Wall clock time and date at job start Wed Apr 1 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35911 * 116.99777 * 2 1 4 4 C 1.39140 * 120.47511 * 359.97025 * 3 2 1 5 5 C 1.38536 * 118.37831 * 180.02562 * 4 3 2 6 6 C 1.38254 * 119.21842 * 0.02562 * 5 4 3 7 7 N 1.31852 * 120.89061 * 359.97438 * 6 5 4 8 8 C 1.31843 * 121.77691 * 0.02562 * 7 6 5 9 9 C 1.50695 * 119.65432 * 180.27543 * 8 7 6 10 10 C 1.50703 * 109.47128 * 269.72203 * 9 8 7 11 11 O 1.21276 * 119.99626 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99780 * 180.02562 * 10 9 8 13 13 C 1.46918 * 120.63232 * 355.06085 * 12 10 9 14 14 C 1.53196 * 108.77863 * 233.58914 * 13 12 10 15 15 C 1.53045 * 109.31040 * 305.36666 * 14 13 12 16 16 C 1.53039 * 109.53814 * 61.36497 * 15 14 13 17 17 C 1.46929 * 120.62630 * 174.78954 * 12 10 9 18 18 H 1.09000 * 109.58235 * 246.19820 * 17 12 10 19 19 C 1.52998 * 109.58762 * 6.62067 * 17 12 10 20 20 H 1.08998 * 109.47219 * 306.07403 * 19 17 12 21 21 C 1.52998 * 109.47179 * 186.07916 * 19 17 12 22 22 N 1.46498 * 109.47367 * 66.07717 * 19 17 12 23 23 C 1.36939 * 120.00180 * 205.00085 * 22 19 17 24 24 H 1.07996 * 120.00087 * 359.97438 * 23 22 19 25 25 C 1.38809 * 119.99853 * 179.97438 * 23 22 19 26 26 N 1.31621 * 119.99976 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 119.99944 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46783 * 60.00421 * 27 25 23 29 29 H 1.48507 * 109.47210 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47348 * 300.00247 * 27 25 23 31 31 H 1.08996 * 109.46558 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47318 * 300.00594 * 1 2 3 33 33 H 1.09007 * 109.46999 * 60.00708 * 1 2 3 34 34 H 1.08001 * 120.81257 * 0.04849 * 4 3 2 35 35 H 1.07996 * 120.39176 * 179.97438 * 5 4 3 36 36 H 1.08007 * 119.55503 * 180.02562 * 6 5 4 37 37 H 1.08996 * 109.47324 * 29.72790 * 9 8 7 38 38 H 1.09001 * 109.46856 * 149.72290 * 9 8 7 39 39 H 1.09005 * 109.58987 * 353.37762 * 13 12 10 40 40 H 1.09006 * 109.58524 * 113.80320 * 13 12 10 41 41 H 1.09000 * 109.49653 * 65.31700 * 14 13 12 42 42 H 1.09000 * 109.49839 * 185.41918 * 14 13 12 43 43 H 1.08995 * 109.45965 * 181.38539 * 15 14 13 44 44 H 1.08998 * 109.46162 * 301.34671 * 15 14 13 45 45 H 1.09000 * 109.50023 * 58.58113 * 16 15 14 46 46 H 1.09002 * 109.50143 * 178.65401 * 16 15 14 47 47 H 1.09002 * 109.47311 * 64.93552 * 21 19 17 48 48 H 1.09001 * 109.47756 * 184.94110 * 21 19 17 49 49 H 1.09002 * 109.47125 * 304.93953 * 21 19 17 50 50 H 0.97002 * 119.99744 * 24.99731 * 22 19 17 51 51 H 0.96997 * 119.99791 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2978 2.3841 -0.0006 5 6 1.9714 3.5947 -0.0011 6 6 3.3540 3.5977 -0.0016 7 7 4.0333 2.4677 -0.0010 8 6 3.4305 1.2951 -0.0005 9 6 4.2543 0.0333 0.0065 10 6 4.5293 -0.3949 -1.4120 11 8 4.0991 0.2604 -2.3374 12 7 5.2532 -1.5061 -1.6521 13 6 5.8717 -2.2501 -0.5464 14 6 7.3662 -2.4164 -0.8390 15 6 7.5436 -3.0685 -2.2122 16 6 6.9380 -2.1658 -3.2895 17 6 5.4340 -1.9998 -3.0241 18 1 4.9322 -2.9609 -3.1356 19 6 4.8447 -0.9924 -4.0135 20 1 3.8092 -0.7829 -3.7452 21 6 4.8972 -1.5754 -5.4271 22 7 5.6217 0.2487 -3.9679 23 6 5.0422 1.4333 -4.3365 24 1 4.0123 1.4527 -4.6612 25 6 5.7783 2.6093 -4.2928 26 7 7.0333 2.5858 -3.8966 27 14 4.9879 4.2252 -4.7963 28 1 3.8210 4.4997 -3.9198 29 1 5.9777 5.3240 -4.6604 30 1 4.5366 4.1368 -6.2082 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 0.2183 2.3518 -0.0003 35 1 1.4231 4.5251 -0.0020 36 1 3.8847 4.5384 -0.0015 37 1 5.1979 0.2182 0.5197 38 1 3.7074 -0.7547 0.5244 39 1 5.7408 -1.6976 0.3841 40 1 5.4049 -3.2313 -0.4600 41 1 7.8486 -1.4389 -0.8354 42 1 7.8184 -3.0487 -0.0749 43 1 8.6056 -3.2104 -2.4123 44 1 7.0398 -4.0350 -2.2230 45 1 7.4244 -1.1907 -3.2627 46 1 7.0858 -2.6194 -4.2695 47 1 4.2489 -2.4499 -5.4838 48 1 4.5593 -0.8255 -6.1423 49 1 5.9210 -1.8664 -5.6623 50 1 6.5468 0.2312 -3.6766 51 1 7.5478 3.4075 -3.8665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266002798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:23 Heat of formation + Delta-G solvation = 20.769120 kcal Electronic energy + Delta-G solvation = -33575.268558 eV Core-core repulsion = 29477.322394 eV Total energy + Delta-G solvation = -4097.946163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.61595 -39.76442 -37.93376 -36.68194 -35.16337 -32.76407 -32.24592 -31.96961 -31.08468 -29.49808 -28.10095 -27.89045 -27.32005 -24.63850 -23.75655 -23.09199 -22.65946 -22.12839 -20.55511 -19.73467 -18.27428 -17.89043 -16.92717 -16.80401 -16.28422 -15.98931 -15.63282 -15.18545 -14.75776 -14.42388 -14.22601 -14.03571 -13.88297 -13.74129 -13.47787 -13.45414 -13.26000 -12.84038 -12.66362 -12.46714 -12.14847 -12.10793 -11.99237 -11.81009 -11.39555 -11.33710 -11.25489 -11.21919 -10.97922 -10.67646 -10.55210 -10.53054 -10.40208 -10.23507 -9.97356 -9.64157 -9.46021 -9.22100 -9.18487 -8.54746 -8.16412 -7.96546 -7.70033 -6.41648 -5.35506 -2.55597 1.39144 1.55909 3.27050 3.53618 3.63981 3.66937 3.67976 3.69978 4.13662 4.60248 4.81625 4.85696 4.93384 5.01788 5.05176 5.09270 5.12376 5.18257 5.28908 5.36472 5.38496 5.50094 5.52875 5.61660 5.63038 5.71741 5.77472 5.82931 5.90442 5.95535 6.01059 6.06494 6.14270 6.20565 6.24841 6.28694 6.33379 6.39090 6.42502 6.55819 6.63724 6.67669 6.73097 7.03806 7.14780 7.20778 7.34456 7.55390 8.11286 8.19668 8.38455 8.83293 9.23248 9.95027 10.52654 10.89092 11.89394 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007976 B = 0.006146 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3509.596069 B = 4554.650524 C = 6561.913191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.085 3.915 4 C -0.167 4.167 5 C -0.140 4.140 6 C 0.071 3.929 7 N -0.423 5.423 8 C 0.140 3.860 9 C -0.083 4.083 10 C 0.501 3.499 11 O -0.441 6.441 12 N -0.614 5.614 13 C 0.113 3.887 14 C -0.136 4.136 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.149 3.851 18 H 0.059 0.941 19 C 0.171 3.829 20 H 0.079 0.921 21 C -0.171 4.171 22 N -0.699 5.699 23 C -0.169 4.169 24 H 0.059 0.941 25 C -0.026 4.026 26 N -0.946 5.946 27 Si 0.893 3.107 28 H -0.293 1.293 29 H -0.297 1.297 30 H -0.295 1.295 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.154 0.846 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.030 0.970 48 H 0.054 0.946 49 H 0.042 0.958 50 H 0.378 0.622 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 -10.619 12.356 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.038 3.962 4 C -0.194 4.194 5 C -0.160 4.160 6 C -0.086 4.086 7 N -0.131 5.131 8 C -0.001 4.001 9 C -0.123 4.123 10 C 0.286 3.714 11 O -0.310 6.310 12 N -0.352 5.352 13 C -0.010 4.010 14 C -0.174 4.174 15 C -0.153 4.153 16 C -0.172 4.172 17 C 0.045 3.955 18 H 0.077 0.923 19 C 0.061 3.939 20 H 0.096 0.904 21 C -0.232 4.232 22 N -0.340 5.340 23 C -0.301 4.301 24 H 0.077 0.923 25 C -0.219 4.219 26 N -0.598 5.598 27 Si 0.727 3.273 28 H -0.221 1.221 29 H -0.223 1.223 30 H -0.222 1.222 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.061 0.939 50 H 0.213 0.787 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.364 -10.224 11.792 17.707 hybrid contribution -1.173 1.215 -0.192 1.700 sum -9.537 -9.010 11.600 17.513 Atomic orbital electron populations 1.23033 0.78825 1.03819 1.01101 1.86084 1.20968 1.26222 1.88652 1.19797 0.93095 0.84840 0.98479 1.21529 1.00212 0.92247 1.05374 1.21900 0.95821 0.97987 1.00325 1.22571 0.91261 0.96493 0.98255 1.67508 1.39615 0.97374 1.08638 1.19985 0.87412 0.93575 0.99121 1.20476 1.00553 0.93767 0.97539 1.20045 0.80564 0.80492 0.90299 1.91009 1.47767 1.49619 1.42581 1.47819 1.53437 1.27415 1.06501 1.21565 0.93017 0.96274 0.90173 1.21918 0.96353 1.01770 0.97378 1.21486 1.00441 0.98376 0.94992 1.22068 0.96139 1.01010 0.97969 1.21615 0.95236 0.96905 0.81737 0.92343 1.20651 0.97854 0.85873 0.89493 0.90361 1.22616 0.99805 0.99206 1.01530 1.42361 1.11431 1.01471 1.78786 1.18935 0.94545 0.85273 1.31372 0.92326 1.24465 0.96247 0.96741 1.04423 1.69610 1.07824 1.25837 1.56521 0.86427 0.77860 0.85269 0.77770 1.22079 1.22292 1.22242 0.88287 0.92991 0.92673 0.84830 0.84986 0.82854 0.88144 0.88342 0.90423 0.92376 0.91099 0.91621 0.92303 0.92570 0.90119 0.91375 0.95091 0.92702 0.93881 0.78668 0.94405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.83 101.05 0.99 1.26 16 2 O -0.31 -4.42 9.55 -19.46 -0.19 -4.61 16 3 C 0.09 1.40 6.67 -39.07 -0.26 1.14 16 4 C -0.17 -2.42 9.14 -39.14 -0.36 -2.77 16 5 C -0.14 -2.08 10.11 -39.47 -0.40 -2.47 16 6 C 0.07 1.25 11.18 -17.54 -0.20 1.05 16 7 N -0.42 -8.57 10.27 -9.35 -0.10 -8.67 16 8 C 0.14 2.60 5.29 -82.41 -0.44 2.17 16 9 C -0.08 -1.38 4.17 -29.04 -0.12 -1.50 16 10 C 0.50 9.93 7.38 -10.98 -0.08 9.85 16 11 O -0.44 -10.74 8.78 5.56 0.05 -10.69 16 12 N -0.61 -10.39 2.96 -164.96 -0.49 -10.88 16 13 C 0.11 1.43 6.33 -3.71 -0.02 1.41 16 14 C -0.14 -1.68 6.08 -26.61 -0.16 -1.85 16 15 C -0.12 -1.48 5.88 -26.69 -0.16 -1.64 16 16 C -0.13 -2.19 4.89 -26.39 -0.13 -2.32 16 17 C 0.15 2.59 2.73 -67.37 -0.18 2.41 16 18 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 19 C 0.17 3.68 1.88 -67.93 -0.13 3.55 16 20 H 0.08 1.88 5.90 -52.20 -0.31 1.57 16 21 C -0.17 -3.33 9.39 37.16 0.35 -2.98 16 22 N -0.70 -18.27 3.62 -53.43 -0.19 -18.46 16 23 C -0.17 -5.04 7.98 -15.06 -0.12 -5.16 16 24 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 25 C -0.03 -0.80 5.50 -17.43 -0.10 -0.89 16 26 N -0.95 -30.45 13.06 55.49 0.72 -29.72 16 27 Si 0.89 24.74 29.55 -169.99 -5.02 19.72 16 28 H -0.29 -8.12 7.11 56.52 0.40 -7.72 16 29 H -0.30 -8.24 7.11 56.52 0.40 -7.84 16 30 H -0.29 -8.04 7.11 56.52 0.40 -7.64 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.41 7.70 -51.93 -0.40 0.01 16 33 H 0.05 0.53 7.70 -51.92 -0.40 0.13 16 34 H 0.13 1.48 6.45 -52.49 -0.34 1.14 16 35 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.15 2.39 8.06 -52.48 -0.42 1.97 16 37 H 0.10 1.60 7.48 -51.93 -0.39 1.21 16 38 H 0.10 1.35 7.49 -51.93 -0.39 0.97 16 39 H 0.08 0.88 5.96 -51.93 -0.31 0.57 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.63 6.05 -51.93 -0.31 1.32 16 46 H 0.07 1.07 6.82 -51.93 -0.35 0.72 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.04 0.80 6.57 -51.93 -0.34 0.46 16 50 H 0.38 10.54 5.60 -40.82 -0.23 10.31 16 51 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 392.80 15.07 5.92 5.92 Total: -1.00 -37.05 392.80 -8.77 -45.83 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -7.97 Total: 10.30 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.51 Total: 1.27 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -0.05 Total: -67.73 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.14 Total: -15.30 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.02 Total: 19.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.05 -8.77 -45.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266002798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.594 kcal (2) G-P(sol) polarization free energy of solvation -37.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds