Wall clock time and date at job start Wed Apr 1 2020 04:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46505 * 2 1 4 4 N 1.46491 * 109.47108 * 240.00411 * 2 1 3 5 5 C 1.34769 * 120.00546 * 85.00129 * 4 2 1 6 6 O 1.21284 * 119.99883 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00431 * 179.97438 * 5 4 2 8 8 O 1.42900 * 109.47514 * 179.97438 * 7 5 4 9 9 C 1.42902 * 114.00320 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47141 * 180.02562 * 9 8 7 11 11 C 1.38658 * 120.78736 * 269.71867 * 10 9 8 12 12 C 1.38208 * 119.15633 * 179.75705 * 11 10 9 13 13 N 1.31865 * 120.76549 * 0.53305 * 12 11 10 14 14 C 1.31868 * 121.73061 * 359.73833 * 13 12 11 15 15 C 1.38205 * 120.76059 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.46828 * 120.00064 * 2 1 3 17 17 H 1.09000 * 109.49172 * 179.97438 * 16 2 1 18 18 C 1.53043 * 109.49832 * 299.99979 * 16 2 1 19 19 C 1.53042 * 109.54007 * 181.32078 * 18 16 2 20 20 C 1.53192 * 109.31010 * 298.63729 * 19 18 16 21 21 N 1.46932 * 108.77633 * 54.63009 * 20 19 18 22 22 C 1.36935 * 120.62645 * 126.41560 * 21 20 19 23 23 H 1.07999 * 120.00126 * 207.67692 * 22 21 20 24 24 C 1.38817 * 120.00371 * 27.66779 * 22 21 20 25 25 N 1.31618 * 119.99831 * 17.37160 * 24 22 21 26 26 Si 1.86803 * 120.00217 * 197.36812 * 24 22 21 27 27 H 1.48503 * 109.46939 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46671 * 120.00178 * 26 24 22 29 29 H 1.48497 * 109.46880 * 239.99958 * 26 24 22 30 30 C 1.46924 * 118.74154 * 306.39497 * 21 20 19 31 31 H 1.09000 * 109.47110 * 300.00132 * 1 2 3 32 32 H 1.09007 * 109.46799 * 60.00079 * 1 2 3 33 33 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99651 * 264.99656 * 4 2 1 35 35 H 1.08998 * 109.47193 * 300.00084 * 7 5 4 36 36 H 1.09007 * 109.46991 * 59.99846 * 7 5 4 37 37 H 1.08995 * 109.46736 * 300.00455 * 9 8 7 38 38 H 1.09000 * 109.46726 * 59.99649 * 9 8 7 39 39 H 1.08000 * 120.41767 * 359.97438 * 11 10 9 40 40 H 1.08004 * 119.61093 * 180.28951 * 12 11 10 41 41 H 1.07992 * 119.62290 * 179.97438 * 14 13 12 42 42 H 1.08000 * 120.41626 * 180.02562 * 15 14 13 43 43 H 1.09003 * 109.45948 * 301.34097 * 18 16 2 44 44 H 1.08995 * 109.45778 * 61.31135 * 18 16 2 45 45 H 1.08996 * 109.49489 * 58.58614 * 19 18 16 46 46 H 1.09000 * 109.49594 * 178.65513 * 19 18 16 47 47 H 1.08998 * 109.58870 * 174.42177 * 20 19 18 48 48 H 1.09003 * 109.58325 * 294.70561 * 20 19 18 49 49 H 0.97000 * 120.00072 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.58266 * 293.82003 * 30 21 20 51 51 H 1.09000 * 109.58289 * 173.39479 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1585 -2.4116 7 6 2.6500 -0.7284 -3.5874 8 8 2.6975 0.1896 -4.6815 9 6 3.1630 -0.3862 -5.9037 10 6 3.1728 0.6657 -6.9828 11 6 2.0606 0.8694 -7.7854 12 6 2.1047 1.8468 -8.7617 13 7 3.1907 2.5730 -8.9405 14 6 4.2684 2.4031 -8.1998 15 6 4.2960 1.4488 -7.2005 16 6 2.0400 -0.7213 1.2492 17 1 3.1300 -0.7219 1.2494 18 6 1.5301 -0.0003 2.4992 19 6 2.0666 -0.7016 3.7492 20 6 1.5534 -2.1446 3.7802 21 7 1.9149 -2.8024 2.5170 22 6 2.6006 -3.9877 2.5191 23 1 3.2384 -4.2440 1.6860 24 6 2.4763 -4.8597 3.5919 25 7 1.4694 -4.7325 4.4300 26 14 3.7378 -6.2138 3.8461 27 1 4.7632 -6.1425 2.7743 28 1 4.3913 -6.0396 5.1681 29 1 3.0619 -7.5352 3.7983 30 6 1.5264 -2.1644 1.2518 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6316 -1.1526 35 1 3.6493 -1.1202 -3.3978 36 1 1.9778 -1.5508 -3.8325 37 1 4.1729 -0.7709 -5.7625 38 1 2.5013 -1.2014 -6.1964 39 1 1.1700 0.2743 -7.6471 40 1 1.2409 2.0149 -9.3879 41 1 5.1394 3.0168 -8.3759 42 1 5.1815 1.3147 -6.5969 43 1 1.8738 1.0341 2.4874 44 1 0.4404 -0.0207 2.5111 45 1 3.1563 -0.7035 3.7258 46 1 1.7227 -0.1734 4.6386 47 1 2.0110 -2.6774 4.6137 48 1 0.4696 -2.1445 3.8973 49 1 1.3827 -5.3417 5.1799 50 1 0.4403 -2.1659 1.1604 51 1 1.9663 -2.7104 0.4172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265708296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:45 Heat of formation + Delta-G solvation = -49.762757 kcal Electronic energy + Delta-G solvation = -29972.723117 eV Core-core repulsion = 25871.718462 eV Total energy + Delta-G solvation = -4101.004655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.22743 -41.01124 -39.62391 -38.51225 -36.61860 -34.68141 -34.21409 -32.65724 -32.23391 -32.15235 -29.85596 -29.03380 -27.24178 -27.15215 -25.08410 -24.42641 -23.87943 -22.98830 -22.31566 -21.35151 -20.10210 -18.79200 -18.40138 -17.82717 -17.69927 -17.45036 -16.89581 -16.79376 -16.56621 -16.51560 -15.96583 -15.67355 -15.43924 -15.19960 -15.04048 -14.74830 -14.67173 -14.54747 -14.12288 -14.04901 -13.93698 -13.69910 -13.30771 -13.15509 -13.03523 -12.79524 -12.76267 -12.66346 -12.45821 -12.24763 -12.03800 -11.92029 -11.68626 -11.49063 -11.24878 -11.05501 -10.90658 -10.76774 -10.65838 -10.50376 -10.47502 -10.09566 -10.07431 -8.63595 -7.84234 -5.28677 0.13180 0.19250 1.47123 1.50238 1.59279 1.60525 1.86987 2.52816 2.74566 3.15141 3.30701 3.57266 3.59190 3.69784 3.78474 3.85791 3.95544 4.00758 4.07348 4.12418 4.19758 4.23924 4.28942 4.36271 4.43418 4.44377 4.45962 4.48815 4.67404 4.69976 4.71709 4.86339 4.88154 4.91287 4.98408 4.99412 5.05552 5.15979 5.22264 5.30668 5.33823 5.36414 5.49257 5.53418 5.60817 5.70478 5.74936 5.81491 5.98159 6.41804 6.57428 6.99502 7.17732 7.24761 7.90060 8.41639 9.21919 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.001859 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.049097 B =15057.952719 C =16118.084812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.161 3.839 3 H 0.075 0.925 4 N -0.712 5.712 5 C 0.510 3.490 6 O -0.575 6.575 7 C 0.045 3.955 8 O -0.389 6.389 9 C 0.097 3.903 10 C -0.061 4.061 11 C -0.157 4.157 12 C 0.083 3.917 13 N -0.512 5.512 14 C 0.083 3.917 15 C -0.157 4.157 16 C -0.096 4.096 17 H 0.067 0.933 18 C -0.099 4.099 19 C -0.132 4.132 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.256 4.256 23 H 0.072 0.928 24 C -0.053 4.053 25 N -0.935 5.935 26 Si 0.963 3.037 27 H -0.263 1.263 28 H -0.295 1.295 29 H -0.295 1.295 30 C 0.151 3.849 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.412 0.588 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.154 0.846 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.153 0.847 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.067 0.933 47 H 0.049 0.951 48 H -0.005 1.005 49 H 0.248 0.752 50 H 0.022 0.978 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 8.815 -21.369 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.093 0.907 4 N -0.366 5.366 5 C 0.297 3.703 6 O -0.454 6.454 7 C -0.034 4.034 8 O -0.308 6.308 9 C 0.021 3.979 10 C -0.069 4.069 11 C -0.177 4.177 12 C -0.074 4.074 13 N -0.222 5.222 14 C -0.074 4.074 15 C -0.177 4.177 16 C -0.117 4.117 17 H 0.085 0.915 18 C -0.137 4.137 19 C -0.171 4.171 20 C 0.048 3.952 21 N -0.331 5.331 22 C -0.386 4.386 23 H 0.090 0.910 24 C -0.249 4.249 25 N -0.582 5.582 26 Si 0.791 3.209 27 H -0.187 1.187 28 H -0.222 1.222 29 H -0.222 1.222 30 C 0.025 3.975 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.250 0.750 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.172 0.828 40 H 0.194 0.806 41 H 0.194 0.806 42 H 0.171 0.829 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.014 0.986 49 H 0.057 0.943 50 H 0.040 0.960 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.241 10.363 -21.933 24.473 hybrid contribution 0.467 -2.129 1.357 2.568 sum 3.708 8.234 -20.575 22.470 Atomic orbital electron populations 1.22205 0.94986 1.02472 1.02069 1.20803 0.94327 0.96170 0.83126 0.90685 1.46024 1.66770 1.14805 1.08974 1.20843 0.77253 0.86989 0.85173 1.90703 1.51197 1.17994 1.85475 1.22364 1.04098 0.92175 0.84765 1.88030 1.87695 1.36834 1.18287 1.21551 1.01339 0.93358 0.81605 1.20294 0.94278 0.96869 0.95486 1.22369 0.99277 0.99701 0.96308 1.23188 0.96481 0.91405 0.96286 1.67682 1.01048 1.26148 1.27297 1.23182 0.96729 0.96049 0.91398 1.22365 0.99976 0.96157 0.99196 1.21728 1.00241 0.96248 0.93490 0.91482 1.21436 1.00563 0.98489 0.93223 1.22016 1.00075 0.96934 0.98042 1.20598 0.95031 0.90384 0.89147 1.44284 1.65548 1.22209 1.01108 1.19563 1.18620 0.94980 1.05458 0.91028 1.25763 0.98889 1.00081 1.00133 1.70197 1.30142 1.40081 1.17748 0.85276 0.79218 0.78805 0.77560 1.18738 1.22243 1.22217 1.21108 0.96518 0.91474 0.88370 0.90732 0.93334 0.91916 0.75036 0.87135 0.87035 0.89624 0.89558 0.82831 0.80597 0.80618 0.82885 0.90974 0.91776 0.93256 0.91457 0.93226 0.98646 0.94322 0.95978 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 8.79 71.98 0.63 -3.44 16 2 C 0.16 4.20 2.41 44.99 0.11 4.31 16 3 H 0.08 2.14 7.58 -2.38 -0.02 2.12 16 4 N -0.71 -16.20 5.00 -442.55 -2.21 -18.41 16 5 C 0.51 12.65 7.87 87.66 0.69 13.34 16 6 O -0.57 -19.91 16.16 15.99 0.26 -19.65 16 7 C 0.05 0.72 6.42 71.24 0.46 1.18 16 8 O -0.39 -8.07 9.86 -129.94 -1.28 -9.35 16 9 C 0.10 1.25 6.11 71.23 0.44 1.69 16 10 C -0.06 -0.98 5.55 -19.67 -0.11 -1.09 16 11 C -0.16 -2.38 9.82 22.36 0.22 -2.16 16 12 C 0.08 1.35 11.18 84.68 0.95 2.30 16 13 N -0.51 -10.12 10.36 -195.85 -2.03 -12.15 16 14 C 0.08 1.36 11.18 84.68 0.95 2.30 16 15 C -0.16 -2.40 9.82 22.36 0.22 -2.18 16 16 C -0.10 -2.87 2.33 -10.72 -0.02 -2.89 16 17 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 18 C -0.10 -2.95 4.77 30.62 0.15 -2.81 16 19 C -0.13 -4.69 6.08 30.67 0.19 -4.50 16 20 C 0.17 8.08 5.31 86.36 0.46 8.54 16 21 N -0.61 -28.44 3.00 -699.10 -2.09 -30.53 16 22 C -0.26 -13.21 9.59 84.04 0.81 -12.41 16 23 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 24 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 25 N -0.94 -54.00 11.19 21.65 0.24 -53.75 16 26 Si 0.96 43.24 29.59 68.60 2.03 45.27 16 27 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 29 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 30 C 0.15 5.43 5.30 86.36 0.46 5.88 16 31 H 0.07 1.81 6.46 -2.39 -0.02 1.80 16 32 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.06 1.63 6.32 -2.39 -0.02 1.62 16 34 H 0.41 7.85 6.98 -92.71 -0.65 7.20 16 35 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.09 0.74 8.10 -2.39 -0.02 0.72 16 38 H 0.09 0.74 8.10 -2.39 -0.02 0.72 16 39 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 42 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 43 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 1.89 6.50 -2.39 -0.02 1.87 16 45 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.05 2.65 6.04 -2.39 -0.01 2.64 16 48 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 49 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 50 H 0.02 0.83 6.18 -2.39 -0.01 0.81 16 51 H 0.06 1.95 6.52 -2.39 -0.02 1.94 16 Total: -1.00 -74.65 406.24 2.19 -72.46 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.28 Total: 20.53 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 6.99 Total: 5.60 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -6.09 Total: -114.85 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -1.02 Total: -29.00 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -74.65 2.19 -72.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265708296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.696 kcal (2) G-P(sol) polarization free energy of solvation -74.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds