Wall clock time and date at job start Wed Apr 1 2020 04:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35911 * 116.99777 * 2 1 4 4 C 1.39140 * 120.47511 * 359.97025 * 3 2 1 5 5 C 1.38536 * 118.37831 * 180.02562 * 4 3 2 6 6 C 1.38254 * 119.21842 * 0.02562 * 5 4 3 7 7 N 1.31852 * 120.89061 * 359.97438 * 6 5 4 8 8 C 1.31843 * 121.77691 * 0.02562 * 7 6 5 9 9 C 1.50695 * 119.65432 * 180.27543 * 8 7 6 10 10 C 1.50703 * 109.47128 * 269.72203 * 9 8 7 11 11 O 1.21276 * 119.99626 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99780 * 180.02562 * 10 9 8 13 13 C 1.46918 * 120.63232 * 355.06085 * 12 10 9 14 14 C 1.53196 * 108.77863 * 233.58914 * 13 12 10 15 15 C 1.53045 * 109.31040 * 305.36666 * 14 13 12 16 16 C 1.53039 * 109.53814 * 61.36497 * 15 14 13 17 17 C 1.46929 * 120.62630 * 174.78954 * 12 10 9 18 18 H 1.09000 * 109.58235 * 246.19820 * 17 12 10 19 19 C 1.52998 * 109.58762 * 6.62067 * 17 12 10 20 20 H 1.08998 * 109.47219 * 306.07403 * 19 17 12 21 21 C 1.52998 * 109.47179 * 186.07916 * 19 17 12 22 22 N 1.46498 * 109.47367 * 66.07717 * 19 17 12 23 23 C 1.36939 * 120.00180 * 205.00085 * 22 19 17 24 24 H 1.07996 * 120.00087 * 359.97438 * 23 22 19 25 25 C 1.38809 * 119.99853 * 179.97438 * 23 22 19 26 26 N 1.31621 * 119.99976 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 119.99944 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46783 * 60.00421 * 27 25 23 29 29 H 1.48507 * 109.47210 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47348 * 300.00247 * 27 25 23 31 31 H 1.08996 * 109.46558 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47318 * 300.00594 * 1 2 3 33 33 H 1.09007 * 109.46999 * 60.00708 * 1 2 3 34 34 H 1.08001 * 120.81257 * 0.04849 * 4 3 2 35 35 H 1.07996 * 120.39176 * 179.97438 * 5 4 3 36 36 H 1.08007 * 119.55503 * 180.02562 * 6 5 4 37 37 H 1.08996 * 109.47324 * 29.72790 * 9 8 7 38 38 H 1.09001 * 109.46856 * 149.72290 * 9 8 7 39 39 H 1.09005 * 109.58987 * 353.37762 * 13 12 10 40 40 H 1.09006 * 109.58524 * 113.80320 * 13 12 10 41 41 H 1.09000 * 109.49653 * 65.31700 * 14 13 12 42 42 H 1.09000 * 109.49839 * 185.41918 * 14 13 12 43 43 H 1.08995 * 109.45965 * 181.38539 * 15 14 13 44 44 H 1.08998 * 109.46162 * 301.34671 * 15 14 13 45 45 H 1.09000 * 109.50023 * 58.58113 * 16 15 14 46 46 H 1.09002 * 109.50143 * 178.65401 * 16 15 14 47 47 H 1.09002 * 109.47311 * 64.93552 * 21 19 17 48 48 H 1.09001 * 109.47756 * 184.94110 * 21 19 17 49 49 H 1.09002 * 109.47125 * 304.93953 * 21 19 17 50 50 H 0.97002 * 119.99744 * 24.99731 * 22 19 17 51 51 H 0.96997 * 119.99791 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2978 2.3841 -0.0006 5 6 1.9714 3.5947 -0.0011 6 6 3.3540 3.5977 -0.0016 7 7 4.0333 2.4677 -0.0010 8 6 3.4305 1.2951 -0.0005 9 6 4.2543 0.0333 0.0065 10 6 4.5293 -0.3949 -1.4120 11 8 4.0991 0.2604 -2.3374 12 7 5.2532 -1.5061 -1.6521 13 6 5.8717 -2.2501 -0.5464 14 6 7.3662 -2.4164 -0.8390 15 6 7.5436 -3.0685 -2.2122 16 6 6.9380 -2.1658 -3.2895 17 6 5.4340 -1.9998 -3.0241 18 1 4.9322 -2.9609 -3.1356 19 6 4.8447 -0.9924 -4.0135 20 1 3.8092 -0.7829 -3.7452 21 6 4.8972 -1.5754 -5.4271 22 7 5.6217 0.2487 -3.9679 23 6 5.0422 1.4333 -4.3365 24 1 4.0123 1.4527 -4.6612 25 6 5.7783 2.6093 -4.2928 26 7 7.0333 2.5858 -3.8966 27 14 4.9879 4.2252 -4.7963 28 1 3.8210 4.4997 -3.9198 29 1 5.9777 5.3240 -4.6604 30 1 4.5366 4.1368 -6.2082 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 0.2183 2.3518 -0.0003 35 1 1.4231 4.5251 -0.0020 36 1 3.8847 4.5384 -0.0015 37 1 5.1979 0.2182 0.5197 38 1 3.7074 -0.7547 0.5244 39 1 5.7408 -1.6976 0.3841 40 1 5.4049 -3.2313 -0.4600 41 1 7.8486 -1.4389 -0.8354 42 1 7.8184 -3.0487 -0.0749 43 1 8.6056 -3.2104 -2.4123 44 1 7.0398 -4.0350 -2.2230 45 1 7.4244 -1.1907 -3.2627 46 1 7.0858 -2.6194 -4.2695 47 1 4.2489 -2.4499 -5.4838 48 1 4.5593 -0.8255 -6.1423 49 1 5.9210 -1.8664 -5.6623 50 1 6.5468 0.2312 -3.6766 51 1 7.5478 3.4075 -3.8665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266002798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:22 Heat of formation + Delta-G solvation = -4.802928 kcal Electronic energy + Delta-G solvation = -33576.377445 eV Core-core repulsion = 29477.322394 eV Total energy + Delta-G solvation = -4099.055051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.86070 -41.11508 -39.04930 -38.08151 -36.86575 -34.30072 -33.78375 -33.49679 -32.30924 -31.19154 -29.67658 -29.24268 -28.26795 -26.05862 -25.56419 -24.62042 -23.82965 -23.44873 -21.79771 -21.28308 -19.65672 -19.05481 -18.90380 -18.11280 -17.65768 -17.24319 -16.76429 -16.56013 -16.27516 -16.08321 -15.63474 -15.47786 -15.29925 -14.92601 -14.85808 -14.78320 -14.58112 -14.19685 -14.01249 -13.89076 -13.71264 -13.58777 -13.26412 -13.09332 -13.00860 -12.81605 -12.67329 -12.62036 -12.31083 -12.29623 -12.26563 -12.16150 -11.87446 -11.66533 -11.48896 -11.32280 -11.17798 -10.75780 -10.68283 -10.45891 -9.62108 -9.28055 -9.17515 -8.54390 -7.72488 -4.88834 0.16722 0.34814 1.36992 1.41567 1.46381 2.12220 2.27208 2.32635 2.67404 2.88178 3.40672 3.61465 3.67763 3.79174 3.82691 4.00620 4.02718 4.09118 4.14742 4.24115 4.32101 4.35181 4.37483 4.38961 4.42479 4.47326 4.48437 4.56782 4.67981 4.70859 4.76129 4.83313 4.89869 4.94468 4.99794 5.03940 5.07019 5.13164 5.15045 5.20145 5.30211 5.36063 5.49159 5.51851 5.60148 5.63087 5.69597 6.05824 6.27301 6.50487 6.82500 7.12106 7.56201 7.78689 8.37826 8.61348 9.52820 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007976 B = 0.006146 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3509.596069 B = 4554.650524 C = 6561.913191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.319 6.319 3 C 0.084 3.916 4 C -0.168 4.168 5 C -0.133 4.133 6 C 0.037 3.963 7 N -0.469 5.469 8 C 0.106 3.894 9 C -0.073 4.073 10 C 0.493 3.507 11 O -0.500 6.500 12 N -0.614 5.614 13 C 0.107 3.893 14 C -0.133 4.133 15 C -0.108 4.108 16 C -0.128 4.128 17 C 0.152 3.848 18 H 0.092 0.908 19 C 0.167 3.833 20 H 0.054 0.946 21 C -0.161 4.161 22 N -0.699 5.699 23 C -0.147 4.147 24 H 0.044 0.956 25 C -0.089 4.089 26 N -0.978 5.978 27 Si 0.946 3.054 28 H -0.296 1.296 29 H -0.298 1.298 30 H -0.287 1.287 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.172 0.828 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.036 0.964 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.032 0.968 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.025 0.975 49 H 0.048 0.952 50 H 0.367 0.633 51 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.854 -13.379 13.568 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.232 6.232 3 C 0.036 3.964 4 C -0.194 4.194 5 C -0.152 4.152 6 C -0.119 4.119 7 N -0.179 5.179 8 C -0.034 4.034 9 C -0.113 4.113 10 C 0.279 3.721 11 O -0.373 6.373 12 N -0.350 5.350 13 C -0.015 4.015 14 C -0.171 4.171 15 C -0.146 4.146 16 C -0.166 4.166 17 C 0.048 3.952 18 H 0.110 0.890 19 C 0.058 3.942 20 H 0.072 0.928 21 C -0.221 4.221 22 N -0.340 5.340 23 C -0.281 4.281 24 H 0.062 0.938 25 C -0.279 4.279 26 N -0.633 5.633 27 Si 0.779 3.221 28 H -0.224 1.224 29 H -0.225 1.225 30 H -0.214 1.214 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.189 0.811 35 H 0.186 0.814 36 H 0.176 0.824 37 H 0.118 0.882 38 H 0.146 0.854 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.055 0.945 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.051 0.949 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.045 0.955 49 H 0.067 0.933 50 H 0.201 0.799 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.282 -13.064 13.016 21.114 hybrid contribution -0.717 1.930 -0.538 2.128 sum -10.999 -11.133 12.478 20.016 Atomic orbital electron populations 1.23394 0.76300 1.05904 1.02135 1.86055 1.23526 1.25331 1.88274 1.19854 0.92758 0.86233 0.97603 1.21993 1.02033 0.91374 1.03997 1.22271 0.94799 0.99836 0.98336 1.22889 0.93006 0.96230 0.99790 1.67405 1.41545 0.98704 1.10224 1.20246 0.88983 0.93504 1.00714 1.20440 1.00867 0.94240 0.95770 1.20624 0.79970 0.80528 0.90993 1.90968 1.50382 1.51583 1.44341 1.47956 1.52622 1.26936 1.07477 1.21924 0.93047 0.97498 0.89054 1.21914 0.96094 1.00706 0.98399 1.21468 1.01003 0.98570 0.93552 1.21981 0.95161 0.99460 1.00020 1.21552 0.95877 0.96589 0.81165 0.89029 1.20746 0.96295 0.85299 0.91815 0.92805 1.22443 1.00917 0.99608 0.99134 1.42428 1.11102 1.02183 1.78241 1.19015 0.93482 0.86772 1.28795 0.93831 1.25036 0.96970 0.99438 1.06443 1.69762 1.08912 1.25680 1.58980 0.85551 0.76797 0.82154 0.77580 1.22352 1.22490 1.21416 0.85837 0.90706 0.92746 0.81104 0.81384 0.82418 0.88185 0.85387 0.89262 0.88840 0.94534 0.87953 0.91499 0.89581 0.94881 0.90720 0.91416 0.95534 0.93265 0.79897 0.95369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.83 113.37 1.11 1.39 16 2 O -0.32 -8.67 9.55 -92.55 -0.88 -9.55 16 3 C 0.08 2.69 6.67 22.60 0.15 2.84 16 4 C -0.17 -4.58 9.14 22.56 0.21 -4.37 16 5 C -0.13 -3.81 10.11 22.34 0.23 -3.58 16 6 C 0.04 1.36 11.18 84.69 0.95 2.31 16 7 N -0.47 -19.96 10.27 -183.50 -1.88 -21.85 16 8 C 0.11 4.02 5.29 42.67 0.23 4.25 16 9 C -0.07 -2.45 4.17 29.10 0.12 -2.33 16 10 C 0.49 19.78 7.38 87.66 0.65 20.43 16 11 O -0.50 -25.23 8.78 -3.02 -0.03 -25.26 16 12 N -0.61 -20.12 2.96 -794.22 -2.35 -22.47 16 13 C 0.11 2.39 6.33 86.37 0.55 2.93 16 14 C -0.13 -2.96 6.08 30.67 0.19 -2.77 16 15 C -0.11 -2.46 5.88 30.62 0.18 -2.28 16 16 C -0.13 -4.06 4.89 30.82 0.15 -3.91 16 17 C 0.15 5.08 2.73 45.12 0.12 5.21 16 18 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 19 C 0.17 7.24 1.88 44.99 0.08 7.33 16 20 H 0.05 2.65 5.90 -6.60 -0.04 2.61 16 21 C -0.16 -6.17 9.39 71.98 0.68 -5.49 16 22 N -0.70 -38.06 3.62 -322.96 -1.17 -39.23 16 23 C -0.15 -9.14 7.98 84.03 0.67 -8.47 16 24 H 0.04 2.79 7.83 -2.91 -0.02 2.77 16 25 C -0.09 -5.75 5.50 84.86 0.47 -5.29 16 26 N -0.98 -65.88 13.06 21.65 0.28 -65.60 16 27 Si 0.95 52.90 29.55 68.60 2.03 54.93 16 28 H -0.30 -16.44 7.11 99.48 0.71 -15.73 16 29 H -0.30 -16.62 7.11 99.48 0.71 -15.91 16 30 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 31 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 0.90 7.70 -2.39 -0.02 0.89 16 33 H 0.05 0.92 7.70 -2.38 -0.02 0.90 16 34 H 0.17 3.21 6.45 -2.91 -0.02 3.19 16 35 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.16 5.22 8.06 -2.91 -0.02 5.19 16 37 H 0.10 3.27 7.48 -2.39 -0.02 3.26 16 38 H 0.13 3.36 7.49 -2.39 -0.02 3.34 16 39 H 0.09 1.80 5.96 -2.38 -0.01 1.79 16 40 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.03 1.38 6.05 -2.39 -0.01 1.36 16 46 H 0.07 2.23 6.82 -2.39 -0.02 2.22 16 47 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.05 1.80 6.57 -2.39 -0.02 1.79 16 50 H 0.37 21.54 5.60 -92.71 -0.52 21.02 16 51 H 0.24 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -87.50 392.80 3.11 -84.39 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: 0.40 Total: 36.44 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 6.72 Total: 8.20 kcal Atomic # 7 Polarization: -144.02 SS G_CDS: -5.13 Total: -149.15 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.91 Total: -34.81 kcal Atomic # 14 Polarization: 52.90 SS G_CDS: 2.03 Total: 54.93 kcal Total: -87.50 3.11 -84.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266002798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.584 kcal (2) G-P(sol) polarization free energy of solvation -87.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds