 -0.02 1.26 16 48 H 0.04 1.96 4.50 -2.38 -0.01 1.95 16 49 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 50 H 0.06 1.92 6.75 -2.39 -0.02 1.90 16 51 H 0.04 1.33 6.06 -2.39 -0.01 1.32 16 Total: -1.00 -77.44 400.17 1.88 -75.57 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.16 Total: 18.69 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 6.96 Total: 3.68 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -5.88 Total: -116.63 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.02 Total: -28.34 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.67 Total: 47.03 kcal Total: -77.44 1.88 -75.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265708294.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.908 kcal (2) G-P(sol) polarization free energy of solvation -77.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds