Wall clock time and date at job start Wed Apr 1 2020 04:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47282 * 2 1 4 4 N 1.46503 * 109.47218 * 120.00114 * 2 1 3 5 5 C 1.36942 * 119.99932 * 285.87492 * 4 2 1 6 6 H 1.07998 * 119.99541 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99893 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99887 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48511 * 109.46933 * 90.00512 * 9 7 5 11 11 H 1.48500 * 109.47347 * 210.00213 * 9 7 5 12 12 H 1.48499 * 109.47467 * 330.00531 * 9 7 5 13 13 C 1.53000 * 109.47164 * 239.99645 * 2 1 3 14 14 H 1.08994 * 109.70623 * 292.95422 * 13 2 1 15 15 C 1.53196 * 109.58456 * 53.30488 * 13 2 1 16 16 C 1.53036 * 109.31578 * 174.42245 * 15 13 2 17 17 C 1.53047 * 109.53467 * 298.63407 * 16 15 13 18 18 C 1.52756 * 109.38438 * 61.23888 * 17 16 15 19 19 N 1.46927 * 109.58599 * 172.58985 * 13 2 1 20 20 C 1.34774 * 120.63186 * 6.58481 * 19 13 2 21 21 O 1.21281 * 120.00049 * 354.32441 * 20 19 13 22 22 C 1.50703 * 119.99925 * 174.31583 * 20 19 13 23 23 O 1.42905 * 109.46840 * 180.02562 * 22 20 19 24 24 C 1.42900 * 113.99500 * 179.97438 * 23 22 20 25 25 C 1.50701 * 109.46870 * 179.97438 * 24 23 22 26 26 C 1.38672 * 120.42389 * 270.25833 * 25 24 23 27 27 C 1.38629 * 118.42001 * 180.24327 * 26 25 24 28 28 C 1.38232 * 119.16139 * 359.74429 * 27 26 25 29 29 N 1.31859 * 120.76387 * 0.02562 * 28 27 26 30 30 C 1.31881 * 121.72207 * 359.97438 * 29 28 27 31 31 H 1.08994 * 109.47253 * 59.99911 * 1 2 3 32 32 H 1.09010 * 109.46653 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46945 * 299.99674 * 1 2 3 34 34 H 0.97001 * 120.00351 * 105.87612 * 4 2 1 35 35 H 0.97003 * 119.99750 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.49905 * 294.37464 * 15 13 2 37 37 H 1.09006 * 109.49829 * 54.46404 * 15 13 2 38 38 H 1.08995 * 109.45948 * 58.64884 * 16 15 13 39 39 H 1.08994 * 109.46375 * 178.61377 * 16 15 13 40 40 H 1.09002 * 109.49579 * 181.31216 * 17 16 15 41 41 H 1.08997 * 109.49767 * 301.38024 * 17 16 15 42 42 H 1.08999 * 109.51314 * 185.70202 * 18 17 16 43 43 H 1.09005 * 109.43376 * 65.42030 * 18 17 16 44 44 H 1.08997 * 109.46553 * 60.00527 * 22 20 19 45 45 H 1.08999 * 109.47094 * 300.00372 * 22 20 19 46 46 H 1.09001 * 109.47235 * 60.00841 * 24 23 22 47 47 H 1.08992 * 109.47432 * 300.00056 * 24 23 22 48 48 H 1.07994 * 120.78566 * 359.97059 * 26 25 24 49 49 H 1.07995 * 120.42131 * 179.72752 * 27 26 25 50 50 H 1.07998 * 119.61747 * 180.02562 * 28 27 26 51 51 H 1.08007 * 119.61366 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.9408 -0.0796 2.4193 6 1 1.5199 0.9116 2.5019 7 6 2.4030 -0.7342 3.5527 8 7 2.9163 -1.9419 3.4518 9 14 2.2978 0.0996 5.2209 10 1 0.9998 -0.2347 5.8604 11 1 3.4106 -0.3745 6.0824 12 1 2.3992 1.5708 5.0463 13 6 2.0400 -0.7213 -1.2492 14 1 1.7853 -1.7795 -1.1923 15 6 1.3981 -0.1050 -2.4961 16 6 2.0149 -0.7349 -3.7470 17 6 3.5164 -0.4404 -3.7810 18 6 4.1817 -1.0555 -2.5512 19 7 3.4984 -0.5701 -1.3443 20 6 4.1954 0.0079 -0.3461 21 8 3.6109 0.5012 0.5951 22 6 5.7011 0.0411 -0.3994 23 8 6.2045 0.7011 0.7639 24 6 7.6301 0.7864 0.8125 25 6 8.0480 1.4975 2.0738 26 6 8.1946 2.8764 2.0868 27 6 8.5857 3.4871 3.2683 28 6 8.8097 2.7075 4.3875 29 7 8.6559 1.3988 4.3397 30 6 8.2851 0.7842 3.2333 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.3967 -1.5807 1.1219 35 1 3.2397 -2.3992 4.2438 36 1 0.3248 -0.2951 -2.4846 37 1 1.5774 0.9702 -2.5040 38 1 1.8568 -1.8131 -3.7262 39 1 1.5425 -0.3159 -4.6353 40 1 3.9509 -0.8694 -4.6839 41 1 3.6758 0.6379 -3.7774 42 1 5.2310 -0.7621 -2.5199 43 1 4.1051 -2.1416 -2.6025 44 1 6.0212 0.5805 -1.2908 45 1 6.0860 -0.9781 -0.4336 46 1 7.9907 1.3415 -0.0535 47 1 8.0547 -0.2174 0.8033 48 1 8.0128 3.4600 1.1966 49 1 8.7140 4.5585 3.3136 50 1 9.1142 3.1757 5.3119 51 1 8.1699 -0.2898 3.2323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266011075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:52 Heat of formation + Delta-G solvation = 16.999571 kcal Electronic energy + Delta-G solvation = -32197.795019 eV Core-core repulsion = 28099.685396 eV Total energy + Delta-G solvation = -4098.109623 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.19953 -40.02120 -37.77496 -36.49618 -35.13306 -32.87088 -32.54969 -32.15123 -31.69429 -29.84723 -28.19582 -27.68773 -26.01456 -24.41521 -24.17953 -23.53867 -22.58593 -21.97669 -20.71137 -19.94746 -18.82869 -17.20383 -16.79552 -16.60090 -16.57357 -16.22241 -15.57922 -15.27519 -15.19526 -14.72347 -14.39075 -14.24881 -13.91114 -13.69698 -13.61726 -13.42192 -13.10234 -13.08436 -13.02978 -12.75866 -12.51273 -12.11768 -11.97308 -11.89521 -11.72985 -11.33507 -11.28374 -11.09637 -10.85650 -10.83306 -10.59870 -10.55243 -10.33617 -10.06773 -9.81002 -9.62984 -9.59047 -9.36091 -9.34296 -9.04021 -8.59196 -8.11988 -7.92390 -6.38301 -5.41285 -2.61385 1.06814 1.31333 3.17542 3.50263 3.64579 3.70485 3.72170 3.78132 4.24066 4.51745 4.75415 4.76863 4.80489 4.85498 4.92052 4.95858 4.96382 5.02363 5.19033 5.21984 5.24135 5.32144 5.37835 5.43892 5.50255 5.54313 5.63647 5.65032 5.79753 5.80641 5.84494 5.90067 5.95178 6.01753 6.08839 6.10674 6.13496 6.19680 6.25989 6.39676 6.49384 6.52678 6.71140 6.84351 6.96635 7.10700 7.25547 7.44720 8.01946 8.03273 8.05628 8.75792 9.13311 9.88138 10.43137 10.78274 11.83262 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008539 B = 0.004323 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.470138 B = 6475.015287 C = 9007.627435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.181 3.819 3 H 0.060 0.940 4 N -0.691 5.691 5 C -0.182 4.182 6 H 0.061 0.939 7 C -0.022 4.022 8 N -0.943 5.943 9 Si 0.896 3.104 10 H -0.297 1.297 11 H -0.295 1.295 12 H -0.287 1.287 13 C 0.151 3.849 14 H 0.064 0.936 15 C -0.129 4.129 16 C -0.118 4.118 17 C -0.134 4.134 18 C 0.112 3.888 19 N -0.618 5.618 20 C 0.468 3.532 21 O -0.405 6.405 22 C 0.052 3.948 23 O -0.345 6.345 24 C 0.107 3.893 25 C -0.137 4.137 26 C -0.054 4.054 27 C -0.180 4.180 28 C 0.100 3.900 29 N -0.487 5.487 30 C 0.128 3.872 31 H 0.036 0.964 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.377 0.623 35 H 0.247 0.753 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.154 0.846 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.964 5.544 -16.278 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.071 3.929 3 H 0.078 0.922 4 N -0.331 5.331 5 C -0.314 4.314 6 H 0.079 0.921 7 C -0.216 4.216 8 N -0.595 5.595 9 Si 0.729 3.271 10 H -0.225 1.225 11 H -0.222 1.222 12 H -0.213 1.213 13 C 0.048 3.952 14 H 0.082 0.918 15 C -0.168 4.168 16 C -0.156 4.156 17 C -0.172 4.172 18 C -0.012 4.012 19 N -0.359 5.359 20 C 0.251 3.749 21 O -0.269 6.269 22 C -0.028 4.028 23 O -0.263 6.263 24 C 0.029 3.971 25 C -0.139 4.139 26 C -0.080 4.080 27 C -0.200 4.200 28 C -0.057 4.057 29 N -0.195 5.195 30 C -0.029 4.029 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.210 0.790 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.151 0.849 49 H 0.152 0.848 50 H 0.172 0.828 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.681 5.574 -14.608 18.390 hybrid contribution 0.191 0.414 -0.120 0.471 sum 9.872 5.987 -14.728 18.715 Atomic orbital electron populations 1.22576 0.99839 1.00612 0.99942 1.20442 0.90413 0.96939 0.85109 0.92207 1.42313 1.71716 1.17229 1.01884 1.18961 1.30215 0.98035 0.84165 0.92052 1.24496 1.02978 0.96957 0.97132 1.69628 1.49125 1.13220 1.27528 0.86314 0.76592 0.78607 0.85575 1.22529 1.22221 1.21303 1.21464 0.78623 0.99484 0.95674 0.91780 1.22020 1.00103 1.00586 0.94054 1.21506 0.95176 1.00927 0.97969 1.21843 0.96409 1.01408 0.97590 1.21476 0.96151 0.98614 0.84930 1.47749 1.07000 1.63089 1.18040 1.19939 0.88086 0.83618 0.83264 1.91205 1.67696 1.37963 1.30051 1.22246 0.94696 0.97318 0.88554 1.88213 1.18408 1.78287 1.41407 1.21189 0.82920 0.98917 0.94056 1.20574 1.01829 0.94664 0.96804 1.21476 0.94184 0.93824 0.98490 1.22105 1.02373 1.01377 0.94106 1.22811 0.95130 0.89629 0.98085 1.67743 1.12472 1.11290 1.28002 1.22759 0.92332 1.00793 0.87035 0.94470 0.93747 0.92682 0.79014 0.94336 0.90659 0.91677 0.91938 0.92157 0.91323 0.91726 0.90717 0.92007 0.91936 0.91475 0.92584 0.92113 0.84860 0.84783 0.82849 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 8.82 37.16 0.33 -2.88 16 2 C 0.18 3.79 1.78 -67.93 -0.12 3.67 16 3 H 0.06 1.40 6.47 -51.93 -0.34 1.07 16 4 N -0.69 -18.14 3.05 -53.42 -0.16 -18.31 16 5 C -0.18 -5.42 8.18 -15.06 -0.12 -5.55 16 6 H 0.06 1.86 7.83 -52.49 -0.41 1.44 16 7 C -0.02 -0.69 5.50 -17.43 -0.10 -0.78 16 8 N -0.94 -30.38 13.06 55.49 0.72 -29.66 16 9 Si 0.90 24.97 29.55 -169.99 -5.02 19.95 16 10 H -0.30 -8.13 7.11 56.52 0.40 -7.72 16 11 H -0.30 -8.38 7.11 56.52 0.40 -7.97 16 12 H -0.29 -7.96 7.11 56.52 0.40 -7.56 16 13 C 0.15 2.50 2.57 -67.60 -0.17 2.33 16 14 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.13 -1.64 4.62 -26.61 -0.12 -1.77 16 16 C -0.12 -1.18 5.89 -26.69 -0.16 -1.34 16 17 C -0.13 -1.24 6.06 -26.83 -0.16 -1.40 16 18 C 0.11 1.23 6.30 -3.93 -0.02 1.21 16 19 N -0.62 -9.75 2.98 -165.48 -0.49 -10.25 16 20 C 0.47 8.99 7.43 -10.99 -0.08 8.91 16 21 O -0.41 -10.04 9.33 -14.35 -0.13 -10.17 16 22 C 0.05 0.80 4.84 36.01 0.17 0.97 16 23 O -0.35 -6.29 9.86 -55.14 -0.54 -6.83 16 24 C 0.11 1.41 6.09 36.01 0.22 1.63 16 25 C -0.14 -1.97 5.53 -104.48 -0.58 -2.55 16 26 C -0.05 -0.68 9.86 -39.28 -0.39 -1.07 16 27 C -0.18 -2.12 10.11 -39.44 -0.40 -2.52 16 28 C 0.10 1.33 11.18 -17.54 -0.20 1.13 16 29 N -0.49 -7.89 10.36 -13.25 -0.14 -8.03 16 30 C 0.13 2.02 10.86 -17.55 -0.19 1.83 16 31 H 0.04 0.57 6.47 -51.93 -0.34 0.24 16 32 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.05 1.15 8.01 -51.93 -0.42 0.73 16 34 H 0.38 10.64 7.69 -40.82 -0.31 10.33 16 35 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 36 H 0.07 0.91 6.70 -51.93 -0.35 0.56 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.68 5.97 -51.93 -0.31 0.37 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.73 7.44 -51.93 -0.39 0.34 16 45 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 46 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 47 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 48 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 49 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 50 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 51 H 0.16 2.34 8.06 -52.48 -0.42 1.91 16 LS Contribution 401.69 15.07 6.05 6.05 Total: -1.00 -37.98 401.69 -10.14 -48.12 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.33 Total: 7.29 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.09 Total: 1.83 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -0.07 Total: -66.24 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.68 Total: -17.00 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.02 Total: 19.95 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.98 -10.14 -48.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266011075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.118 kcal (2) G-P(sol) polarization free energy of solvation -37.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds