Wall clock time and date at job start Wed Apr 1 2020 04:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35910 * 117.00033 * 2 1 4 4 C 1.39133 * 120.47655 * 359.97438 * 3 2 1 5 5 C 1.38534 * 118.38191 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.21771 * 359.97438 * 5 4 3 7 7 N 1.31848 * 120.88418 * 359.74616 * 6 5 4 8 8 C 1.31835 * 121.78403 * 0.52350 * 7 6 5 9 9 C 1.50703 * 119.66169 * 179.75374 * 8 7 6 10 10 C 1.50694 * 109.47147 * 269.72712 * 9 8 7 11 11 O 1.21284 * 120.00217 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00289 * 180.02562 * 10 9 8 13 13 C 1.46929 * 120.62523 * 354.29948 * 12 10 9 14 14 C 1.53192 * 108.77172 * 233.58658 * 13 12 10 15 15 C 1.53038 * 109.31183 * 305.36528 * 14 13 12 16 16 C 1.53035 * 109.53772 * 61.37110 * 15 14 13 17 17 C 1.46922 * 120.63352 * 174.02328 * 12 10 9 18 18 H 1.08997 * 109.58670 * 246.20383 * 17 12 10 19 19 C 1.53003 * 109.58720 * 6.62239 * 17 12 10 20 20 H 1.09007 * 109.46663 * 52.57829 * 19 17 12 21 21 C 1.52993 * 109.47103 * 172.57987 * 19 17 12 22 22 N 1.46503 * 109.47285 * 292.58078 * 19 17 12 23 23 C 1.36933 * 120.00086 * 165.85124 * 22 19 17 24 24 H 1.08006 * 119.99951 * 359.97438 * 23 22 19 25 25 C 1.38805 * 120.00183 * 179.97438 * 23 22 19 26 26 N 1.31627 * 119.99917 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00370 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46665 * 60.00080 * 27 25 23 29 29 H 1.48496 * 109.47442 * 179.97438 * 27 25 23 30 30 H 1.48492 * 109.47139 * 300.00253 * 27 25 23 31 31 H 1.09000 * 109.46720 * 60.00468 * 1 2 3 32 32 H 1.09005 * 109.47008 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47567 * 300.00226 * 1 2 3 34 34 H 1.08013 * 120.80928 * 0.04268 * 4 3 2 35 35 H 1.07999 * 120.39291 * 179.97438 * 5 4 3 36 36 H 1.07997 * 119.55797 * 180.02562 * 6 5 4 37 37 H 1.08999 * 109.47049 * 149.72673 * 9 8 7 38 38 H 1.09005 * 109.46956 * 29.72791 * 9 8 7 39 39 H 1.08996 * 109.58781 * 353.37390 * 13 12 10 40 40 H 1.08993 * 109.58326 * 113.79903 * 13 12 10 41 41 H 1.09000 * 109.49688 * 65.31914 * 14 13 12 42 42 H 1.09004 * 109.49580 * 185.41527 * 14 13 12 43 43 H 1.09003 * 109.45493 * 181.38704 * 15 14 13 44 44 H 1.08998 * 109.46557 * 301.34509 * 15 14 13 45 45 H 1.08997 * 109.50087 * 58.58396 * 16 15 14 46 46 H 1.09001 * 109.49952 * 178.68315 * 16 15 14 47 47 H 1.09004 * 109.47457 * 174.39551 * 21 19 17 48 48 H 1.09000 * 109.47103 * 294.38614 * 21 19 17 49 49 H 1.08994 * 109.47470 * 54.39130 * 21 19 17 50 50 H 0.96999 * 119.99439 * 345.85368 * 22 19 17 51 51 H 0.96997 * 119.99823 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3841 -0.0005 5 6 1.9716 3.5946 -0.0011 6 6 3.3542 3.5976 -0.0005 7 7 4.0334 2.4675 0.0055 8 6 3.4306 1.2951 0.0010 9 6 4.2543 0.0330 0.0027 10 6 4.5294 -0.3891 -1.4175 11 8 4.0987 0.2697 -2.3403 12 7 5.2534 -1.4993 -1.6624 13 6 5.8855 -2.2387 -0.5613 14 6 7.3771 -2.4024 -0.8697 15 6 7.5410 -3.0580 -2.2427 16 6 6.9218 -2.1599 -3.3159 17 6 5.4204 -1.9965 -3.0348 18 1 4.9196 -2.9591 -3.1382 19 6 4.8180 -0.9934 -4.0207 20 1 5.2317 -0.0031 -3.8296 21 6 5.1544 -1.4193 -5.4511 22 7 3.3633 -0.9559 -3.8516 23 6 2.6353 0.0616 -4.4084 24 1 3.1337 0.8367 -4.9717 25 6 1.2569 0.0969 -4.2487 26 7 0.6495 -0.8480 -3.5625 27 14 0.2639 1.4853 -5.0075 28 1 0.4545 1.4825 -6.4803 29 1 -1.1750 1.2931 -4.6948 30 1 0.7228 2.7834 -4.4514 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 0.2183 2.3518 -0.0003 35 1 1.4233 4.5251 -0.0019 36 1 3.8849 4.5382 -0.0005 37 1 3.7073 -0.7571 0.5171 38 1 5.1979 0.2157 0.5168 39 1 5.7634 -1.6839 0.3689 40 1 5.4219 -3.2206 -0.4670 41 1 7.8572 -1.4239 -0.8740 42 1 7.8390 -3.0315 -0.1086 43 1 8.6012 -3.1981 -2.4539 44 1 7.0395 -4.0258 -2.2454 45 1 7.4062 -1.1836 -3.2973 46 1 7.0595 -2.6162 -4.2962 47 1 4.6434 -0.7629 -6.1554 48 1 6.2311 -1.3513 -5.6068 49 1 4.8285 -2.4472 -5.6103 50 1 2.9158 -1.6518 -3.3453 51 1 -0.3138 -0.8235 -3.4513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266002800.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:30 Heat of formation + Delta-G solvation = 21.107582 kcal Electronic energy + Delta-G solvation = -33814.123140 eV Core-core repulsion = 29716.191654 eV Total energy + Delta-G solvation = -4097.931487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.44414 -39.69297 -37.59991 -36.68103 -35.20528 -32.70833 -32.28050 -32.07632 -30.90830 -29.75945 -28.00581 -27.61036 -26.94816 -24.66145 -24.11467 -22.69240 -22.44223 -22.05739 -20.42826 -19.85823 -18.62380 -17.59408 -16.72906 -16.68844 -16.18184 -15.91029 -15.24388 -15.13779 -14.79783 -14.48071 -14.22034 -14.00018 -13.71599 -13.61633 -13.45255 -13.30956 -13.04799 -12.91293 -12.73919 -12.38529 -12.32087 -12.03474 -11.85810 -11.81118 -11.37961 -11.24692 -11.06366 -10.93740 -10.91045 -10.75677 -10.75518 -10.61906 -10.52667 -10.32121 -10.09217 -9.61662 -9.35101 -9.31199 -9.19812 -8.57654 -8.08348 -7.80500 -7.78254 -6.35148 -5.41827 -2.60552 1.51155 1.73519 3.56062 3.57844 3.58731 3.63396 3.69345 3.74067 4.22944 4.68500 4.83045 4.91287 4.99253 5.03350 5.06107 5.10658 5.31098 5.34740 5.41754 5.48474 5.55789 5.61251 5.65696 5.70408 5.72990 5.75963 5.85769 5.87943 5.92461 5.98988 6.01276 6.06848 6.11134 6.17636 6.20264 6.24789 6.25902 6.42257 6.47367 6.48403 6.54914 6.59882 6.84048 6.90477 7.08181 7.18778 7.52854 7.69818 8.00583 8.22333 8.39928 8.74120 9.28554 9.86557 10.44562 10.80856 11.81357 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009135 B = 0.005930 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.464912 B = 4720.223644 C = 6485.098923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.289 6.289 3 C 0.118 3.882 4 C -0.169 4.169 5 C -0.136 4.136 6 C 0.050 3.950 7 N -0.442 5.442 8 C 0.128 3.872 9 C -0.077 4.077 10 C 0.483 3.517 11 O -0.425 6.425 12 N -0.620 5.620 13 C 0.113 3.887 14 C -0.134 4.134 15 C -0.117 4.117 16 C -0.128 4.128 17 C 0.151 3.849 18 H 0.062 0.938 19 C 0.182 3.818 20 H 0.061 0.939 21 C -0.168 4.168 22 N -0.689 5.689 23 C -0.172 4.172 24 H 0.058 0.942 25 C -0.022 4.022 26 N -0.937 5.937 27 Si 0.885 3.115 28 H -0.292 1.292 29 H -0.297 1.297 30 H -0.294 1.294 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.040 0.960 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.151 0.849 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.035 0.965 49 H 0.041 0.959 50 H 0.377 0.623 51 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.796 -1.384 11.415 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.200 6.200 3 C 0.069 3.931 4 C -0.196 4.196 5 C -0.156 4.156 6 C -0.106 4.106 7 N -0.151 5.151 8 C -0.013 4.013 9 C -0.118 4.118 10 C 0.267 3.733 11 O -0.291 6.291 12 N -0.358 5.358 13 C -0.011 4.011 14 C -0.172 4.172 15 C -0.155 4.155 16 C -0.167 4.167 17 C 0.047 3.953 18 H 0.080 0.920 19 C 0.072 3.928 20 H 0.079 0.921 21 C -0.228 4.228 22 N -0.329 5.329 23 C -0.305 4.305 24 H 0.076 0.924 25 C -0.216 4.216 26 N -0.589 5.589 27 Si 0.719 3.281 28 H -0.220 1.220 29 H -0.223 1.223 30 H -0.221 1.221 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.059 0.941 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.168 0.832 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.211 0.789 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.415 -0.968 10.808 14.366 hybrid contribution -2.131 0.712 -0.311 2.268 sum 7.284 -0.256 10.497 12.779 Atomic orbital electron populations 1.22949 0.78278 1.04053 1.00271 1.86119 1.21424 1.25219 1.87219 1.19782 0.93045 0.85385 0.94889 1.21597 1.00558 0.92363 1.05044 1.21840 0.95763 0.97912 1.00085 1.22362 0.91305 0.96066 1.00901 1.67349 1.40028 0.97525 1.10237 1.19860 0.87836 0.93149 1.00420 1.20398 0.99910 0.94042 0.97410 1.20078 0.80070 0.82680 0.90490 1.91160 1.45309 1.50068 1.42525 1.47806 1.54004 1.27637 1.06387 1.21549 0.92376 0.96861 0.90321 1.21917 0.96656 1.01238 0.97422 1.21498 1.00258 0.98872 0.94872 1.22064 0.95953 1.00114 0.98542 1.21520 0.94169 0.97896 0.81711 0.92023 1.20427 0.86921 0.95928 0.89538 0.92143 1.22555 0.98317 1.00957 1.01016 1.42262 0.99570 1.28425 1.62624 1.18907 0.88515 1.00929 1.22104 0.92420 1.24413 0.96360 0.98366 1.02417 1.69666 1.07474 1.34516 1.47250 0.86552 0.79465 0.83139 0.78977 1.22000 1.22318 1.22129 0.92104 0.88268 0.94123 0.84891 0.85276 0.83189 0.88386 0.88764 0.90358 0.92231 0.91655 0.91475 0.92313 0.92069 0.91709 0.90980 0.92644 0.94626 0.94018 0.78925 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 9.83 101.05 0.99 1.65 16 2 O -0.29 -5.69 9.55 -19.46 -0.19 -5.87 16 3 C 0.12 2.30 6.67 -39.07 -0.26 2.04 16 4 C -0.17 -2.97 9.14 -39.14 -0.36 -3.32 16 5 C -0.14 -2.14 10.11 -39.47 -0.40 -2.54 16 6 C 0.05 0.82 11.18 -17.54 -0.20 0.63 16 7 N -0.44 -8.28 10.27 -9.35 -0.10 -8.37 16 8 C 0.13 2.46 5.29 -82.41 -0.44 2.03 16 9 C -0.08 -1.31 4.19 -29.04 -0.12 -1.43 16 10 C 0.48 9.59 7.34 -10.99 -0.08 9.51 16 11 O -0.42 -10.41 8.87 5.55 0.05 -10.37 16 12 N -0.62 -10.32 2.97 -164.97 -0.49 -10.81 16 13 C 0.11 1.38 6.32 -3.71 -0.02 1.36 16 14 C -0.13 -1.40 6.08 -26.61 -0.16 -1.56 16 15 C -0.12 -1.28 5.88 -26.69 -0.16 -1.44 16 16 C -0.13 -1.74 4.67 -26.39 -0.12 -1.86 16 17 C 0.15 2.59 2.58 -67.38 -0.17 2.42 16 18 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 19 C 0.18 3.86 1.78 -67.93 -0.12 3.74 16 20 H 0.06 1.45 6.47 -51.93 -0.34 1.12 16 21 C -0.17 -3.24 8.68 37.15 0.32 -2.92 16 22 N -0.69 -17.76 3.06 -53.42 -0.16 -17.92 16 23 C -0.17 -4.99 8.10 -15.06 -0.12 -5.12 16 24 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 25 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 26 N -0.94 -28.00 13.06 55.49 0.72 -27.28 16 27 Si 0.88 23.72 29.55 -169.99 -5.02 18.70 16 28 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 29 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 30 H -0.29 -7.99 7.11 56.52 0.40 -7.59 16 31 H 0.06 1.14 7.70 -51.93 -0.40 0.74 16 32 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.04 0.53 7.70 -51.93 -0.40 0.13 16 34 H 0.13 2.06 6.45 -52.48 -0.34 1.72 16 35 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 37 H 0.10 1.56 7.50 -51.93 -0.39 1.17 16 38 H 0.09 1.36 7.45 -51.93 -0.39 0.98 16 39 H 0.08 0.85 5.96 -51.93 -0.31 0.54 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.07 0.93 6.83 -51.93 -0.35 0.57 16 47 H 0.05 1.18 7.88 -51.93 -0.41 0.77 16 48 H 0.03 0.57 6.82 -51.93 -0.35 0.22 16 49 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.38 10.50 7.70 -40.82 -0.31 10.19 16 51 H 0.24 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -34.46 395.97 -8.92 -43.38 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -8.19 Total: 10.15 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.51 Total: 2.43 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.02 Total: -64.38 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.14 Total: -16.24 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -5.02 Total: 18.70 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.46 -8.92 -43.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266002800.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.483 kcal (2) G-P(sol) polarization free energy of solvation -34.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds