Wall clock time and date at job start Wed Apr 1 2020 04:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35910 * 117.00033 * 2 1 4 4 C 1.39133 * 120.47655 * 359.97438 * 3 2 1 5 5 C 1.38534 * 118.38191 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.21771 * 359.97438 * 5 4 3 7 7 N 1.31848 * 120.88418 * 359.74616 * 6 5 4 8 8 C 1.31835 * 121.78403 * 0.52350 * 7 6 5 9 9 C 1.50703 * 119.66169 * 179.75374 * 8 7 6 10 10 C 1.50694 * 109.47147 * 269.72712 * 9 8 7 11 11 O 1.21284 * 120.00217 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00289 * 180.02562 * 10 9 8 13 13 C 1.46929 * 120.62523 * 354.29948 * 12 10 9 14 14 C 1.53192 * 108.77172 * 233.58658 * 13 12 10 15 15 C 1.53038 * 109.31183 * 305.36528 * 14 13 12 16 16 C 1.53035 * 109.53772 * 61.37110 * 15 14 13 17 17 C 1.46922 * 120.63352 * 174.02328 * 12 10 9 18 18 H 1.08997 * 109.58670 * 246.20383 * 17 12 10 19 19 C 1.53003 * 109.58720 * 6.62239 * 17 12 10 20 20 H 1.09007 * 109.46663 * 52.57829 * 19 17 12 21 21 C 1.52993 * 109.47103 * 172.57987 * 19 17 12 22 22 N 1.46503 * 109.47285 * 292.58078 * 19 17 12 23 23 C 1.36933 * 120.00086 * 165.85124 * 22 19 17 24 24 H 1.08006 * 119.99951 * 359.97438 * 23 22 19 25 25 C 1.38805 * 120.00183 * 179.97438 * 23 22 19 26 26 N 1.31627 * 119.99917 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00370 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46665 * 60.00080 * 27 25 23 29 29 H 1.48496 * 109.47442 * 179.97438 * 27 25 23 30 30 H 1.48492 * 109.47139 * 300.00253 * 27 25 23 31 31 H 1.09000 * 109.46720 * 60.00468 * 1 2 3 32 32 H 1.09005 * 109.47008 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47567 * 300.00226 * 1 2 3 34 34 H 1.08013 * 120.80928 * 0.04268 * 4 3 2 35 35 H 1.07999 * 120.39291 * 179.97438 * 5 4 3 36 36 H 1.07997 * 119.55797 * 180.02562 * 6 5 4 37 37 H 1.08999 * 109.47049 * 149.72673 * 9 8 7 38 38 H 1.09005 * 109.46956 * 29.72791 * 9 8 7 39 39 H 1.08996 * 109.58781 * 353.37390 * 13 12 10 40 40 H 1.08993 * 109.58326 * 113.79903 * 13 12 10 41 41 H 1.09000 * 109.49688 * 65.31914 * 14 13 12 42 42 H 1.09004 * 109.49580 * 185.41527 * 14 13 12 43 43 H 1.09003 * 109.45493 * 181.38704 * 15 14 13 44 44 H 1.08998 * 109.46557 * 301.34509 * 15 14 13 45 45 H 1.08997 * 109.50087 * 58.58396 * 16 15 14 46 46 H 1.09001 * 109.49952 * 178.68315 * 16 15 14 47 47 H 1.09004 * 109.47457 * 174.39551 * 21 19 17 48 48 H 1.09000 * 109.47103 * 294.38614 * 21 19 17 49 49 H 1.08994 * 109.47470 * 54.39130 * 21 19 17 50 50 H 0.96999 * 119.99439 * 345.85368 * 22 19 17 51 51 H 0.96997 * 119.99823 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3841 -0.0005 5 6 1.9716 3.5946 -0.0011 6 6 3.3542 3.5976 -0.0005 7 7 4.0334 2.4675 0.0055 8 6 3.4306 1.2951 0.0010 9 6 4.2543 0.0330 0.0027 10 6 4.5294 -0.3891 -1.4175 11 8 4.0987 0.2697 -2.3403 12 7 5.2534 -1.4993 -1.6624 13 6 5.8855 -2.2387 -0.5613 14 6 7.3771 -2.4024 -0.8697 15 6 7.5410 -3.0580 -2.2427 16 6 6.9218 -2.1599 -3.3159 17 6 5.4204 -1.9965 -3.0348 18 1 4.9196 -2.9591 -3.1382 19 6 4.8180 -0.9934 -4.0207 20 1 5.2317 -0.0031 -3.8296 21 6 5.1544 -1.4193 -5.4511 22 7 3.3633 -0.9559 -3.8516 23 6 2.6353 0.0616 -4.4084 24 1 3.1337 0.8367 -4.9717 25 6 1.2569 0.0969 -4.2487 26 7 0.6495 -0.8480 -3.5625 27 14 0.2639 1.4853 -5.0075 28 1 0.4545 1.4825 -6.4803 29 1 -1.1750 1.2931 -4.6948 30 1 0.7228 2.7834 -4.4514 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 0.2183 2.3518 -0.0003 35 1 1.4233 4.5251 -0.0019 36 1 3.8849 4.5382 -0.0005 37 1 3.7073 -0.7571 0.5171 38 1 5.1979 0.2157 0.5168 39 1 5.7634 -1.6839 0.3689 40 1 5.4219 -3.2206 -0.4670 41 1 7.8572 -1.4239 -0.8740 42 1 7.8390 -3.0315 -0.1086 43 1 8.6012 -3.1981 -2.4539 44 1 7.0395 -4.0258 -2.2454 45 1 7.4062 -1.1836 -3.2973 46 1 7.0595 -2.6162 -4.2962 47 1 4.6434 -0.7629 -6.1554 48 1 6.2311 -1.3513 -5.6068 49 1 4.8285 -2.4472 -5.6103 50 1 2.9158 -1.6518 -3.3453 51 1 -0.3138 -0.8235 -3.4513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266002800.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:28 Heat of formation + Delta-G solvation = -1.352392 kcal Electronic energy + Delta-G solvation = -33815.097078 eV Core-core repulsion = 29716.191654 eV Total energy + Delta-G solvation = -4098.905424 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.80609 -41.06264 -38.96783 -38.01628 -36.89932 -34.31169 -33.76972 -33.47752 -32.25622 -31.40008 -29.52075 -29.07860 -28.26685 -26.20512 -25.65243 -24.15332 -23.77149 -23.43073 -21.66215 -21.33600 -20.08179 -18.96797 -18.68934 -18.06357 -17.58586 -17.21371 -16.68835 -16.60023 -16.47351 -15.89750 -15.51691 -15.40535 -15.24312 -14.90763 -14.79584 -14.71682 -14.60217 -14.22192 -14.05013 -13.93042 -13.68404 -13.50433 -13.39684 -13.10248 -12.96390 -12.84078 -12.70502 -12.51355 -12.41786 -12.27663 -12.23339 -12.13162 -11.86757 -11.65234 -11.55478 -11.31596 -11.12387 -10.70167 -10.64155 -10.52991 -9.65876 -9.26602 -9.16652 -8.38694 -7.67020 -4.82718 0.18729 0.38577 1.37830 1.39694 1.45145 2.20778 2.30494 2.39312 2.66463 2.90971 3.41207 3.63380 3.71991 3.79745 3.85962 3.92048 4.04353 4.11160 4.20621 4.21810 4.27883 4.36345 4.38359 4.39017 4.43980 4.47535 4.49808 4.58733 4.70988 4.73164 4.78370 4.82411 4.90186 4.94293 4.99556 5.12452 5.12973 5.13128 5.16268 5.21972 5.24884 5.32649 5.46706 5.53250 5.58067 5.63417 5.68228 6.05543 6.34612 6.51878 6.85176 7.06245 7.58560 7.82729 8.35721 8.61363 9.55740 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009135 B = 0.005930 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.464912 B = 4720.223644 C = 6485.098923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.090 3.910 4 C -0.183 4.183 5 C -0.134 4.134 6 C 0.042 3.958 7 N -0.461 5.461 8 C 0.105 3.895 9 C -0.068 4.068 10 C 0.479 3.521 11 O -0.485 6.485 12 N -0.618 5.618 13 C 0.104 3.896 14 C -0.127 4.127 15 C -0.113 4.113 16 C -0.120 4.120 17 C 0.154 3.846 18 H 0.056 0.944 19 C 0.181 3.819 20 H 0.030 0.970 21 C -0.157 4.157 22 N -0.689 5.689 23 C -0.165 4.165 24 H 0.039 0.961 25 C -0.070 4.070 26 N -0.953 5.953 27 Si 0.932 3.068 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.302 1.302 31 H 0.032 0.968 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.184 0.816 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.082 0.918 47 H 0.026 0.974 48 H 0.069 0.931 49 H 0.046 0.954 50 H 0.364 0.636 51 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.538 -1.814 12.698 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.223 6.223 3 C 0.042 3.958 4 C -0.209 4.209 5 C -0.153 4.153 6 C -0.115 4.115 7 N -0.171 5.171 8 C -0.035 4.035 9 C -0.109 4.109 10 C 0.264 3.736 11 O -0.355 6.355 12 N -0.355 5.355 13 C -0.018 4.018 14 C -0.165 4.165 15 C -0.151 4.151 16 C -0.159 4.159 17 C 0.050 3.950 18 H 0.074 0.926 19 C 0.073 3.927 20 H 0.048 0.952 21 C -0.217 4.217 22 N -0.327 5.327 23 C -0.298 4.298 24 H 0.057 0.943 25 C -0.261 4.261 26 N -0.607 5.607 27 Si 0.766 3.234 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.230 1.230 31 H 0.050 0.950 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.184 0.816 36 H 0.201 0.799 37 H 0.124 0.876 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.045 0.955 48 H 0.088 0.912 49 H 0.065 0.935 50 H 0.196 0.804 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 11.220 -1.440 12.103 16.567 hybrid contribution -2.593 0.901 -0.673 2.826 sum 8.627 -0.539 11.431 14.331 Atomic orbital electron populations 1.23024 0.77198 1.04652 1.00542 1.86060 1.22712 1.25899 1.87626 1.20070 0.93642 0.85900 0.96206 1.21954 1.01506 0.92609 1.04866 1.22276 0.95853 0.98763 0.98412 1.23030 0.92099 0.96686 0.99645 1.67381 1.40699 0.98056 1.10923 1.20161 0.88251 0.94000 1.01096 1.20368 1.00957 0.93702 0.95869 1.20625 0.79301 0.82625 0.91071 1.91130 1.47756 1.52357 1.44261 1.47925 1.53222 1.26981 1.07401 1.21903 0.93637 0.96926 0.89368 1.21894 0.94897 1.01623 0.98123 1.21499 1.01395 0.98284 0.93893 1.22002 0.92859 1.00602 1.00400 1.21413 0.96470 0.95860 0.81257 0.92606 1.20467 0.84552 0.95860 0.91812 0.95191 1.22393 1.00216 1.00304 0.98786 1.42236 1.01276 1.27084 1.62131 1.18918 0.88893 1.00896 1.21134 0.94318 1.24874 0.97102 1.00340 1.03805 1.69766 1.07115 1.35489 1.48375 0.85790 0.78507 0.80845 0.78254 1.21802 1.21879 1.22980 0.94962 0.87586 0.90514 0.83501 0.81577 0.79932 0.87566 0.86305 0.88874 0.91205 0.92241 0.88267 0.90023 0.91373 0.92585 0.89970 0.95492 0.91190 0.93488 0.80431 0.95266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 9.83 113.37 1.11 2.48 16 2 O -0.31 -12.59 9.55 -92.54 -0.88 -13.47 16 3 C 0.09 3.59 6.67 22.60 0.15 3.74 16 4 C -0.18 -6.38 9.14 22.56 0.21 -6.18 16 5 C -0.13 -4.03 10.11 22.34 0.23 -3.80 16 6 C 0.04 1.34 11.18 84.69 0.95 2.28 16 7 N -0.46 -17.19 10.27 -183.50 -1.88 -19.08 16 8 C 0.10 4.08 5.29 42.67 0.23 4.30 16 9 C -0.07 -2.34 4.19 29.10 0.12 -2.22 16 10 C 0.48 19.31 7.34 87.65 0.64 19.96 16 11 O -0.48 -24.71 8.87 -3.04 -0.03 -24.74 16 12 N -0.62 -20.23 2.97 -794.24 -2.36 -22.59 16 13 C 0.10 2.29 6.32 86.36 0.55 2.84 16 14 C -0.13 -2.19 6.08 30.67 0.19 -2.00 16 15 C -0.11 -2.05 5.88 30.62 0.18 -1.87 16 16 C -0.12 -3.00 4.67 30.81 0.14 -2.86 16 17 C 0.15 5.22 2.58 45.12 0.12 5.33 16 18 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 19 C 0.18 7.90 1.78 44.99 0.08 7.98 16 20 H 0.03 1.51 6.47 -2.38 -0.02 1.50 16 21 C -0.16 -6.08 8.68 71.98 0.62 -5.45 16 22 N -0.69 -36.88 3.06 -322.94 -0.99 -37.87 16 23 C -0.16 -9.95 8.10 84.03 0.68 -9.27 16 24 H 0.04 2.43 7.83 -2.91 -0.02 2.41 16 25 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 26 N -0.95 -58.69 13.06 21.65 0.28 -58.41 16 27 Si 0.93 50.14 29.55 68.60 2.03 52.17 16 28 H -0.29 -15.36 7.11 99.48 0.71 -14.66 16 29 H -0.29 -15.39 7.11 99.48 0.71 -14.69 16 30 H -0.30 -16.43 7.11 99.48 0.71 -15.72 16 31 H 0.03 1.24 7.70 -2.39 -0.02 1.22 16 32 H 0.11 3.31 8.14 -2.38 -0.02 3.29 16 33 H 0.08 1.95 7.70 -2.39 -0.02 1.93 16 34 H 0.15 4.51 6.45 -2.90 -0.02 4.49 16 35 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 36 H 0.18 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.11 3.38 7.50 -2.39 -0.02 3.36 16 38 H 0.12 3.32 7.45 -2.38 -0.02 3.31 16 39 H 0.09 1.78 5.96 -2.39 -0.01 1.77 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 1.89 6.83 -2.39 -0.02 1.87 16 47 H 0.03 1.16 7.88 -2.38 -0.02 1.14 16 48 H 0.07 2.19 6.82 -2.39 -0.02 2.17 16 49 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.36 21.04 7.70 -92.71 -0.71 20.33 16 51 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -79.12 395.97 3.05 -76.07 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: 0.22 Total: 36.44 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.66 Total: 11.48 kcal Atomic # 7 Polarization: -133.00 SS G_CDS: -4.94 Total: -137.94 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.91 Total: -38.21 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.03 Total: 52.17 kcal Total: -79.12 3.05 -76.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266002800.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.718 kcal (2) G-P(sol) polarization free energy of solvation -79.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds