Wall clock time and date at job start Wed Apr 1 2020 04:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47282 * 2 1 4 4 N 1.46503 * 109.47218 * 120.00114 * 2 1 3 5 5 C 1.36942 * 119.99932 * 285.87492 * 4 2 1 6 6 H 1.07998 * 119.99541 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99893 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99887 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48511 * 109.46933 * 90.00512 * 9 7 5 11 11 H 1.48500 * 109.47347 * 210.00213 * 9 7 5 12 12 H 1.48499 * 109.47467 * 330.00531 * 9 7 5 13 13 C 1.53000 * 109.47164 * 239.99645 * 2 1 3 14 14 H 1.08994 * 109.70623 * 292.95422 * 13 2 1 15 15 C 1.53196 * 109.58456 * 53.30488 * 13 2 1 16 16 C 1.53036 * 109.31578 * 174.42245 * 15 13 2 17 17 C 1.53047 * 109.53467 * 298.63407 * 16 15 13 18 18 C 1.52756 * 109.38438 * 61.23888 * 17 16 15 19 19 N 1.46927 * 109.58599 * 172.58985 * 13 2 1 20 20 C 1.34774 * 120.63186 * 6.58481 * 19 13 2 21 21 O 1.21281 * 120.00049 * 354.32441 * 20 19 13 22 22 C 1.50703 * 119.99925 * 174.31583 * 20 19 13 23 23 O 1.42905 * 109.46840 * 180.02562 * 22 20 19 24 24 C 1.42900 * 113.99500 * 179.97438 * 23 22 20 25 25 C 1.50701 * 109.46870 * 179.97438 * 24 23 22 26 26 C 1.38672 * 120.42389 * 270.25833 * 25 24 23 27 27 C 1.38629 * 118.42001 * 180.24327 * 26 25 24 28 28 C 1.38232 * 119.16139 * 359.74429 * 27 26 25 29 29 N 1.31859 * 120.76387 * 0.02562 * 28 27 26 30 30 C 1.31881 * 121.72207 * 359.97438 * 29 28 27 31 31 H 1.08994 * 109.47253 * 59.99911 * 1 2 3 32 32 H 1.09010 * 109.46653 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46945 * 299.99674 * 1 2 3 34 34 H 0.97001 * 120.00351 * 105.87612 * 4 2 1 35 35 H 0.97003 * 119.99750 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.49905 * 294.37464 * 15 13 2 37 37 H 1.09006 * 109.49829 * 54.46404 * 15 13 2 38 38 H 1.08995 * 109.45948 * 58.64884 * 16 15 13 39 39 H 1.08994 * 109.46375 * 178.61377 * 16 15 13 40 40 H 1.09002 * 109.49579 * 181.31216 * 17 16 15 41 41 H 1.08997 * 109.49767 * 301.38024 * 17 16 15 42 42 H 1.08999 * 109.51314 * 185.70202 * 18 17 16 43 43 H 1.09005 * 109.43376 * 65.42030 * 18 17 16 44 44 H 1.08997 * 109.46553 * 60.00527 * 22 20 19 45 45 H 1.08999 * 109.47094 * 300.00372 * 22 20 19 46 46 H 1.09001 * 109.47235 * 60.00841 * 24 23 22 47 47 H 1.08992 * 109.47432 * 300.00056 * 24 23 22 48 48 H 1.07994 * 120.78566 * 359.97059 * 26 25 24 49 49 H 1.07995 * 120.42131 * 179.72752 * 27 26 25 50 50 H 1.07998 * 119.61747 * 180.02562 * 28 27 26 51 51 H 1.08007 * 119.61366 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.9408 -0.0796 2.4193 6 1 1.5199 0.9116 2.5019 7 6 2.4030 -0.7342 3.5527 8 7 2.9163 -1.9419 3.4518 9 14 2.2978 0.0996 5.2209 10 1 0.9998 -0.2347 5.8604 11 1 3.4106 -0.3745 6.0824 12 1 2.3992 1.5708 5.0463 13 6 2.0400 -0.7213 -1.2492 14 1 1.7853 -1.7795 -1.1923 15 6 1.3981 -0.1050 -2.4961 16 6 2.0149 -0.7349 -3.7470 17 6 3.5164 -0.4404 -3.7810 18 6 4.1817 -1.0555 -2.5512 19 7 3.4984 -0.5701 -1.3443 20 6 4.1954 0.0079 -0.3461 21 8 3.6109 0.5012 0.5951 22 6 5.7011 0.0411 -0.3994 23 8 6.2045 0.7011 0.7639 24 6 7.6301 0.7864 0.8125 25 6 8.0480 1.4975 2.0738 26 6 8.1946 2.8764 2.0868 27 6 8.5857 3.4871 3.2683 28 6 8.8097 2.7075 4.3875 29 7 8.6559 1.3988 4.3397 30 6 8.2851 0.7842 3.2333 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.3967 -1.5807 1.1219 35 1 3.2397 -2.3992 4.2438 36 1 0.3248 -0.2951 -2.4846 37 1 1.5774 0.9702 -2.5040 38 1 1.8568 -1.8131 -3.7262 39 1 1.5425 -0.3159 -4.6353 40 1 3.9509 -0.8694 -4.6839 41 1 3.6758 0.6379 -3.7774 42 1 5.2310 -0.7621 -2.5199 43 1 4.1051 -2.1416 -2.6025 44 1 6.0212 0.5805 -1.2908 45 1 6.0860 -0.9781 -0.4336 46 1 7.9907 1.3415 -0.0535 47 1 8.0547 -0.2174 0.8033 48 1 8.0128 3.4600 1.1966 49 1 8.7140 4.5585 3.3136 50 1 9.1142 3.1757 5.3119 51 1 8.1699 -0.2898 3.2323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266011075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:51 Heat of formation + Delta-G solvation = -8.735567 kcal Electronic energy + Delta-G solvation = -32198.910978 eV Core-core repulsion = 28099.685396 eV Total energy + Delta-G solvation = -4099.225583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.46108 -41.12676 -38.96772 -37.77528 -36.83536 -34.25238 -33.89149 -33.59851 -32.70942 -31.49845 -29.60519 -29.11426 -27.10644 -26.08839 -25.49736 -24.58059 -24.07205 -23.00205 -21.87345 -21.38471 -20.20437 -18.83276 -18.20945 -17.82392 -17.68038 -17.42454 -16.83334 -16.64925 -16.46934 -16.26634 -15.64926 -15.45819 -15.31958 -15.00529 -14.82475 -14.75633 -14.52389 -14.26098 -14.14489 -14.00296 -13.77937 -13.56479 -13.48088 -13.11551 -12.99787 -12.94356 -12.79599 -12.53181 -12.42563 -12.30023 -12.16048 -11.88020 -11.67223 -11.60462 -11.33959 -11.14574 -10.84931 -10.80736 -10.68070 -10.42617 -10.09197 -9.65299 -9.35027 -8.48332 -7.78002 -4.93344 0.02862 0.29076 1.36937 1.41253 1.47010 1.97740 2.12648 2.63361 2.70205 3.18807 3.50185 3.56829 3.68776 3.83852 3.85816 3.90323 3.97061 4.03538 4.04273 4.11348 4.17998 4.19668 4.35601 4.38576 4.40080 4.41685 4.44885 4.47961 4.68530 4.69510 4.76331 4.79006 4.80674 4.90401 4.96809 5.08991 5.10991 5.12409 5.18645 5.23394 5.25326 5.31164 5.44146 5.51157 5.58954 5.64269 5.71880 5.95071 6.18671 6.44066 6.77692 6.95809 7.50405 7.74860 8.29104 8.51125 9.47196 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008539 B = 0.004323 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.470138 B = 6475.015287 C = 9007.627435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.179 3.821 3 H 0.034 0.966 4 N -0.694 5.694 5 C -0.160 4.160 6 H 0.049 0.951 7 C -0.086 4.086 8 N -0.974 5.974 9 Si 0.947 3.053 10 H -0.287 1.287 11 H -0.305 1.305 12 H -0.287 1.287 13 C 0.153 3.847 14 H 0.057 0.943 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.102 3.898 19 N -0.615 5.615 20 C 0.460 3.540 21 O -0.481 6.481 22 C 0.056 3.944 23 O -0.393 6.393 24 C 0.106 3.894 25 C -0.151 4.151 26 C -0.060 4.060 27 C -0.171 4.171 28 C 0.085 3.915 29 N -0.522 5.522 30 C 0.096 3.904 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.363 0.637 35 H 0.239 0.761 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.161 0.839 49 H 0.172 0.828 50 H 0.181 0.819 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.589 6.787 -19.927 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.051 0.949 4 N -0.333 5.333 5 C -0.293 4.293 6 H 0.067 0.933 7 C -0.276 4.276 8 N -0.629 5.629 9 Si 0.780 3.220 10 H -0.215 1.215 11 H -0.232 1.232 12 H -0.214 1.214 13 C 0.050 3.950 14 H 0.075 0.925 15 C -0.159 4.159 16 C -0.153 4.153 17 C -0.166 4.166 18 C -0.019 4.019 19 N -0.354 5.354 20 C 0.245 3.755 21 O -0.350 6.350 22 C -0.023 4.023 23 O -0.313 6.313 24 C 0.029 3.971 25 C -0.153 4.153 26 C -0.086 4.086 27 C -0.191 4.191 28 C -0.072 4.072 29 N -0.231 5.231 30 C -0.061 4.061 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.194 0.806 35 H 0.047 0.953 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.101 0.899 46 H 0.111 0.889 47 H 0.090 0.910 48 H 0.179 0.821 49 H 0.190 0.810 50 H 0.198 0.802 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.288 6.821 -18.355 22.120 hybrid contribution 0.032 0.122 0.876 0.885 sum 10.320 6.943 -17.478 21.452 Atomic orbital electron populations 1.22429 0.98187 1.00784 1.00551 1.20528 0.91309 0.95681 0.85373 0.94854 1.42351 1.71792 1.16608 1.02499 1.19086 1.27498 0.97007 0.85758 0.93264 1.25060 1.04717 0.97956 0.99898 1.69756 1.51331 1.14385 1.27447 0.85466 0.76452 0.77547 0.82495 1.21476 1.23236 1.21365 1.21343 0.79791 0.98599 0.95316 0.92535 1.21958 1.00498 1.00079 0.93402 1.21514 0.95725 1.01083 0.96928 1.21829 0.95736 1.01350 0.97654 1.21874 0.97287 0.99278 0.83509 1.47901 1.06782 1.61790 1.18929 1.20824 0.90001 0.81926 0.82738 1.91163 1.69391 1.41744 1.32750 1.22316 0.91754 0.98786 0.89473 1.88148 1.21196 1.78861 1.43081 1.21403 0.80704 1.00150 0.94804 1.20811 1.01879 0.95761 0.96835 1.21907 0.93443 0.93326 0.99952 1.22538 1.00331 1.03125 0.93079 1.23379 0.94936 0.88926 0.99955 1.67681 1.13733 1.13123 1.28598 1.22815 0.94213 1.00905 0.88121 0.90518 0.93697 0.95361 0.80582 0.95251 0.89815 0.92252 0.91456 0.89903 0.88081 0.91919 0.88387 0.91148 0.87460 0.89917 0.88894 0.91045 0.82149 0.81021 0.80225 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.05 8.82 71.98 0.63 -5.41 16 2 C 0.18 7.68 1.78 44.99 0.08 7.76 16 3 H 0.03 1.63 6.47 -2.39 -0.02 1.62 16 4 N -0.69 -37.94 3.05 -322.93 -0.99 -38.92 16 5 C -0.16 -9.96 8.18 84.03 0.69 -9.27 16 6 H 0.05 3.12 7.83 -2.91 -0.02 3.10 16 7 C -0.09 -5.57 5.50 84.86 0.47 -5.11 16 8 N -0.97 -65.42 13.06 21.65 0.28 -65.13 16 9 Si 0.95 53.49 29.55 68.60 2.03 55.52 16 10 H -0.29 -15.53 7.11 99.48 0.71 -14.83 16 11 H -0.30 -17.53 7.11 99.48 0.71 -16.82 16 12 H -0.29 -16.00 7.11 99.48 0.71 -15.30 16 13 C 0.15 4.96 2.57 44.98 0.12 5.07 16 14 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 15 C -0.12 -2.77 4.62 30.67 0.14 -2.62 16 16 C -0.11 -1.82 5.89 30.62 0.18 -1.64 16 17 C -0.13 -1.77 6.06 30.53 0.19 -1.59 16 18 C 0.10 1.89 6.30 86.22 0.54 2.44 16 19 N -0.62 -18.62 2.98 -795.84 -2.37 -20.99 16 20 C 0.46 17.67 7.43 87.66 0.65 18.32 16 21 O -0.48 -24.75 9.33 16.00 0.15 -24.60 16 22 C 0.06 1.63 4.84 71.24 0.34 1.98 16 23 O -0.39 -14.30 9.86 -129.94 -1.28 -15.59 16 24 C 0.11 2.68 6.09 71.24 0.43 3.11 16 25 C -0.15 -4.35 5.53 -19.77 -0.11 -4.46 16 26 C -0.06 -1.44 9.86 22.47 0.22 -1.22 16 27 C -0.17 -3.72 10.11 22.36 0.23 -3.50 16 28 C 0.08 2.20 11.18 84.69 0.95 3.15 16 29 N -0.52 -17.57 10.36 -195.83 -2.03 -19.60 16 30 C 0.10 3.19 10.86 84.67 0.92 4.11 16 31 H 0.08 2.26 6.47 -2.39 -0.02 2.25 16 32 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.03 1.18 8.01 -2.39 -0.02 1.16 16 34 H 0.36 21.41 7.69 -92.71 -0.71 20.70 16 35 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 36 H 0.08 1.77 6.70 -2.38 -0.02 1.76 16 37 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.10 1.37 5.97 -2.39 -0.01 1.35 16 43 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.11 2.10 7.44 -2.39 -0.02 2.08 16 45 H 0.08 2.12 8.13 -2.39 -0.02 2.10 16 46 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 47 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 48 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 49 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 50 H 0.18 3.44 8.06 -2.91 -0.02 3.41 16 51 H 0.15 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -90.14 401.69 2.67 -87.47 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.21 Total: 30.71 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 6.67 Total: 11.13 kcal Atomic # 7 Polarization: -139.54 SS G_CDS: -5.10 Total: -144.64 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.13 Total: -40.18 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 2.03 Total: 55.52 kcal Total: -90.14 2.67 -87.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266011075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.736 kcal (2) G-P(sol) polarization free energy of solvation -90.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds